Wall clock time and date at job start Tue Mar 31 2020 04:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 O 1.20912 * 124.56870 * 2 1 4 4 C 1.34174 * 112.19164 * 179.97438 * 3 2 1 5 5 C 1.48200 * 126.38385 * 179.73948 * 4 3 2 6 6 O 1.21493 * 119.99962 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00322 * 0.02562 * 5 4 3 8 8 C 1.46493 * 120.00152 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47289 * 179.97438 * 8 7 5 10 10 C 1.53783 * 113.61711 * 274.13608 * 9 8 7 11 11 C 1.53951 * 87.01967 * 220.04749 * 10 9 8 12 12 N 1.46508 * 113.53617 * 270.80581 * 11 10 9 13 13 C 1.36932 * 120.00283 * 252.49884 * 12 11 10 14 14 H 1.08005 * 119.99722 * 359.97438 * 13 12 11 15 15 C 1.38807 * 120.00154 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00294 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99929 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46918 * 90.00157 * 17 15 13 19 19 H 1.48503 * 109.47402 * 209.99922 * 17 15 13 20 20 H 1.48499 * 109.47110 * 330.00109 * 17 15 13 21 21 C 1.53777 * 87.11481 * 25.36162 * 11 10 9 22 22 C 1.36311 * 107.22783 * 0.02562 * 4 3 2 23 23 C 1.34828 * 124.56092 * 179.97438 * 2 1 3 24 24 O 1.21974 * 127.15471 * 0.02562 * 23 2 1 25 25 H 1.09005 * 109.46300 * 0.02925 * 1 2 3 26 26 H 1.09000 * 109.47038 * 120.01872 * 1 2 3 27 27 H 1.08997 * 109.47289 * 240.02572 * 1 2 3 28 28 H 0.97005 * 119.99857 * 359.97438 * 7 5 4 29 29 H 1.08999 * 109.47168 * 299.99903 * 8 7 5 30 30 H 1.09001 * 109.47371 * 59.99949 * 8 7 5 31 31 H 1.09001 * 112.84793 * 45.33033 * 9 8 7 32 32 H 1.08998 * 113.61095 * 334.56360 * 10 9 8 33 33 H 1.08999 * 113.61518 * 105.46413 * 10 9 8 34 34 H 1.08999 * 113.74404 * 139.94236 * 11 10 9 35 35 H 0.97000 * 119.99435 * 72.49237 * 12 11 10 36 36 H 0.97002 * 120.00528 * 179.97438 * 16 15 13 37 37 H 1.09004 * 113.61236 * 220.09573 * 21 11 10 38 38 H 1.09000 * 113.61452 * 89.18752 * 21 11 10 39 39 H 1.08006 * 127.99473 * 179.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 8 2.1511 0.9956 0.0000 4 6 3.4617 0.7081 0.0006 5 6 4.5761 1.6850 -0.0047 6 8 5.7265 1.2942 -0.0040 7 7 4.3135 3.0069 -0.0102 8 6 5.4151 3.9726 -0.0160 9 6 4.8478 5.3935 -0.0222 10 6 4.5235 5.9212 -1.4298 11 6 5.0888 7.2756 -0.9648 12 7 4.0850 8.1493 -0.3520 13 6 3.6335 9.2519 -1.0268 14 1 4.0177 9.4777 -2.0107 15 6 2.6828 10.0799 -0.4461 16 7 2.2491 11.1401 -1.0945 17 14 2.0188 9.6897 1.2558 18 1 2.8628 10.3547 2.2808 19 1 0.6228 10.1836 1.3678 20 1 2.0430 8.2207 1.4717 21 6 5.9256 6.4875 0.0568 22 6 3.5770 -0.6502 0.0004 23 6 2.2299 -1.1103 0.0005 24 8 1.8473 -2.2685 0.0006 25 1 -0.3632 1.0278 -0.0005 26 1 -0.3633 -0.5141 -0.8898 27 1 -0.3634 -0.5134 0.8902 28 1 3.3950 3.3190 -0.0111 29 1 6.0282 3.8297 0.8738 30 1 6.0259 3.8218 -0.9061 31 1 4.0358 5.5281 0.6924 32 1 5.1106 5.4507 -2.2184 33 1 3.4567 5.9454 -1.6520 34 1 5.6877 7.7839 -1.7204 35 1 3.7402 7.9465 0.5316 36 1 1.5845 11.7185 -0.6888 37 1 5.9890 6.9683 1.0330 38 1 6.8967 6.1721 -0.3247 39 1 4.4813 -1.2407 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091002077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:37 Heat of formation + Delta-G solvation = 48.780284 kcal Electronic energy + Delta-G solvation = -23013.836330 eV Core-core repulsion = 19348.799246 eV Total energy + Delta-G solvation = -3665.037084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.47556 -40.21216 -38.81064 -38.48555 -35.17967 -34.69619 -33.36512 -32.60404 -30.83055 -29.02909 -27.46960 -25.30881 -24.37855 -23.80340 -23.17846 -21.88188 -20.76055 -19.26144 -18.77545 -18.55834 -17.79157 -17.52660 -16.57670 -15.81361 -15.67020 -15.34050 -15.08228 -14.56702 -14.38562 -14.21964 -14.03032 -13.84905 -13.72977 -13.62622 -13.33735 -12.92604 -12.63021 -12.17843 -11.75421 -11.49342 -11.07285 -10.96201 -10.63183 -10.50271 -10.40114 -10.30092 -10.15693 -9.79825 -9.66133 -9.43029 -9.00604 -8.90592 -7.39664 -5.87615 -3.24491 0.15995 1.19270 2.20731 2.38139 2.63083 3.02107 3.26334 3.30145 3.36533 4.15626 4.30233 4.47931 4.60195 4.67056 4.68325 4.75920 4.76554 4.92856 4.96624 5.27916 5.28906 5.33904 5.41078 5.46962 5.57082 5.68569 5.73435 5.91851 6.00389 6.12211 6.35622 6.50470 6.58787 6.77666 6.87505 7.23686 7.52095 7.59136 7.89703 8.31845 9.09245 9.81285 10.00001 11.30403 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.003107 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.008703 B = 9011.177116 C =10064.435336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.452 5.452 3 O -0.002 6.002 4 C 0.032 3.968 5 C 0.600 3.400 6 O -0.499 6.499 7 N -0.704 5.704 8 C 0.128 3.872 9 C -0.126 4.126 10 C -0.168 4.168 11 C 0.173 3.827 12 N -0.730 5.730 13 C -0.249 4.249 14 H 0.092 0.908 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.885 3.115 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.278 1.278 21 C -0.147 4.147 22 C -0.237 4.237 23 C 0.480 3.520 24 O -0.522 6.522 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.410 0.590 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.362 0.638 36 H 0.261 0.739 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.500 -20.343 3.219 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.216 5.216 3 O -0.014 6.014 4 C -0.026 4.026 5 C 0.381 3.619 6 O -0.374 6.374 7 N -0.354 5.354 8 C 0.005 3.995 9 C -0.145 4.145 10 C -0.209 4.209 11 C 0.061 3.939 12 N -0.370 5.370 13 C -0.378 4.378 14 H 0.110 0.890 15 C -0.190 4.190 16 N -0.578 5.578 17 Si 0.715 3.285 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.187 4.187 22 C -0.262 4.262 23 C 0.278 3.722 24 O -0.403 6.403 25 H 0.119 0.881 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.245 0.755 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.195 0.805 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.757 -20.776 3.049 21.012 hybrid contribution -1.097 -0.090 1.250 1.665 sum -0.340 -20.866 4.299 21.307 Atomic orbital electron populations 1.22172 0.70415 1.05466 1.04827 1.46118 1.05971 0.99804 1.69665 1.84017 1.15223 1.21122 1.81005 1.23463 0.81667 0.96402 1.01064 1.16704 0.85414 0.81550 0.78227 1.90897 1.18247 1.78604 1.49687 1.46049 1.12051 1.04811 1.72531 1.21693 0.88198 0.86825 1.02747 1.22794 1.00015 0.91446 1.00195 1.23916 1.02154 1.00543 0.94305 1.21033 0.89993 0.88943 0.93936 1.42520 1.47338 1.28454 1.18676 1.19105 1.18416 0.99238 1.01078 0.88998 1.24689 0.99233 0.97053 0.98012 1.69694 1.33983 1.16116 1.38007 0.86562 0.78672 0.77552 0.85732 1.20970 1.21651 1.20456 1.23466 0.97337 0.96414 1.01487 1.23339 0.99733 0.93338 1.09838 1.18338 0.86684 0.85544 0.81648 1.90974 1.79047 1.15843 1.54411 0.88081 0.89062 0.89111 0.75473 0.90850 0.90482 0.88999 0.90791 0.91220 0.90923 0.80527 0.92917 0.91260 0.89812 0.78939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.56 11.18 59.85 0.67 1.23 16 2 N -0.45 -4.12 3.68 -69.76 -0.26 -4.38 16 3 O 0.00 -0.02 10.69 16.82 0.18 0.16 16 4 C 0.03 0.32 7.25 -36.18 -0.26 0.05 16 5 C 0.60 6.37 7.84 -12.17 -0.10 6.27 16 6 O -0.50 -6.69 16.89 5.37 0.09 -6.60 16 7 N -0.70 -6.60 5.55 -61.15 -0.34 -6.94 16 8 C 0.13 1.29 5.50 -4.05 -0.02 1.26 16 9 C -0.13 -1.48 3.62 -89.81 -0.33 -1.81 16 10 C -0.17 -2.34 7.44 -25.83 -0.19 -2.54 16 11 C 0.17 2.94 4.57 -67.03 -0.31 2.63 16 12 N -0.73 -15.87 5.11 -52.55 -0.27 -16.13 16 13 C -0.25 -6.65 10.45 -15.06 -0.16 -6.80 16 14 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 15 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 16 N -0.93 -28.25 13.97 55.49 0.78 -27.47 16 17 Si 0.88 20.96 27.74 -169.99 -4.71 16.24 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.08 6.52 56.52 0.37 -5.71 16 21 C -0.15 -1.92 7.39 -25.92 -0.19 -2.11 16 22 C -0.24 -2.47 10.94 -38.70 -0.42 -2.90 16 23 C 0.48 5.65 8.02 -14.66 -0.12 5.53 16 24 O -0.52 -7.80 17.92 4.94 0.09 -7.71 16 25 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.41 3.27 8.28 -40.82 -0.34 2.94 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.29 8.10 -51.93 -0.42 0.86 16 35 H 0.36 7.68 5.76 -40.82 -0.24 7.45 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 39 H 0.19 1.77 8.06 -52.48 -0.42 1.34 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -33.94 339.45 -6.06 -40.00 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.21 Total: 6.82 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.52 Total: 0.90 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.09 Total: -54.93 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.36 Total: -14.14 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.71 Total: 16.24 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.94 -6.06 -40.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091002077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.776 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds