Wall clock time and date at job start Tue Mar 31 2020 04:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 O 1.20928 * 124.56811 * 2 1 4 4 C 1.34169 * 112.19051 * 180.22450 * 3 2 1 5 5 C 1.48201 * 126.38443 * 179.78156 * 4 3 2 6 6 O 1.21497 * 120.00212 * 186.07990 * 5 4 3 7 7 N 1.34781 * 120.00196 * 6.08042 * 5 4 3 8 8 C 1.48215 * 119.97356 * 175.55580 * 7 5 4 9 9 C 1.47609 * 110.03437 * 102.55009 * 8 7 5 10 10 C 1.53798 * 111.84069 * 58.44200 * 9 8 7 11 11 N 1.43464 * 107.95779 * 281.53571 * 10 9 8 12 12 C 1.36940 * 118.94279 * 273.63350 * 11 10 9 13 13 H 1.07997 * 119.99781 * 140.24062 * 12 11 10 14 14 C 1.38803 * 119.99873 * 320.24574 * 12 11 10 15 15 N 1.31625 * 120.00196 * 159.85606 * 14 12 11 16 16 Si 1.86801 * 120.00015 * 339.85458 * 14 12 11 17 17 H 1.48492 * 109.47226 * 95.28907 * 16 14 12 18 18 H 1.48508 * 109.47245 * 215.28874 * 16 14 12 19 19 H 1.48498 * 109.47156 * 335.28623 * 16 14 12 20 20 C 1.48862 * 122.11893 * 93.60812 * 11 10 9 21 21 C 1.43627 * 119.96695 * 355.83721 * 7 5 4 22 22 C 1.36317 * 107.23114 * 359.52204 * 4 3 2 23 23 C 1.34827 * 124.56825 * 179.70409 * 2 1 3 24 24 O 1.21981 * 127.14997 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47357 * 270.29627 * 1 2 3 26 26 H 1.09003 * 109.47309 * 30.29876 * 1 2 3 27 27 H 1.09001 * 109.47134 * 150.29805 * 1 2 3 28 28 H 1.08994 * 109.32784 * 222.78363 * 8 7 5 29 29 H 1.09002 * 109.32266 * 342.25476 * 8 7 5 30 30 H 1.08990 * 109.10779 * 297.76329 * 9 8 7 31 31 H 1.09000 * 108.84169 * 178.93146 * 9 8 7 32 32 H 1.08996 * 109.76495 * 161.92503 * 10 9 8 33 33 H 1.09000 * 109.81324 * 41.17504 * 10 9 8 34 34 H 0.97007 * 119.99947 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.48166 * 200.66042 * 20 11 10 36 36 H 1.09001 * 109.48590 * 80.63781 * 20 11 10 37 37 H 1.09001 * 108.87295 * 31.41929 * 21 7 5 38 38 H 1.08997 * 108.87376 * 149.85767 * 21 7 5 39 39 H 1.08005 * 127.99610 * 180.23727 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 8 2.1510 0.9958 0.0000 4 6 3.4615 0.7082 -0.0049 5 6 4.5760 1.6851 -0.0108 6 8 5.7220 1.2987 -0.1263 7 7 4.3182 3.0023 0.1119 8 6 5.4367 3.9703 0.2049 9 6 5.6237 4.6531 -1.0903 10 6 4.3509 5.3922 -1.5364 11 7 3.4428 4.4223 -2.0776 12 6 3.5484 4.0810 -3.3996 13 1 3.4212 3.0525 -3.7035 14 6 3.8189 5.0569 -4.3489 15 7 4.3069 4.7158 -5.5228 16 14 3.4904 6.8543 -3.9604 17 1 4.7401 7.4920 -3.4740 18 1 3.0255 7.5490 -5.1878 19 1 2.4444 6.9507 -2.9108 20 6 2.3899 3.7745 -1.2483 21 6 2.9597 3.4662 0.1584 22 6 3.5769 -0.6501 0.0026 23 6 2.2299 -1.1102 0.0057 24 8 1.8473 -2.2684 0.0122 25 1 -0.3634 0.0053 1.0276 26 1 -0.3634 0.8873 -0.5185 27 1 -0.3633 -0.8927 -0.5092 28 1 5.2122 4.7081 0.9751 29 1 6.3510 3.4403 0.4723 30 1 5.8897 3.9155 -1.8473 31 1 6.4368 5.3726 -0.9948 32 1 4.6009 6.1291 -2.2996 33 1 3.8929 5.8887 -0.6809 34 1 4.4956 5.3978 -6.1863 35 1 2.0727 2.8463 -1.7235 36 1 1.5361 4.4456 -1.1556 37 1 2.3419 2.7014 0.6291 38 1 2.9170 4.3724 0.7626 39 1 4.4813 -1.2405 0.0051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981056408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:29 Heat of formation + Delta-G solvation = 38.716181 kcal Electronic energy + Delta-G solvation = -25378.964385 eV Core-core repulsion = 21713.490888 eV Total energy + Delta-G solvation = -3665.473496 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.21988 -41.38687 -39.35939 -38.93847 -36.28893 -35.43465 -33.95553 -33.56953 -33.38598 -29.72104 -29.05896 -27.34659 -25.62098 -25.17656 -24.47737 -22.86693 -21.86012 -20.79497 -19.51433 -19.02602 -18.66650 -18.38362 -17.73308 -17.21308 -16.62720 -16.39992 -16.26100 -15.80908 -15.26890 -15.15461 -14.99408 -14.87886 -14.79207 -14.54989 -14.17330 -13.87028 -13.78212 -13.59601 -13.40890 -12.83211 -12.66305 -12.41119 -12.06456 -11.88391 -11.69268 -11.59532 -11.43478 -11.24497 -11.08229 -10.61319 -9.83631 -9.64768 -8.67728 -8.17402 -5.59742 -0.60010 0.53787 1.33409 1.37717 1.44002 1.55429 1.58174 1.88269 2.18768 2.43463 3.09268 3.21789 3.41243 3.59136 3.87896 4.02305 4.09059 4.15563 4.27895 4.33163 4.37917 4.49027 4.56384 4.61842 4.66244 4.69394 4.77440 4.88996 4.97147 5.03537 5.06959 5.14336 5.40945 5.58221 5.98344 6.09031 6.18162 6.42563 6.70975 6.86710 7.07150 7.68704 8.02023 9.02748 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.005541 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.084879 B = 5052.312366 C = 5564.607418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.446 5.446 3 O 0.020 5.980 4 C 0.043 3.957 5 C 0.596 3.404 6 O -0.539 6.539 7 N -0.568 5.568 8 C 0.130 3.870 9 C -0.159 4.159 10 C 0.142 3.858 11 N -0.614 5.614 12 C -0.255 4.255 13 H 0.020 0.980 14 C -0.027 4.027 15 N -0.958 5.958 16 Si 0.961 3.039 17 H -0.273 1.273 18 H -0.317 1.317 19 H -0.247 1.247 20 C 0.124 3.876 21 C 0.086 3.914 22 C -0.255 4.255 23 C 0.472 3.528 24 O -0.566 6.566 25 H 0.108 0.892 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.025 0.975 31 H 0.086 0.914 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.261 0.739 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.975 0.730 18.430 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.207 5.207 3 O 0.010 5.990 4 C -0.017 4.017 5 C 0.380 3.620 6 O -0.417 6.417 7 N -0.297 5.297 8 C 0.010 3.990 9 C -0.200 4.200 10 C 0.016 3.984 11 N -0.339 5.339 12 C -0.385 4.385 13 H 0.038 0.962 14 C -0.223 4.223 15 N -0.602 5.602 16 Si 0.789 3.211 17 H -0.200 1.200 18 H -0.246 1.246 19 H -0.170 1.170 20 C 0.000 4.000 21 C -0.039 4.039 22 C -0.280 4.280 23 C 0.271 3.729 24 O -0.451 6.451 25 H 0.126 0.874 26 H 0.137 0.863 27 H 0.122 0.878 28 H 0.139 0.861 29 H 0.102 0.898 30 H 0.044 0.956 31 H 0.104 0.896 32 H 0.044 0.956 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.138 0.862 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.911 0.231 18.282 19.546 hybrid contribution 0.285 0.299 -1.168 1.239 sum -6.626 0.529 17.114 18.359 Atomic orbital electron populations 1.22606 0.68011 1.07004 1.06478 1.46474 1.07285 0.99440 1.67549 1.84340 1.14698 1.20104 1.79885 1.23243 0.82167 0.95874 1.00372 1.17033 0.85196 0.82142 0.77607 1.90824 1.20293 1.79126 1.51460 1.47564 1.09391 1.04589 1.68166 1.21027 0.89040 0.91053 0.97854 1.21703 1.00445 1.00278 0.97553 1.20856 0.89725 0.90906 0.96899 1.43991 1.34754 1.48791 1.06338 1.18514 1.44857 0.91534 0.83628 0.96197 1.26225 0.98312 1.03026 0.94718 1.70033 1.46347 1.35204 1.08633 0.85605 0.78980 0.80165 0.76336 1.20041 1.24627 1.17047 1.22337 0.90658 0.96645 0.90394 1.22284 0.80931 1.02798 0.97863 1.23396 0.99982 0.93675 1.10916 1.18351 0.87086 0.85605 0.81835 1.90916 1.79715 1.17232 1.57250 0.87358 0.86329 0.87823 0.86071 0.89814 0.95567 0.89605 0.95617 0.89691 0.93026 0.94138 0.91985 0.87807 0.86248 0.78890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.27 11.22 127.77 1.43 2.70 16 2 N -0.45 -10.57 3.68 -492.75 -1.82 -12.38 16 3 O 0.02 0.49 6.83 70.41 0.48 0.97 16 4 C 0.04 1.23 6.86 24.47 0.17 1.40 16 5 C 0.60 19.17 7.69 86.89 0.67 19.84 16 6 O -0.54 -20.69 16.37 -3.71 -0.06 -20.76 16 7 N -0.57 -15.53 2.45 -833.44 -2.04 -17.57 16 8 C 0.13 3.25 5.71 84.36 0.48 3.73 16 9 C -0.16 -5.22 5.65 29.18 0.16 -5.06 16 10 C 0.14 5.05 4.53 87.21 0.40 5.45 16 11 N -0.61 -25.47 2.10 -698.08 -1.47 -26.94 16 12 C -0.25 -13.94 9.56 84.03 0.80 -13.14 16 13 H 0.02 1.28 8.06 -2.91 -0.02 1.26 16 14 C -0.03 -1.54 5.32 84.86 0.45 -1.09 16 15 N -0.96 -59.99 13.97 21.65 0.30 -59.69 16 16 Si 0.96 43.99 24.98 68.60 1.71 45.70 16 17 H -0.27 -11.83 6.73 99.48 0.67 -11.16 16 18 H -0.32 -15.12 7.11 99.48 0.71 -14.42 16 19 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 20 C 0.12 3.86 6.74 86.56 0.58 4.44 16 21 C 0.09 1.87 4.84 87.55 0.42 2.30 16 22 C -0.25 -7.65 10.94 22.84 0.25 -7.40 16 23 C 0.47 14.50 8.02 85.25 0.68 15.19 16 24 O -0.57 -20.75 17.84 -5.25 -0.09 -20.84 16 25 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.10 1.47 8.03 -2.39 -0.02 1.45 16 28 H 0.12 1.91 8.05 -2.39 -0.02 1.89 16 29 H 0.08 2.18 7.18 -2.39 -0.02 2.17 16 30 H 0.03 1.14 7.91 -2.39 -0.02 1.12 16 31 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.03 1.07 3.09 -2.39 -0.01 1.06 16 33 H 0.08 2.27 7.59 -2.39 -0.02 2.25 16 34 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 35 H 0.04 1.40 7.31 -2.39 -0.02 1.38 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.10 1.88 4.91 -2.39 -0.01 1.86 16 38 H 0.12 1.78 7.73 -2.39 -0.02 1.76 16 39 H 0.19 5.48 8.06 -2.91 -0.02 5.46 16 Total: -1.00 -80.37 315.02 4.57 -75.80 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.04 Total: 7.34 kcal Atomic # 6 Polarization: 21.86 SS G_CDS: 6.51 Total: 28.36 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -5.02 Total: -116.58 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: 0.33 Total: -40.63 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.71 Total: 45.70 kcal Total: -80.37 4.57 -75.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981056408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.519 kcal (2) G-P(sol) polarization free energy of solvation -80.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds