Wall clock time and date at job start Tue Mar 31 2020 04:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 N 1.46502 * 109.47591 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00587 * 180.02562 * 12 11 10 14 14 O 1.21593 * 119.99783 * 359.97438 * 13 12 11 15 15 C 1.47523 * 120.00511 * 179.97438 * 13 12 11 16 16 C 1.36594 * 125.77366 * 179.71130 * 15 13 12 17 17 N 1.34810 * 106.83739 * 179.89723 * 16 15 13 18 18 C 1.46506 * 126.59413 * 180.13489 * 17 16 15 19 19 H 1.09006 * 110.45397 * 207.90211 * 18 17 16 20 20 C 1.54503 * 110.51183 * 85.29205 * 18 17 16 21 21 C 1.54479 * 104.06191 * 241.35615 * 20 18 17 22 22 O 1.44415 * 104.80422 * 23.97967 * 21 20 18 23 23 C 1.44419 * 105.27674 * 319.48718 * 22 21 20 24 24 N 1.40210 * 106.81247 * 0.35966 * 17 16 15 25 25 N 1.28757 * 108.37026 * 359.77081 * 24 17 16 26 26 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 29 29 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 30 30 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 31 31 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 32 32 H 0.97000 * 119.99258 * 359.97438 * 12 11 10 33 33 H 1.08000 * 126.58086 * 0.04269 * 16 15 13 34 34 H 1.09002 * 110.51097 * 0.02562 * 20 18 17 35 35 H 1.09003 * 110.51049 * 122.57540 * 20 18 17 36 36 H 1.09002 * 110.36969 * 142.81359 * 21 20 18 37 37 H 1.09000 * 110.36957 * 265.03311 * 21 20 18 38 38 H 1.08996 * 110.37585 * 281.67942 * 23 22 21 39 39 H 1.09006 * 110.37244 * 159.33859 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 7 1.7960 -6.0885 0.0188 13 6 1.1222 -7.2556 0.0238 14 8 -0.0937 -7.2555 0.0237 15 6 1.8597 -8.5332 0.0293 16 6 1.2991 -9.7788 0.0403 17 7 2.3154 -10.6645 0.0396 18 6 2.2011 -12.1250 0.0464 19 1 3.0733 -12.5732 0.5225 20 6 2.0341 -12.6617 -1.3927 21 6 0.6565 -13.3606 -1.3752 22 8 -0.0641 -12.7287 -0.2950 23 6 0.9046 -12.5631 0.7632 24 7 3.5029 -9.9190 0.0365 25 7 3.1969 -8.6684 0.0304 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 2.6849 -3.7190 -0.8822 29 1 2.6842 -3.7101 0.8977 30 1 0.4367 -4.7574 0.9022 31 1 0.4373 -4.7664 -0.8777 32 1 2.7660 -6.0885 0.0185 33 1 0.2441 -10.0097 0.0457 34 1 2.0371 -11.8404 -2.1094 35 1 2.8237 -13.3753 -1.6283 36 1 0.1385 -13.2019 -2.3211 37 1 0.7745 -14.4269 -1.1824 38 1 1.0604 -13.5067 1.2861 39 1 0.5771 -11.7916 1.4602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147016552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:00 Heat of formation + Delta-G solvation = 34.898263 kcal Electronic energy + Delta-G solvation = -22622.097324 eV Core-core repulsion = 18988.751022 eV Total energy + Delta-G solvation = -3633.346302 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.57459 -40.10499 -39.15252 -35.64991 -35.00216 -33.77445 -31.84161 -31.42934 -30.77469 -29.53395 -27.72073 -24.81487 -23.95639 -23.28730 -22.89632 -21.42469 -21.29291 -20.46142 -18.50802 -17.32784 -17.11886 -16.72894 -16.33988 -16.18056 -15.75149 -15.36036 -15.06793 -14.86048 -14.49268 -13.90076 -13.70273 -13.57429 -13.22534 -13.12219 -12.82968 -12.72374 -12.46076 -12.17899 -11.96638 -11.49989 -11.40187 -11.06086 -10.90569 -10.79145 -10.76996 -10.44252 -10.13965 -10.00008 -9.71397 -9.53412 -8.94155 -8.76915 -6.94500 -5.75551 -3.05820 0.85270 1.57520 1.57676 3.01271 3.24221 3.31868 3.45534 3.51022 3.53448 3.58739 3.71931 3.97287 4.08321 4.23134 4.35487 4.47320 4.62455 4.70778 4.76954 4.81184 4.92167 5.00876 5.10178 5.17373 5.50218 5.54914 5.64447 5.82800 5.88272 6.01891 6.05546 6.20007 6.52826 6.77203 6.79518 7.52961 7.71368 7.79524 8.28700 8.42352 9.53623 10.08598 10.43602 11.47200 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.045857 B = 0.002246 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.445975 B =12463.008141 C =12840.809507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.730 5.730 10 C 0.144 3.856 11 C 0.111 3.889 12 N -0.706 5.706 13 C 0.600 3.400 14 O -0.539 6.539 15 C -0.096 4.096 16 C 0.099 3.901 17 N -0.359 5.359 18 C 0.116 3.884 19 H 0.131 0.869 20 C -0.167 4.167 21 C 0.044 3.956 22 O -0.364 6.364 23 C 0.034 3.966 24 N -0.066 5.066 25 N -0.201 5.201 26 H 0.255 0.745 27 H 0.386 0.614 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.408 0.592 33 H 0.206 0.794 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 -32.862 -0.606 33.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.375 5.375 10 C 0.015 3.985 11 C -0.012 4.012 12 N -0.356 5.356 13 C 0.383 3.617 14 O -0.415 6.415 15 C -0.235 4.235 16 C -0.057 4.057 17 N -0.145 5.145 18 C 0.014 3.986 19 H 0.148 0.852 20 C -0.205 4.205 21 C -0.033 4.033 22 O -0.282 6.282 23 C -0.044 4.044 24 N -0.045 5.045 25 N -0.075 5.075 26 H 0.065 0.935 27 H 0.220 0.780 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.243 0.757 33 H 0.222 0.778 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.528 -32.735 -0.608 33.052 hybrid contribution -0.142 0.738 -0.033 0.753 sum 4.386 -31.997 -0.641 32.303 Atomic orbital electron populations 1.69683 1.05126 1.25663 1.57484 1.24782 0.95583 0.97812 1.02830 0.86072 0.78752 0.83897 0.77183 1.20502 1.21815 1.21822 1.19255 0.91105 0.83835 1.43001 0.90936 1.42196 1.06009 0.99571 1.89698 1.20766 0.93486 0.85542 0.98665 1.21643 0.95465 0.81306 1.02800 1.45721 1.11058 1.05423 1.73407 1.16709 0.86211 0.81841 0.76926 1.90827 1.12541 1.87057 1.51088 1.21565 0.89874 0.95137 1.16907 1.23377 0.96718 0.88515 0.97121 1.50537 1.06037 1.07596 1.50313 1.23041 1.02300 0.74632 0.98645 0.85161 1.23476 0.99533 1.02291 0.95229 1.23538 0.90859 0.96871 0.92065 1.89259 1.32691 1.80994 1.25262 1.23900 0.86230 1.02933 0.91383 1.82001 1.03729 0.96023 1.22777 1.74651 1.12820 1.10278 1.09713 0.93462 0.78003 0.95595 0.95598 0.90959 0.90972 0.75737 0.77759 0.89212 0.88122 0.87995 0.91100 0.88956 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.73 -18.93 5.60 -59.91 -0.34 -19.27 16 10 C 0.14 2.93 6.37 -4.04 -0.03 2.90 16 11 C 0.11 1.99 5.79 -4.04 -0.02 1.97 16 12 N -0.71 -10.94 5.55 -61.35 -0.34 -11.28 16 13 C 0.60 9.45 7.82 -12.48 -0.10 9.35 16 14 O -0.54 -9.91 16.86 5.28 0.09 -9.82 16 15 C -0.10 -1.27 6.99 -83.55 -0.58 -1.85 16 16 C 0.10 1.02 10.04 -16.84 -0.17 0.85 16 17 N -0.36 -3.15 3.53 -53.04 -0.19 -3.33 16 18 C 0.12 0.54 4.28 -66.36 -0.28 0.26 16 19 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 20 C -0.17 -0.61 6.88 -25.17 -0.17 -0.78 16 21 C 0.04 0.15 7.63 37.93 0.29 0.44 16 22 O -0.36 -2.24 11.65 -35.23 -0.41 -2.65 16 23 C 0.03 0.13 6.64 37.93 0.25 0.39 16 24 N -0.07 -0.78 13.78 60.35 0.83 0.06 16 25 N -0.20 -2.70 12.04 32.85 0.40 -2.30 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.39 10.53 7.67 -40.82 -0.31 10.21 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.41 5.67 8.16 -40.82 -0.33 5.34 16 33 H 0.21 1.78 7.77 -52.49 -0.41 1.37 16 34 H 0.09 0.50 7.97 -51.93 -0.41 0.09 16 35 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.11 0.48 7.30 -51.93 -0.38 0.10 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -35.38 339.17 -5.40 -40.79 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.20 Total: 6.93 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -1.06 Total: 6.02 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: 1.09 Total: -64.02 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.32 Total: -12.46 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.38 -5.40 -40.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147016552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.686 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds