Wall clock time and date at job start Tue Mar 31 2020 04:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 O 1.20928 * 124.56745 * 2 1 4 4 C 1.34168 * 112.19028 * 180.12488 * 3 2 1 5 5 C 1.48208 * 126.38218 * 179.84851 * 4 3 2 6 6 O 1.21493 * 120.00063 * 173.37712 * 5 4 3 7 7 N 1.34781 * 119.99715 * 353.37308 * 5 4 3 8 8 C 1.46925 * 120.63266 * 354.59702 * 7 5 4 9 9 C 1.53197 * 108.77425 * 126.40977 * 8 7 5 10 10 C 1.53038 * 109.31187 * 54.63696 * 9 8 7 11 11 C 1.53043 * 109.53659 * 298.63059 * 10 9 8 12 12 H 1.08997 * 109.50010 * 301.38257 * 11 10 9 13 13 N 1.46506 * 109.49653 * 181.31721 * 11 10 9 14 14 C 1.36933 * 119.99673 * 155.00476 * 13 11 10 15 15 H 1.07999 * 120.00026 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00033 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99847 * 359.72187 * 16 14 13 18 18 Si 1.86798 * 120.00147 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47230 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46885 * 120.00049 * 18 16 14 21 21 H 1.48498 * 109.47259 * 239.99840 * 18 16 14 22 22 C 1.46922 * 120.62748 * 174.61638 * 7 5 4 23 23 C 1.36315 * 107.23259 * 359.58592 * 4 3 2 24 24 C 1.34826 * 124.56695 * 179.66091 * 2 1 3 25 25 O 1.21974 * 127.15186 * 0.02562 * 24 2 1 26 26 H 1.08996 * 109.47556 * 270.33439 * 1 2 3 27 27 H 1.09010 * 109.46977 * 30.33998 * 1 2 3 28 28 H 1.09006 * 109.47156 * 150.33604 * 1 2 3 29 29 H 1.09001 * 109.58852 * 6.62738 * 8 7 5 30 30 H 1.08996 * 109.58583 * 246.19477 * 8 7 5 31 31 H 1.08994 * 109.49753 * 294.68093 * 9 8 7 32 32 H 1.09000 * 109.49472 * 174.58311 * 9 8 7 33 33 H 1.09001 * 109.46224 * 178.61537 * 10 9 8 34 34 H 1.08996 * 109.45101 * 58.64328 * 10 9 8 35 35 H 0.96993 * 119.99954 * 335.00001 * 13 11 10 36 36 H 0.97000 * 119.99839 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.58713 * 113.79774 * 22 7 5 38 38 H 1.08999 * 109.58874 * 353.37354 * 22 7 5 39 39 H 1.07999 * 127.99567 * 180.20844 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4616 0.7082 -0.0027 5 6 4.5760 1.6852 -0.0067 6 8 5.7221 1.3000 0.1125 7 7 4.3180 3.0011 -0.1425 8 6 2.9517 3.4729 -0.4056 9 6 2.5825 4.5250 0.6449 10 6 3.6400 5.6313 0.6466 11 6 5.0014 5.0374 1.0156 12 1 4.9390 4.5663 1.9965 13 7 6.0069 6.1024 1.0476 14 6 7.1322 5.9585 1.8145 15 1 7.2782 5.0602 2.3960 16 6 8.0848 6.9677 1.8454 17 7 7.9090 8.0606 1.1332 18 14 9.6196 6.7718 2.8921 19 1 9.5813 5.4595 3.5859 20 1 10.8225 6.8373 2.0238 21 1 9.6753 7.8628 3.8980 22 6 5.3980 3.9910 -0.0308 23 6 3.5770 -0.6500 0.0048 24 6 2.2299 -1.1102 0.0066 25 8 1.8473 -2.2684 0.0130 26 1 -0.3634 0.0060 1.0276 27 1 -0.3633 0.8870 -0.5192 28 1 -0.3634 -0.8930 -0.5086 29 1 2.2574 2.6349 -0.3431 30 1 2.9035 3.9167 -1.3999 31 1 2.5427 4.0582 1.6290 32 1 1.6091 4.9527 0.4049 33 1 3.3668 6.3938 1.3761 34 1 3.6966 6.0808 -0.3447 35 1 5.8756 6.9092 0.5257 36 1 8.5748 8.7657 1.1545 37 1 5.5493 4.4770 -0.9945 38 1 6.3178 3.4950 0.2790 39 1 4.4813 -1.2404 0.0083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999021451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:22 Heat of formation + Delta-G solvation = 39.425673 kcal Electronic energy + Delta-G solvation = -24169.492701 eV Core-core repulsion = 20504.049971 eV Total energy + Delta-G solvation = -3665.442730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.31510 -40.16720 -38.35502 -37.63488 -34.85953 -34.35778 -32.55605 -32.39764 -31.34278 -29.04038 -27.86961 -25.80470 -24.19708 -23.74628 -22.92242 -22.03470 -20.60958 -19.58203 -18.62884 -18.22970 -17.35466 -17.18105 -16.28098 -15.52196 -15.42485 -15.04583 -14.74717 -14.47319 -14.14317 -14.04982 -13.85672 -13.71861 -13.62439 -13.49549 -13.22702 -12.86758 -12.58274 -12.39402 -11.49238 -11.12413 -10.92828 -10.75017 -10.73503 -10.60491 -10.27517 -10.23712 -10.17423 -9.94463 -9.76050 -9.21640 -8.76932 -8.61320 -7.10601 -5.86799 -3.17317 0.38091 1.32074 2.41502 2.59349 2.88738 3.14452 3.40065 3.47065 3.48793 4.14142 4.42865 4.50864 4.70223 4.73550 4.80741 4.86755 4.92366 5.03347 5.09031 5.35587 5.36503 5.42941 5.60686 5.66859 5.73910 5.81729 5.89933 6.01473 6.04625 6.20638 6.29559 6.47270 6.66450 6.83112 7.17612 7.39422 7.64405 7.72905 7.87476 8.30811 9.43265 9.95307 10.30421 11.35159 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.027373 B = 0.003598 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.675448 B = 7779.932649 C = 8504.340222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.460 5.460 3 O -0.003 6.003 4 C 0.040 3.960 5 C 0.591 3.409 6 O -0.497 6.497 7 N -0.588 5.588 8 C 0.096 3.904 9 C -0.128 4.128 10 C -0.128 4.128 11 C 0.168 3.832 12 H 0.054 0.946 13 N -0.716 5.716 14 C -0.247 4.247 15 H 0.073 0.927 16 C -0.008 4.008 17 N -0.930 5.930 18 Si 0.907 3.093 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.091 3.909 23 C -0.242 4.242 24 C 0.483 3.517 25 O -0.527 6.527 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.636 -10.595 -4.450 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.226 5.226 3 O -0.012 6.012 4 C -0.018 4.018 5 C 0.374 3.626 6 O -0.372 6.372 7 N -0.320 5.320 8 C -0.027 4.027 9 C -0.167 4.167 10 C -0.166 4.166 11 C 0.056 3.944 12 H 0.072 0.928 13 N -0.356 5.356 14 C -0.378 4.378 15 H 0.091 0.909 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.738 3.262 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.218 1.218 22 C -0.033 4.033 23 C -0.267 4.267 24 C 0.281 3.719 25 O -0.408 6.408 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.221 0.779 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -17.357 -11.203 -4.254 21.092 hybrid contribution 0.842 0.272 0.318 0.940 sum -16.515 -10.932 -3.936 20.193 Atomic orbital electron populations 1.22112 0.70978 1.05520 1.04409 1.46222 1.06003 1.00372 1.69975 1.84260 1.15467 1.20063 1.81385 1.23709 0.81549 0.96499 1.00018 1.16979 0.85431 0.81323 0.78899 1.90899 1.18573 1.77808 1.49915 1.48328 1.10711 1.04998 1.67964 1.22246 0.82200 0.98495 0.99719 1.21873 0.99260 0.96429 0.99123 1.21855 0.94915 0.97538 1.02303 1.20507 0.88462 0.89455 0.95957 0.92839 1.42386 1.20749 1.17319 1.55157 1.19315 0.96531 1.01947 1.20016 0.90875 1.24763 0.99003 0.96486 1.00224 1.69670 1.36211 1.07814 1.44073 0.86114 0.83083 0.77376 0.79621 1.20359 1.21704 1.21783 1.23092 0.89483 0.89158 1.01567 1.23319 0.99647 0.93406 1.10308 1.18333 0.86711 0.85474 0.81356 1.90956 1.79142 1.15968 1.54718 0.90173 0.88876 0.87803 0.88888 0.90458 0.91382 0.90629 0.91071 0.91807 0.77942 0.93403 0.91124 0.88625 0.79056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.57 11.22 59.85 0.67 1.24 16 2 N -0.46 -4.56 3.68 -69.77 -0.26 -4.82 16 3 O 0.00 -0.03 7.44 16.83 0.13 0.09 16 4 C 0.04 0.49 6.94 -36.18 -0.25 0.24 16 5 C 0.59 8.69 7.71 -12.16 -0.09 8.60 16 6 O -0.50 -9.01 16.34 5.37 0.09 -8.93 16 7 N -0.59 -8.12 2.97 -173.75 -0.52 -8.63 16 8 C 0.10 0.98 6.34 -3.71 -0.02 0.95 16 9 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 10 C -0.13 -1.78 5.35 -26.69 -0.14 -1.92 16 11 C 0.17 3.04 2.92 -67.80 -0.20 2.84 16 12 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 13 N -0.72 -16.73 5.12 -53.30 -0.27 -17.00 16 14 C -0.25 -6.59 9.93 -15.06 -0.15 -6.74 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 17 N -0.93 -27.07 13.06 55.49 0.72 -26.35 16 18 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 C 0.09 1.54 6.00 -3.71 -0.02 1.52 16 23 C -0.24 -3.03 10.94 -38.69 -0.42 -3.45 16 24 C 0.48 6.29 8.02 -14.66 -0.12 6.17 16 25 O -0.53 -8.40 17.84 4.94 0.09 -8.31 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.26 8.14 -51.92 -0.42 -0.16 16 28 H 0.10 0.53 8.03 -51.93 -0.42 0.11 16 29 H 0.09 0.82 3.83 -54.62 -0.21 0.61 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.39 9.53 7.80 -40.82 -0.32 9.21 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.10 1.90 7.04 -51.93 -0.37 1.54 16 39 H 0.19 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -33.13 328.40 -6.18 -39.32 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.08 Total: 5.07 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -1.01 Total: 7.64 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.32 Total: -56.80 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.30 Total: -17.15 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.13 -6.18 -39.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999021451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.741 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds