Wall clock time and date at job start Tue Mar 31 2020 04:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33319 * 126.81641 * 2 1 4 4 N 1.28507 * 109.43806 * 180.02562 * 3 2 1 5 5 N 1.28706 * 110.64277 * 359.97438 * 4 3 2 6 6 H 0.96998 * 126.03849 * 180.02562 * 5 4 3 7 7 C 1.37007 * 126.81030 * 179.68458 * 2 1 3 8 8 C 1.47230 * 127.19368 * 0.02562 * 7 2 1 9 9 O 1.21629 * 119.99708 * 359.97438 * 8 7 2 10 10 N 1.34770 * 120.00146 * 179.97438 * 8 7 2 11 11 C 1.46501 * 119.99765 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46916 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.51344 * 60.00102 * 12 11 10 14 14 C 1.53304 * 109.51355 * 180.10370 * 12 11 10 15 15 N 1.47143 * 108.38453 * 172.22436 * 14 12 11 16 16 C 1.36939 * 120.98156 * 129.48461 * 15 14 12 17 17 H 1.08002 * 120.00399 * 206.21803 * 16 15 14 18 18 C 1.38816 * 120.00080 * 26.21921 * 16 15 14 19 19 N 1.31628 * 119.99528 * 16.91920 * 18 16 15 20 20 Si 1.86799 * 120.00386 * 196.91581 * 18 16 15 21 21 H 1.48507 * 109.46724 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46749 * 119.99857 * 20 18 16 23 23 H 1.48493 * 109.47114 * 240.00176 * 20 18 16 24 24 C 1.47151 * 118.04114 * 309.46407 * 15 14 12 25 25 C 1.53295 * 108.38450 * 50.53335 * 24 15 14 26 26 O 1.42958 * 109.51414 * 299.89664 * 12 11 10 27 27 H 1.08994 * 109.47553 * 90.02377 * 1 2 3 28 28 H 1.09006 * 109.47379 * 210.02988 * 1 2 3 29 29 H 1.09006 * 109.46781 * 330.02352 * 1 2 3 30 30 H 0.96994 * 120.00213 * 359.97438 * 10 8 7 31 31 H 1.09000 * 109.47278 * 299.99625 * 11 10 8 32 32 H 1.08997 * 109.47407 * 59.99927 * 11 10 8 33 33 H 1.09006 * 109.67504 * 291.95088 * 14 12 11 34 34 H 1.08994 * 109.67833 * 52.49834 * 14 12 11 35 35 H 0.96996 * 119.99547 * 179.97438 * 19 18 16 36 36 H 1.08996 * 109.68423 * 170.26010 * 24 15 14 37 37 H 1.08999 * 109.67768 * 290.77888 * 24 15 14 38 38 H 1.09000 * 109.50966 * 67.62643 * 25 24 15 39 39 H 1.08996 * 109.51652 * 187.72835 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5323 0.6835 -0.0005 5 7 3.6056 -0.6015 -0.0004 6 1 4.4212 -1.1266 -0.0003 7 6 2.3279 -1.0969 0.0060 8 6 1.9222 -2.5122 0.0133 9 8 0.7420 -2.8064 0.0149 10 7 2.8584 -3.4816 0.0182 11 6 2.4546 -4.8898 0.0260 12 6 3.7007 -5.7776 0.0310 13 1 4.2952 -5.5656 0.9196 14 6 3.2793 -7.2516 0.0365 15 7 4.4821 -8.0789 -0.1477 16 6 4.7562 -9.1221 0.6960 17 1 5.7764 -9.4451 0.8417 18 6 3.7227 -9.7645 1.3639 19 7 2.4807 -9.6136 0.9550 20 14 4.0944 -10.8430 2.8431 21 1 5.5575 -10.8469 3.0975 22 1 3.3866 -10.3099 4.0348 23 1 3.6347 -12.2290 2.5731 24 6 5.3816 -7.7524 -1.2656 25 6 5.7006 -6.2541 -1.2078 26 8 4.4794 -5.5142 -1.1386 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3634 -0.8898 0.5143 29 1 -0.3633 0.8903 0.5135 30 1 3.7995 -3.2469 0.0166 31 1 1.8609 -5.0927 0.9174 32 1 1.8602 -5.1023 -0.8626 33 1 2.8084 -7.4951 0.9890 34 1 2.5785 -7.4360 -0.7777 35 1 1.7586 -10.0627 1.4215 36 1 6.3030 -8.3277 -1.1754 37 1 4.8928 -7.9880 -2.2109 38 1 6.3032 -6.0441 -0.3241 39 1 6.2525 -5.9646 -2.1020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035463578.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:25 Heat of formation + Delta-G solvation = 35.834865 kcal Electronic energy + Delta-G solvation = -23747.823993 eV Core-core repulsion = 20114.518305 eV Total energy + Delta-G solvation = -3633.305688 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.61368 -39.73136 -38.55524 -35.27496 -34.54775 -34.04497 -32.67990 -31.46987 -31.01741 -28.29919 -27.41807 -25.81890 -24.23836 -23.41890 -22.51383 -21.62265 -20.88141 -19.89730 -19.03579 -17.22510 -16.76549 -16.71530 -16.16039 -15.95944 -15.25873 -14.78880 -14.57014 -14.38168 -14.04981 -13.95155 -13.39418 -13.26111 -13.14659 -12.94566 -12.88198 -12.43655 -12.10783 -11.69518 -11.40846 -11.21526 -10.96378 -10.84655 -10.81104 -10.56216 -10.34254 -10.31685 -10.11295 -9.79674 -9.57975 -9.25925 -9.15382 -8.65997 -6.87846 -5.95213 -3.39201 0.64705 2.02469 2.16927 2.83295 2.90021 3.27060 3.35426 3.37126 4.01260 4.06522 4.34304 4.37684 4.64201 4.79355 5.01519 5.24688 5.37815 5.42155 5.46183 5.51460 5.68489 5.70668 5.77533 5.82602 5.94894 5.98617 6.09440 6.18022 6.27664 6.32529 6.41536 6.65903 6.92841 7.20502 7.33843 7.60457 7.66905 7.86684 8.01017 8.21887 8.99897 9.62608 10.18954 11.13031 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024310 B = 0.003357 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.528443 B = 8339.013874 C = 8913.763419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.059 3.941 3 N -0.271 5.271 4 N -0.047 5.047 5 N -0.374 5.374 6 H 0.451 0.549 7 C -0.067 4.067 8 C 0.591 3.409 9 O -0.513 6.513 10 N -0.713 5.713 11 C 0.132 3.868 12 C 0.053 3.947 13 H 0.057 0.943 14 C 0.153 3.847 15 N -0.594 5.594 16 C -0.259 4.259 17 H 0.070 0.930 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.288 1.288 24 C 0.108 3.892 25 C 0.050 3.950 26 O -0.392 6.392 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.397 0.603 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.033 0.967 35 H 0.256 0.744 36 H 0.063 0.937 37 H 0.027 0.973 38 H 0.043 0.957 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 14.785 -1.831 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 N -0.138 5.138 4 N -0.029 5.029 5 N -0.102 5.102 6 H 0.298 0.702 7 C -0.201 4.201 8 C 0.374 3.626 9 O -0.387 6.387 10 N -0.363 5.363 11 C 0.010 3.990 12 C -0.006 4.006 13 H 0.075 0.925 14 C 0.026 3.974 15 N -0.318 5.318 16 C -0.388 4.388 17 H 0.087 0.913 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.215 1.215 24 C -0.018 4.018 25 C -0.028 4.028 26 O -0.312 6.312 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.231 0.769 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.517 15.917 -1.899 16.101 hybrid contribution 0.906 -2.065 0.865 2.415 sum 2.423 13.852 -1.034 14.100 Atomic orbital electron populations 1.20335 0.84742 1.04492 1.03894 1.22347 0.98679 0.86905 1.00166 1.74942 0.95192 1.26029 1.17648 1.78175 1.16049 0.92272 1.16382 1.45481 1.08926 1.06999 1.48770 0.70170 1.22196 0.84934 0.96707 1.16248 1.16722 0.86158 0.82066 0.77655 1.90852 1.16382 1.81787 1.49636 1.45879 1.09066 1.07115 1.74260 1.21565 0.96740 0.76962 1.03782 1.23186 0.91150 0.98498 0.87814 0.92511 1.21305 0.89102 0.83954 1.03044 1.44052 1.24564 1.33374 1.29802 1.19225 0.92359 1.08465 1.18716 0.91258 1.25072 0.95661 0.98196 1.00607 1.70021 0.98864 1.45735 1.39850 0.86188 0.77832 0.79969 0.82569 1.20218 1.21376 1.21527 1.21600 0.95268 0.93105 0.91813 1.23020 0.85570 0.93848 1.00359 1.87760 1.34283 1.65758 1.43371 0.89892 0.88593 0.90315 0.76950 0.89285 0.90015 0.88455 0.94909 0.93361 0.91885 0.95469 0.93825 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 9.94 36.01 0.36 -0.40 16 2 C 0.06 0.71 7.30 -82.39 -0.60 0.11 16 3 N -0.27 -3.53 12.35 33.51 0.41 -3.12 16 4 N -0.05 -0.56 13.35 60.35 0.81 0.25 16 5 N -0.37 -3.50 6.97 33.31 0.23 -3.27 16 6 H 0.45 2.54 8.32 -190.34 -1.58 0.96 16 7 C -0.07 -0.77 7.17 -82.33 -0.59 -1.36 16 8 C 0.59 7.63 7.81 -12.61 -0.10 7.53 16 9 O -0.51 -8.05 14.98 5.25 0.08 -7.97 16 10 N -0.71 -8.53 5.45 -61.45 -0.33 -8.86 16 11 C 0.13 1.95 5.37 -4.04 -0.02 1.93 16 12 C 0.05 0.90 2.86 -26.57 -0.08 0.82 16 13 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 14 C 0.15 3.35 4.73 -3.53 -0.02 3.33 16 15 N -0.59 -14.02 3.05 -171.83 -0.52 -14.54 16 16 C -0.26 -6.71 9.65 -15.06 -0.15 -6.86 16 17 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 18 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 19 N -0.90 -24.87 11.14 55.49 0.62 -24.25 16 20 Si 0.90 20.67 29.59 -169.99 -5.03 15.64 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 24 C 0.11 2.11 6.74 -3.53 -0.02 2.09 16 25 C 0.05 0.79 6.98 37.31 0.26 1.05 16 26 O -0.39 -6.49 10.14 -35.23 -0.36 -6.84 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 1.03 6.60 -51.93 -0.34 0.68 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.40 3.79 7.61 -40.82 -0.31 3.48 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.10 2.37 6.14 -51.93 -0.32 2.05 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.26 6.84 8.31 -40.82 -0.34 6.51 16 36 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -31.48 327.92 -6.52 -38.00 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.32 Total: 1.77 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.04 Total: 8.27 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 1.21 Total: -53.79 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.28 Total: -14.81 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.48 -6.52 -38.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035463578.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.830 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds