Wall clock time and date at job start Tue Mar 31 2020 04:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33316 * 126.81390 * 2 1 4 4 N 1.28507 * 109.44045 * 179.97438 * 3 2 1 5 5 N 1.28718 * 110.63813 * 359.71320 * 4 3 2 6 6 H 0.97005 * 126.04045 * 180.29928 * 5 4 3 7 7 C 1.37006 * 126.81218 * 179.97438 * 2 1 3 8 8 C 1.47234 * 127.19279 * 0.02986 * 7 2 1 9 9 O 1.21619 * 119.99587 * 359.97438 * 8 7 2 10 10 N 1.34769 * 120.00130 * 179.97438 * 8 7 2 11 11 C 1.46507 * 119.99749 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46643 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.51622 * 305.10340 * 12 11 10 14 14 C 1.53296 * 109.51126 * 185.00110 * 12 11 10 15 15 N 1.47155 * 108.38905 * 187.72558 * 14 12 11 16 16 C 1.36935 * 120.98166 * 230.51925 * 15 14 12 17 17 H 1.08000 * 119.99733 * 153.64038 * 16 15 14 18 18 C 1.38812 * 120.00178 * 333.90407 * 16 15 14 19 19 N 1.31625 * 119.99828 * 342.82363 * 18 16 15 20 20 Si 1.86796 * 120.00178 * 162.81297 * 18 16 15 21 21 H 1.48500 * 109.46865 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46879 * 120.00248 * 20 18 16 23 23 H 1.48497 * 109.47381 * 240.00588 * 20 18 16 24 24 C 1.47150 * 118.03359 * 50.78400 * 15 14 12 25 25 C 1.53717 * 108.16586 * 309.16320 * 24 15 14 26 26 O 1.42961 * 109.55561 * 65.23565 * 12 11 10 27 27 H 1.09001 * 109.47275 * 270.02725 * 1 2 3 28 28 H 1.09004 * 109.47285 * 30.03268 * 1 2 3 29 29 H 1.09002 * 109.47098 * 150.03386 * 1 2 3 30 30 H 0.96995 * 120.00313 * 0.02562 * 10 8 7 31 31 H 1.08998 * 109.46881 * 60.00830 * 11 10 8 32 32 H 1.08996 * 109.47085 * 299.99902 * 11 10 8 33 33 H 1.09002 * 109.68190 * 68.00154 * 14 12 11 34 34 H 1.09000 * 109.71447 * 307.46705 * 14 12 11 35 35 H 0.96996 * 119.99943 * 179.97438 * 19 18 16 36 36 H 1.09000 * 109.67958 * 68.94202 * 24 15 14 37 37 H 1.08994 * 109.68355 * 189.49072 * 24 15 14 38 38 H 1.08994 * 109.65428 * 292.57524 * 25 24 15 39 39 H 1.08995 * 109.48564 * 172.39796 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0673 0.0000 4 7 3.5323 0.6836 0.0005 5 7 3.6056 -0.6015 0.0069 6 1 4.4212 -1.1266 0.0128 7 6 2.3279 -1.0969 0.0005 8 6 1.9222 -2.5122 0.0005 9 8 0.7421 -2.8065 0.0005 10 7 2.8585 -3.4816 0.0005 11 6 2.4547 -4.8899 0.0011 12 6 3.7008 -5.7776 0.0016 13 1 4.3402 -5.5081 -0.8389 14 6 3.2826 -7.2471 -0.1237 15 7 4.4759 -8.0871 0.0659 16 6 4.7942 -9.0722 -0.8305 17 1 5.8214 -9.3850 -0.9468 18 6 3.7975 -9.6648 -1.5935 19 7 2.5361 -9.5420 -1.2384 20 14 4.2464 -10.6363 -3.1245 21 1 5.7205 -10.6244 -3.3037 22 1 3.7774 -12.0375 -2.9768 23 1 3.5983 -10.0197 -4.3098 24 6 5.3136 -7.8412 1.2504 25 6 5.6359 -6.3393 1.3061 26 8 4.4178 -5.5951 1.2249 27 1 -0.3634 0.0005 1.0277 28 1 -0.3634 0.8897 -0.5143 29 1 -0.3633 -0.8903 -0.5133 30 1 3.7996 -3.2469 0.0009 31 1 1.8604 -5.0978 -0.8887 32 1 1.8609 -5.0973 0.8913 33 1 2.8614 -7.4258 -1.1130 34 1 2.5414 -7.4849 0.6392 35 1 1.8396 -9.9558 -1.7717 36 1 4.7737 -8.1373 2.1498 37 1 6.2379 -8.4135 1.1716 38 1 6.2822 -6.0718 0.4702 39 1 6.1406 -6.1102 2.2446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035463577.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:22 Heat of formation + Delta-G solvation = 35.848306 kcal Electronic energy + Delta-G solvation = -23739.388990 eV Core-core repulsion = 20106.083884 eV Total energy + Delta-G solvation = -3633.305105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.61617 -39.73372 -38.54473 -35.27939 -34.54926 -34.04976 -32.68239 -31.46035 -31.00988 -28.29686 -27.39696 -25.82093 -24.24011 -23.42026 -22.51650 -21.63031 -20.89674 -19.90265 -19.03269 -17.22242 -16.76690 -16.71981 -16.13210 -15.99640 -15.24138 -14.78882 -14.57342 -14.38518 -14.04341 -13.95040 -13.39415 -13.26051 -13.14007 -12.93455 -12.88069 -12.44606 -12.11129 -11.69523 -11.41131 -11.21764 -10.96269 -10.84792 -10.81483 -10.56725 -10.34332 -10.31297 -10.11895 -9.79580 -9.58310 -9.24614 -9.16982 -8.65761 -6.87717 -5.95276 -3.39351 0.64312 2.02183 2.16455 2.82910 2.89531 3.26950 3.35372 3.37024 4.01296 4.06974 4.34309 4.36917 4.63326 4.78973 5.01296 5.24691 5.38412 5.42808 5.46038 5.51240 5.68245 5.70001 5.77427 5.82661 5.94930 5.97498 6.09182 6.18104 6.27531 6.32643 6.41800 6.66167 6.92727 7.19396 7.33761 7.60729 7.67539 7.85883 8.00656 8.21856 8.99758 9.62551 10.19054 11.12846 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023419 B = 0.003370 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.320933 B = 8306.114475 C = 8837.753893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.059 3.941 3 N -0.271 5.271 4 N -0.047 5.047 5 N -0.375 5.375 6 H 0.451 0.549 7 C -0.067 4.067 8 C 0.591 3.409 9 O -0.512 6.512 10 N -0.714 5.714 11 C 0.132 3.868 12 C 0.053 3.947 13 H 0.057 0.943 14 C 0.152 3.848 15 N -0.594 5.594 16 C -0.259 4.259 17 H 0.070 0.930 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.287 1.287 24 C 0.108 3.892 25 C 0.050 3.950 26 O -0.392 6.392 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.396 0.604 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.033 0.967 35 H 0.256 0.744 36 H 0.028 0.972 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.771 14.638 2.570 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 N -0.138 5.138 4 N -0.029 5.029 5 N -0.102 5.102 6 H 0.298 0.702 7 C -0.201 4.201 8 C 0.374 3.626 9 O -0.386 6.386 10 N -0.364 5.364 11 C 0.009 3.991 12 C -0.006 4.006 13 H 0.075 0.925 14 C 0.026 3.974 15 N -0.318 5.318 16 C -0.388 4.388 17 H 0.087 0.913 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.214 1.214 24 C -0.018 4.018 25 C -0.028 4.028 26 O -0.311 6.311 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.230 0.770 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.376 15.767 2.626 16.043 hybrid contribution 0.954 -1.996 -0.908 2.391 sum 2.330 13.771 1.717 14.072 Atomic orbital electron populations 1.20334 0.84737 1.04495 1.03890 1.22347 0.98682 0.86902 1.00156 1.74940 0.95193 1.26029 1.17638 1.78180 1.16046 0.92263 1.16376 1.45484 1.08921 1.07005 1.48786 0.70179 1.22197 0.84939 0.96707 1.16255 1.16716 0.86156 0.82058 0.77642 1.90851 1.16381 1.81786 1.49585 1.45912 1.09017 1.07159 1.74329 1.21557 0.96794 0.76909 1.03820 1.23170 0.91946 0.98802 0.86691 0.92537 1.21304 0.89118 0.83847 1.03156 1.44072 1.27515 1.37278 1.22942 1.19220 0.92474 1.12900 1.14173 0.91266 1.25068 0.95486 0.98344 1.00623 1.70020 0.99073 1.47018 1.38341 0.86194 0.77952 0.79485 0.82968 1.20216 1.21524 1.21378 1.21687 0.95842 0.93271 0.90983 1.23101 0.85655 0.93737 1.00334 1.87774 1.36541 1.68332 1.38491 0.89891 0.90309 0.88599 0.77032 0.89190 0.89990 0.88477 0.94897 0.93359 0.95421 0.91878 0.93806 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.93 36.01 0.36 -0.40 16 2 C 0.06 0.71 7.29 -82.40 -0.60 0.11 16 3 N -0.27 -3.53 12.35 33.51 0.41 -3.11 16 4 N -0.05 -0.55 13.35 60.35 0.81 0.25 16 5 N -0.37 -3.49 6.98 33.31 0.23 -3.26 16 6 H 0.45 2.52 8.32 -190.32 -1.58 0.93 16 7 C -0.07 -0.77 7.17 -82.33 -0.59 -1.36 16 8 C 0.59 7.62 7.81 -12.61 -0.10 7.52 16 9 O -0.51 -8.03 14.99 5.26 0.08 -7.95 16 10 N -0.71 -8.51 5.50 -61.44 -0.34 -8.85 16 11 C 0.13 1.95 5.35 -4.04 -0.02 1.92 16 12 C 0.05 0.90 2.81 -26.58 -0.07 0.83 16 13 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 14 C 0.15 3.35 4.73 -3.53 -0.02 3.33 16 15 N -0.59 -14.03 3.04 -171.57 -0.52 -14.55 16 16 C -0.26 -6.71 9.65 -15.06 -0.15 -6.86 16 17 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 18 C 0.00 0.10 4.94 -17.43 -0.09 0.02 16 19 N -0.90 -24.86 11.15 55.49 0.62 -24.24 16 20 Si 0.90 20.66 29.59 -169.99 -5.03 15.63 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.11 2.12 6.76 -3.31 -0.02 2.09 16 25 C 0.05 0.79 7.00 37.53 0.26 1.05 16 26 O -0.39 -6.54 10.34 -35.23 -0.36 -6.90 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.10 1.02 6.61 -51.93 -0.34 0.68 16 30 H 0.40 3.73 7.74 -40.82 -0.32 3.42 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.10 2.36 6.14 -51.93 -0.32 2.04 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -31.53 328.27 -6.52 -38.05 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.33 Total: 1.72 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.04 Total: 8.27 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 1.21 Total: -53.76 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.29 Total: -14.86 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.53 -6.52 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035463577.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.900 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds