Wall clock time and date at job start Tue Mar 31 2020 04:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 O 1.20928 * 124.56745 * 2 1 4 4 C 1.34168 * 112.19028 * 180.12488 * 3 2 1 5 5 C 1.48208 * 126.38218 * 179.84851 * 4 3 2 6 6 O 1.21493 * 120.00063 * 173.37712 * 5 4 3 7 7 N 1.34781 * 119.99715 * 353.37308 * 5 4 3 8 8 C 1.46925 * 120.63266 * 354.59702 * 7 5 4 9 9 C 1.53197 * 108.77425 * 126.40977 * 8 7 5 10 10 C 1.53038 * 109.31187 * 54.63696 * 9 8 7 11 11 C 1.53043 * 109.53659 * 298.63059 * 10 9 8 12 12 H 1.08997 * 109.50010 * 301.38257 * 11 10 9 13 13 N 1.46506 * 109.49653 * 181.31721 * 11 10 9 14 14 C 1.36933 * 119.99673 * 155.00476 * 13 11 10 15 15 H 1.07999 * 120.00026 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00033 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99847 * 359.72187 * 16 14 13 18 18 Si 1.86798 * 120.00147 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47230 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46885 * 120.00049 * 18 16 14 21 21 H 1.48498 * 109.47259 * 239.99840 * 18 16 14 22 22 C 1.46922 * 120.62748 * 174.61638 * 7 5 4 23 23 C 1.36315 * 107.23259 * 359.58592 * 4 3 2 24 24 C 1.34826 * 124.56695 * 179.66091 * 2 1 3 25 25 O 1.21974 * 127.15186 * 0.02562 * 24 2 1 26 26 H 1.08996 * 109.47556 * 270.33439 * 1 2 3 27 27 H 1.09010 * 109.46977 * 30.33998 * 1 2 3 28 28 H 1.09006 * 109.47156 * 150.33604 * 1 2 3 29 29 H 1.09001 * 109.58852 * 6.62738 * 8 7 5 30 30 H 1.08996 * 109.58583 * 246.19477 * 8 7 5 31 31 H 1.08994 * 109.49753 * 294.68093 * 9 8 7 32 32 H 1.09000 * 109.49472 * 174.58311 * 9 8 7 33 33 H 1.09001 * 109.46224 * 178.61537 * 10 9 8 34 34 H 1.08996 * 109.45101 * 58.64328 * 10 9 8 35 35 H 0.96993 * 119.99954 * 335.00001 * 13 11 10 36 36 H 0.97000 * 119.99839 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.58713 * 113.79774 * 22 7 5 38 38 H 1.08999 * 109.58874 * 353.37354 * 22 7 5 39 39 H 1.07999 * 127.99567 * 180.20844 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4616 0.7082 -0.0027 5 6 4.5760 1.6852 -0.0067 6 8 5.7221 1.3000 0.1125 7 7 4.3180 3.0011 -0.1425 8 6 2.9517 3.4729 -0.4056 9 6 2.5825 4.5250 0.6449 10 6 3.6400 5.6313 0.6466 11 6 5.0014 5.0374 1.0156 12 1 4.9390 4.5663 1.9965 13 7 6.0069 6.1024 1.0476 14 6 7.1322 5.9585 1.8145 15 1 7.2782 5.0602 2.3960 16 6 8.0848 6.9677 1.8454 17 7 7.9090 8.0606 1.1332 18 14 9.6196 6.7718 2.8921 19 1 9.5813 5.4595 3.5859 20 1 10.8225 6.8373 2.0238 21 1 9.6753 7.8628 3.8980 22 6 5.3980 3.9910 -0.0308 23 6 3.5770 -0.6500 0.0048 24 6 2.2299 -1.1102 0.0066 25 8 1.8473 -2.2684 0.0130 26 1 -0.3634 0.0060 1.0276 27 1 -0.3633 0.8870 -0.5192 28 1 -0.3634 -0.8930 -0.5086 29 1 2.2574 2.6349 -0.3431 30 1 2.9035 3.9167 -1.3999 31 1 2.5427 4.0582 1.6290 32 1 1.6091 4.9527 0.4049 33 1 3.3668 6.3938 1.3761 34 1 3.6966 6.0808 -0.3447 35 1 5.8756 6.9092 0.5257 36 1 8.5748 8.7657 1.1545 37 1 5.5493 4.4770 -0.9945 38 1 6.3178 3.4950 0.2790 39 1 4.4813 -1.2404 0.0083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999021451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:21 Heat of formation + Delta-G solvation = 15.871457 kcal Electronic energy + Delta-G solvation = -24170.514088 eV Core-core repulsion = 20504.049971 eV Total energy + Delta-G solvation = -3666.464118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.24947 -41.36973 -39.38262 -38.91179 -36.35386 -35.37052 -33.96644 -33.42728 -32.81427 -30.42341 -28.89910 -26.88615 -25.90599 -24.77816 -23.95872 -23.31381 -21.81765 -20.76643 -19.52842 -19.25227 -19.01684 -18.40016 -17.48917 -16.82320 -16.43739 -16.36361 -16.12610 -15.65752 -15.49165 -15.25149 -15.06300 -15.03421 -14.84567 -14.24950 -14.06091 -13.94504 -13.70108 -13.58593 -13.07658 -12.91246 -12.54324 -12.15895 -11.99372 -11.92165 -11.84928 -11.62882 -11.35030 -11.28452 -11.12223 -11.07362 -9.93661 -9.67610 -9.03659 -7.98008 -5.26901 -0.64377 0.45819 1.36200 1.45526 1.48101 1.51711 1.57277 1.79272 2.12336 2.54417 3.13846 3.36085 3.55447 3.74037 3.84172 3.98201 4.01265 4.16430 4.28194 4.31377 4.38117 4.39025 4.53352 4.64223 4.68057 4.70560 4.79102 4.83681 4.98231 5.05845 5.14697 5.31898 5.41599 5.46168 5.54118 6.03999 6.24813 6.41500 6.64595 6.88199 7.32417 8.04070 8.28449 9.24627 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.027373 B = 0.003598 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.675448 B = 7779.932649 C = 8504.340222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.446 5.446 3 O 0.020 5.980 4 C 0.044 3.956 5 C 0.593 3.407 6 O -0.540 6.540 7 N -0.584 5.584 8 C 0.093 3.907 9 C -0.118 4.118 10 C -0.120 4.120 11 C 0.165 3.835 12 H 0.037 0.963 13 N -0.728 5.728 14 C -0.244 4.244 15 H 0.069 0.931 16 C -0.066 4.066 17 N -0.963 5.963 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.293 1.293 21 H -0.290 1.290 22 C 0.106 3.894 23 C -0.246 4.246 24 C 0.473 3.527 25 O -0.564 6.564 26 H 0.097 0.903 27 H 0.128 0.872 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.379 0.621 36 H 0.252 0.748 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.324 -10.768 -4.750 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.209 5.209 3 O 0.010 5.990 4 C -0.015 4.015 5 C 0.377 3.623 6 O -0.418 6.418 7 N -0.315 5.315 8 C -0.028 4.028 9 C -0.157 4.157 10 C -0.158 4.158 11 C 0.055 3.945 12 H 0.056 0.944 13 N -0.367 5.367 14 C -0.376 4.376 15 H 0.087 0.913 16 C -0.259 4.259 17 N -0.613 5.613 18 Si 0.794 3.206 19 H -0.196 1.196 20 H -0.220 1.220 21 H -0.217 1.217 22 C -0.019 4.019 23 C -0.271 4.271 24 C 0.272 3.728 25 O -0.449 6.449 26 H 0.115 0.885 27 H 0.146 0.854 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.211 0.789 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -20.147 -11.388 -4.555 23.587 hybrid contribution 1.542 0.303 0.401 1.622 sum -18.605 -11.085 -4.154 22.052 Atomic orbital electron populations 1.22636 0.67851 1.07462 1.06216 1.46549 1.07303 0.99405 1.67626 1.84244 1.14492 1.19857 1.80396 1.23004 0.81937 0.95430 1.01099 1.17128 0.85461 0.81663 0.78055 1.90881 1.20553 1.78626 1.51708 1.48297 1.11585 1.04250 1.67403 1.22577 0.80039 0.99262 1.00892 1.21861 0.99630 0.95008 0.99175 1.21768 0.93151 0.98569 1.02348 1.20694 0.89666 0.88593 0.95529 0.94450 1.42515 1.21031 1.18456 1.54740 1.19569 0.97389 1.01269 1.19348 0.91311 1.25444 1.01784 0.96641 1.02011 1.69787 1.37046 1.08526 1.45912 0.85205 0.79859 0.77384 0.78121 1.19649 1.22034 1.21734 1.22534 0.89221 0.89179 1.00979 1.23437 1.00055 0.93650 1.09966 1.18332 0.87031 0.85625 0.81820 1.90936 1.79669 1.17346 1.56934 0.88451 0.85358 0.87497 0.86932 0.88256 0.91593 0.86582 0.91714 0.91038 0.78859 0.93871 0.90915 0.92153 0.78969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 11.22 127.77 1.43 2.06 16 2 N -0.45 -7.45 3.68 -492.73 -1.82 -9.26 16 3 O 0.02 0.33 7.44 70.41 0.52 0.85 16 4 C 0.04 1.00 6.94 24.47 0.17 1.17 16 5 C 0.59 16.98 7.71 86.89 0.67 17.65 16 6 O -0.54 -19.98 16.34 -3.69 -0.06 -20.04 16 7 N -0.58 -15.22 2.97 -821.92 -2.44 -17.67 16 8 C 0.09 1.53 6.34 86.36 0.55 2.07 16 9 C -0.12 -1.95 6.08 30.67 0.19 -1.76 16 10 C -0.12 -3.08 5.35 30.62 0.16 -2.92 16 11 C 0.17 5.93 2.92 45.07 0.13 6.06 16 12 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 13 N -0.73 -34.48 5.12 -322.55 -1.65 -36.14 16 14 C -0.24 -13.24 9.93 84.03 0.83 -12.40 16 15 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 16 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 17 N -0.96 -57.01 13.06 21.65 0.28 -56.72 16 18 Si 0.96 45.91 29.55 68.60 2.03 47.94 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 22 C 0.11 3.59 6.00 86.37 0.52 4.11 16 23 C -0.25 -5.96 10.94 22.84 0.25 -5.71 16 24 C 0.47 11.64 8.02 85.26 0.68 12.33 16 25 O -0.56 -17.65 17.84 -5.23 -0.09 -17.74 16 26 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.13 0.02 8.14 -2.38 -0.02 0.00 16 28 H 0.11 0.75 8.03 -2.38 -0.02 0.73 16 29 H 0.11 1.43 3.83 -44.98 -0.17 1.26 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.38 18.95 7.80 -92.71 -0.72 18.23 16 36 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.06 2.49 7.04 -2.39 -0.02 2.47 16 39 H 0.19 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -74.53 328.40 3.02 -71.50 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.20 Total: 17.87 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 6.06 Total: 19.41 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -5.63 Total: -119.79 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: 0.37 Total: -36.94 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -74.53 3.02 -71.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999021451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.376 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds