Wall clock time and date at job start Tue Mar 31 2020 04:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.50703 * 109.47171 * 180.02562 * 3 2 1 5 5 C 1.35313 * 126.66661 * 90.00560 * 4 3 2 6 6 C 1.42272 * 103.92168 * 180.02562 * 5 4 3 7 7 C 1.48335 * 126.93659 * 180.02562 * 6 5 4 8 8 O 1.21492 * 120.00071 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99725 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99821 * 179.97438 * 9 7 6 11 11 H 1.08998 * 112.85204 * 334.67074 * 10 9 7 12 12 C 1.53787 * 113.61216 * 105.86421 * 10 9 7 13 13 C 1.54047 * 86.98220 * 89.16190 * 12 10 9 14 14 H 1.09003 * 113.69827 * 139.99305 * 13 12 10 15 15 N 1.46500 * 113.61462 * 270.88061 * 13 12 10 16 16 C 1.36936 * 120.00735 * 252.49354 * 15 13 12 17 17 H 1.08003 * 119.99308 * 0.02562 * 16 15 13 18 18 C 1.38804 * 120.00564 * 179.97438 * 16 15 13 19 19 N 1.31625 * 119.99741 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00277 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46791 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47165 * 120.00186 * 20 18 16 23 23 H 1.48499 * 109.47223 * 240.00148 * 20 18 16 24 24 C 1.53779 * 113.61437 * 203.47195 * 10 9 7 25 25 N 1.30981 * 106.12295 * 359.97438 * 6 5 4 26 26 O 1.20907 * 111.44045 * 359.70650 * 25 6 5 27 27 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 29 29 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 30 30 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 31 31 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 32 32 H 1.08000 * 128.03702 * 359.97179 * 5 4 3 33 33 H 0.97001 * 120.00061 * 359.97438 * 9 7 6 34 34 H 1.08996 * 113.61319 * 203.66678 * 12 10 9 35 35 H 1.09002 * 113.61135 * 334.56722 * 12 10 9 36 36 H 0.97002 * 119.99810 * 72.49821 * 15 13 12 37 37 H 0.97003 * 119.99668 * 180.02562 * 19 18 16 38 38 H 1.08992 * 113.61582 * 25.43438 * 24 10 9 39 39 H 1.08996 * 113.61323 * 156.33830 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.3177 1.1229 -1.0864 6 6 5.6258 1.0185 -0.5368 7 6 6.9020 0.9178 -1.2862 8 8 6.8949 0.9190 -2.5011 9 7 8.0696 0.8250 -0.6192 10 6 9.3299 0.7250 -1.3593 11 1 9.2029 0.3042 -2.3567 12 6 10.1611 2.0187 -1.3378 13 6 10.8133 1.4819 -0.0495 14 1 11.8848 1.6726 0.0114 15 7 10.0980 1.8600 1.1718 16 6 10.6295 2.8004 2.0135 17 1 11.5759 3.2637 1.7766 18 6 9.9515 3.1590 3.1704 19 7 8.7979 2.5947 3.4587 20 14 10.6763 4.4423 4.3181 21 1 11.9714 4.9205 3.7710 22 1 9.7372 5.5864 4.4375 23 1 10.8963 3.8406 5.6577 24 6 10.4663 0.0717 -0.5551 25 7 5.4758 1.0303 0.7643 26 8 4.3112 1.1290 1.0740 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6886 1.8464 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 4.0332 1.1453 -2.1280 33 1 8.0753 0.8244 0.3508 34 1 10.8543 2.1062 -2.1744 35 1 9.5648 2.9183 -1.1850 36 1 9.2478 1.4441 1.3844 37 1 8.3239 2.8455 4.2670 38 1 10.1163 -0.5995 0.2291 39 1 11.2428 -0.3721 -1.1781 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022819086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:03 Heat of formation + Delta-G solvation = 29.054238 kcal Electronic energy + Delta-G solvation = -23531.760373 eV Core-core repulsion = 19865.867903 eV Total energy + Delta-G solvation = -3665.892469 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.01752 -39.84383 -38.26416 -37.91665 -33.97599 -33.68628 -32.99332 -32.19402 -29.88932 -28.00013 -25.90618 -25.40797 -25.14236 -24.10843 -22.80566 -22.02503 -19.97788 -18.99422 -17.86728 -17.79511 -17.33867 -16.61409 -16.53256 -16.15066 -15.61945 -15.23205 -14.79195 -14.69119 -14.21407 -14.05658 -13.75410 -13.24935 -13.14057 -12.95821 -12.49281 -12.09530 -12.03452 -11.86680 -11.50336 -11.42701 -10.90533 -10.82406 -10.37142 -10.20951 -10.16429 -10.14029 -10.07617 -9.77237 -9.63852 -9.60712 -8.93170 -8.64860 -7.05233 -5.82008 -3.12888 1.18994 1.61215 2.78475 3.17248 3.37324 3.40868 3.46690 3.48903 3.71236 4.08698 4.42590 4.55000 4.73860 4.86573 4.97816 5.00444 5.03937 5.06184 5.22948 5.32802 5.35374 5.40167 5.44179 5.50016 5.81162 5.85224 5.93820 6.11694 6.19251 6.31075 6.54277 6.65098 6.69123 6.78260 7.05340 7.67489 7.72528 8.13042 8.33226 8.38774 9.45435 9.99741 10.32622 11.39663 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.004183 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.313059 B = 6691.803458 C = 8340.003355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.147 3.853 4 C -0.052 4.052 5 C -0.154 4.154 6 C -0.035 4.035 7 C 0.602 3.398 8 O -0.537 6.537 9 N -0.683 5.683 10 C 0.121 3.879 11 H 0.094 0.906 12 C -0.187 4.187 13 C 0.164 3.836 14 H 0.068 0.932 15 N -0.705 5.705 16 C -0.248 4.248 17 H 0.074 0.926 18 C -0.010 4.010 19 N -0.926 5.926 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C -0.167 4.167 25 N -0.298 5.298 26 O 0.141 5.859 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.181 0.819 33 H 0.415 0.585 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.379 0.621 37 H 0.257 0.743 38 H 0.072 0.928 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.747 -4.565 -8.949 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.070 3.930 4 C -0.115 4.115 5 C -0.176 4.176 6 C -0.194 4.194 7 C 0.386 3.614 8 O -0.413 6.413 9 N -0.336 5.336 10 C 0.016 3.984 11 H 0.112 0.888 12 C -0.229 4.229 13 C 0.052 3.948 14 H 0.086 0.914 15 N -0.345 5.345 16 C -0.378 4.378 17 H 0.092 0.908 18 C -0.206 4.206 19 N -0.574 5.574 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 C -0.207 4.207 25 N 0.007 4.993 26 O 0.059 5.941 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.198 0.802 33 H 0.255 0.745 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.215 0.785 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.578 -4.680 -8.685 15.986 hybrid contribution -0.557 0.898 0.456 1.151 sum -13.135 -3.782 -8.229 15.955 Atomic orbital electron populations 1.22808 0.79918 1.03354 1.00390 1.87985 1.20363 1.26491 1.95551 1.20614 0.83255 0.85994 1.03133 1.23882 0.94989 1.06539 0.86081 1.22409 0.89798 1.04109 1.01273 1.23537 0.96813 1.08859 0.90200 1.16810 0.81646 0.76760 0.86220 1.90742 1.86759 1.51310 1.12468 1.45774 1.04836 1.71510 1.11445 1.21870 0.82197 0.98687 0.95631 0.88794 1.24355 0.99736 0.97633 1.01166 1.21264 0.95915 0.91220 0.86429 0.91363 1.42259 1.23752 1.47692 1.20832 1.19300 1.03548 1.14415 1.00578 0.90777 1.24785 0.97064 1.00262 0.98522 1.69662 1.15297 1.45440 1.26960 0.86098 0.78108 0.81005 0.80816 1.20518 1.21865 1.21770 1.23876 0.97461 0.99470 0.99901 1.74431 0.96676 1.12901 1.15342 1.84866 1.11449 1.64696 1.33080 0.89149 0.93496 0.93638 0.89466 0.90305 0.80165 0.74542 0.90153 0.91053 0.78546 0.93324 0.90976 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.83 10.69 -35.23 -0.38 -4.21 16 3 C 0.15 1.28 6.50 36.01 0.23 1.51 16 4 C -0.05 -0.67 7.10 -35.35 -0.25 -0.92 16 5 C -0.15 -2.17 10.92 -39.08 -0.43 -2.59 16 6 C -0.04 -0.63 7.19 -82.53 -0.59 -1.22 16 7 C 0.60 11.60 7.85 -12.10 -0.09 11.51 16 8 O -0.54 -10.93 16.57 5.37 0.09 -10.84 16 9 N -0.68 -13.16 5.12 -53.80 -0.28 -13.43 16 10 C 0.12 2.12 4.30 -67.12 -0.29 1.84 16 11 H 0.09 1.57 7.50 -51.93 -0.39 1.18 16 12 C -0.19 -3.40 7.70 -25.78 -0.20 -3.60 16 13 C 0.16 3.25 4.57 -66.98 -0.31 2.95 16 14 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 15 N -0.70 -17.47 5.18 -52.50 -0.27 -17.74 16 16 C -0.25 -6.81 9.97 -15.06 -0.15 -6.96 16 17 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 20 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 C -0.17 -2.76 7.58 -25.92 -0.20 -2.96 16 25 N -0.30 -5.57 11.84 33.29 0.39 -5.18 16 26 O 0.14 2.26 11.18 17.24 0.19 2.46 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 33 H 0.41 8.69 5.92 -40.82 -0.24 8.44 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.38 9.80 5.34 -40.82 -0.22 9.58 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 339.03 15.07 5.11 5.11 Total: -1.00 -33.20 339.03 -5.74 -38.94 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -5.04 Total: 13.97 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.26 Total: 0.48 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: 0.57 Total: -63.18 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.09 Total: -12.59 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.20 -5.74 -38.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022819086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.996 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds