Wall clock time and date at job start Tue Mar 31 2020 04:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 N 1.46502 * 109.47591 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00587 * 180.02562 * 12 11 10 14 14 O 1.21593 * 119.99783 * 359.97438 * 13 12 11 15 15 C 1.47523 * 120.00511 * 179.97438 * 13 12 11 16 16 C 1.36594 * 125.77366 * 179.71130 * 15 13 12 17 17 N 1.34810 * 106.83739 * 179.89723 * 16 15 13 18 18 C 1.46506 * 126.59413 * 180.13489 * 17 16 15 19 19 H 1.09006 * 110.45397 * 207.90211 * 18 17 16 20 20 C 1.54503 * 110.51183 * 85.29205 * 18 17 16 21 21 C 1.54479 * 104.06191 * 241.35615 * 20 18 17 22 22 O 1.44415 * 104.80422 * 23.97967 * 21 20 18 23 23 C 1.44419 * 105.27674 * 319.48718 * 22 21 20 24 24 N 1.40210 * 106.81247 * 0.35966 * 17 16 15 25 25 N 1.28757 * 108.37026 * 359.77081 * 24 17 16 26 26 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 29 29 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 30 30 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 31 31 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 32 32 H 0.97000 * 119.99258 * 359.97438 * 12 11 10 33 33 H 1.08000 * 126.58086 * 0.04269 * 16 15 13 34 34 H 1.09002 * 110.51097 * 0.02562 * 20 18 17 35 35 H 1.09003 * 110.51049 * 122.57540 * 20 18 17 36 36 H 1.09002 * 110.36969 * 142.81359 * 21 20 18 37 37 H 1.09000 * 110.36957 * 265.03311 * 21 20 18 38 38 H 1.08996 * 110.37585 * 281.67942 * 23 22 21 39 39 H 1.09006 * 110.37244 * 159.33859 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 7 1.7960 -6.0885 0.0188 13 6 1.1222 -7.2556 0.0238 14 8 -0.0937 -7.2555 0.0237 15 6 1.8597 -8.5332 0.0293 16 6 1.2991 -9.7788 0.0403 17 7 2.3154 -10.6645 0.0396 18 6 2.2011 -12.1250 0.0464 19 1 3.0733 -12.5732 0.5225 20 6 2.0341 -12.6617 -1.3927 21 6 0.6565 -13.3606 -1.3752 22 8 -0.0641 -12.7287 -0.2950 23 6 0.9046 -12.5631 0.7632 24 7 3.5029 -9.9190 0.0365 25 7 3.1969 -8.6684 0.0304 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 2.6849 -3.7190 -0.8822 29 1 2.6842 -3.7101 0.8977 30 1 0.4367 -4.7574 0.9022 31 1 0.4373 -4.7664 -0.8777 32 1 2.7660 -6.0885 0.0185 33 1 0.2441 -10.0097 0.0457 34 1 2.0371 -11.8404 -2.1094 35 1 2.8237 -13.3753 -1.6283 36 1 0.1385 -13.2019 -2.3211 37 1 0.7745 -14.4269 -1.1824 38 1 1.0604 -13.5067 1.2861 39 1 0.5771 -11.7916 1.4602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147016552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:00 Heat of formation + Delta-G solvation = 5.979667 kcal Electronic energy + Delta-G solvation = -22623.351329 eV Core-core repulsion = 18988.751022 eV Total energy + Delta-G solvation = -3634.600307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.42714 -40.69862 -40.24603 -37.33551 -35.74411 -35.40861 -33.20555 -32.44491 -31.83648 -29.98452 -29.35025 -26.08021 -25.04975 -24.38019 -23.59070 -23.01158 -21.99693 -21.49947 -19.52865 -19.15771 -17.76367 -17.33000 -17.17780 -17.07452 -16.73574 -16.51175 -16.41864 -15.89130 -15.65734 -15.36830 -15.05963 -15.04665 -14.60576 -13.95458 -13.77591 -13.46676 -13.11123 -13.04523 -12.95736 -12.69413 -12.62790 -12.51968 -12.28609 -12.21072 -12.04144 -11.86392 -11.52836 -11.36318 -11.00255 -10.83927 -10.51954 -10.13121 -9.05995 -7.96279 -5.27585 0.01846 0.52142 0.90259 1.49106 1.50550 1.60832 1.97754 2.14377 2.57741 2.73843 3.06086 3.23294 3.33500 3.37809 3.59701 3.76094 3.84878 3.91415 3.99437 4.11595 4.16109 4.22500 4.29706 4.40334 4.54473 4.57999 4.64719 4.75980 4.81267 4.88672 5.00904 5.12822 5.30343 5.33047 5.49757 5.66333 6.24827 6.34056 6.80724 7.04789 7.31152 8.02118 8.26244 9.27542 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.045857 B = 0.002246 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.445975 B =12463.008141 C =12840.809507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.247 4.247 8 H 0.082 0.918 9 N -0.745 5.745 10 C 0.148 3.852 11 C 0.129 3.871 12 N -0.700 5.700 13 C 0.602 3.398 14 O -0.570 6.570 15 C -0.118 4.118 16 C 0.114 3.886 17 N -0.341 5.341 18 C 0.105 3.895 19 H 0.156 0.844 20 C -0.161 4.161 21 C 0.042 3.958 22 O -0.392 6.392 23 C 0.035 3.965 24 N -0.075 5.075 25 N -0.219 5.219 26 H 0.253 0.747 27 H 0.375 0.625 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.416 0.584 33 H 0.220 0.780 34 H 0.068 0.932 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.430 -34.969 -0.480 35.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.270 4.270 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.379 4.379 8 H 0.100 0.900 9 N -0.389 5.389 10 C 0.021 3.979 11 C 0.004 3.996 12 N -0.351 5.351 13 C 0.388 3.612 14 O -0.449 6.449 15 C -0.257 4.257 16 C -0.044 4.044 17 N -0.126 5.126 18 C 0.005 3.995 19 H 0.173 0.827 20 C -0.199 4.199 21 C -0.034 4.034 22 O -0.311 6.311 23 C -0.043 4.043 24 N -0.055 5.055 25 N -0.093 5.093 26 H 0.061 0.939 27 H 0.207 0.793 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.253 0.747 33 H 0.236 0.764 34 H 0.087 0.913 35 H 0.144 0.856 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.141 0.859 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.065 -34.908 -0.483 35.434 hybrid contribution -0.585 1.189 -0.084 1.327 sum 5.480 -33.719 -0.567 34.166 Atomic orbital electron populations 1.69843 1.06753 1.26227 1.59188 1.25676 0.96497 1.01431 1.03377 0.84983 0.78248 0.79281 0.76661 1.18765 1.21956 1.21961 1.19683 0.91710 0.84862 1.41611 0.90050 1.42402 1.05796 1.00937 1.89747 1.20832 0.93636 0.84208 0.99230 1.21253 0.94712 0.81715 1.01888 1.45565 1.11375 1.04654 1.73469 1.16980 0.85931 0.82492 0.75844 1.90804 1.13909 1.87591 1.52552 1.21269 0.90159 0.94785 1.19479 1.23525 0.97503 0.87848 0.95505 1.50837 1.04710 1.08969 1.48134 1.23594 1.03947 0.72026 0.99927 0.82658 1.23478 1.00633 1.02058 0.93765 1.23687 0.90293 0.97972 0.91492 1.89233 1.33978 1.81533 1.26368 1.24043 0.85185 1.04201 0.90856 1.81905 1.04914 0.95744 1.22943 1.74624 1.12872 1.11257 1.10573 0.93865 0.79267 0.94626 0.94612 0.91915 0.91971 0.74680 0.76353 0.91347 0.85593 0.88206 0.88725 0.85887 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.51 13.06 21.65 0.28 -60.22 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 7 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.75 -38.95 5.60 -343.46 -1.92 -40.87 16 10 C 0.15 5.98 6.37 86.38 0.55 6.53 16 11 C 0.13 4.66 5.79 86.38 0.50 5.16 16 12 N -0.70 -21.67 5.55 -466.29 -2.59 -24.25 16 13 C 0.60 19.08 7.82 86.69 0.68 19.76 16 14 O -0.57 -21.26 16.86 -4.01 -0.07 -21.33 16 15 C -0.12 -3.07 6.99 40.81 0.29 -2.78 16 16 C 0.11 2.24 10.04 83.85 0.84 3.08 16 17 N -0.34 -5.42 3.53 -321.72 -1.14 -6.56 16 18 C 0.11 0.70 4.28 46.00 0.20 0.90 16 19 H 0.16 0.32 8.14 -2.38 -0.02 0.30 16 20 C -0.16 -0.78 6.88 31.61 0.22 -0.57 16 21 C 0.04 0.20 7.63 72.48 0.55 0.75 16 22 O -0.39 -4.07 11.65 -148.98 -1.74 -5.80 16 23 C 0.03 0.19 6.64 72.49 0.48 0.67 16 24 N -0.08 -1.68 13.78 37.02 0.51 -1.17 16 25 N -0.22 -5.77 12.04 -49.99 -0.60 -6.37 16 26 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.38 20.95 7.67 -92.71 -0.71 20.24 16 28 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 30 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.42 11.42 8.16 -92.71 -0.76 10.67 16 33 H 0.22 3.61 7.77 -2.91 -0.02 3.58 16 34 H 0.07 0.67 7.97 -2.39 -0.02 0.65 16 35 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.10 0.70 7.30 -2.38 -0.02 0.68 16 Total: -1.00 -76.25 339.17 0.00 -76.25 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -0.37 Total: 25.43 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 5.61 Total: 16.28 kcal Atomic # 7 Polarization: -133.99 SS G_CDS: -5.46 Total: -139.45 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -1.80 Total: -27.13 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -76.25 0.00 -76.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147016552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.227 kcal (2) G-P(sol) polarization free energy of solvation -76.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds