Wall clock time and date at job start Tue Mar 31 2020 04:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35401 * 117.00213 * 2 1 4 4 C 1.36286 * 126.47240 * 180.02562 * 3 2 1 5 5 N 1.33132 * 107.79112 * 180.22171 * 4 3 2 6 6 C 1.31439 * 108.83437 * 359.59795 * 5 4 3 7 7 C 1.46935 * 125.64254 * 180.17927 * 6 5 4 8 8 O 1.21673 * 119.99604 * 172.78585 * 7 6 5 9 9 N 1.34768 * 120.00226 * 352.78511 * 7 6 5 10 10 C 1.47085 * 120.88128 * 183.35912 * 9 7 6 11 11 C 1.53703 * 108.27480 * 128.75347 * 10 9 7 12 12 N 1.46902 * 109.25759 * 54.08439 * 11 10 9 13 13 C 1.46893 * 110.99861 * 172.60759 * 12 11 10 14 14 C 1.50701 * 109.47187 * 294.29994 * 13 12 11 15 15 H 1.08005 * 119.99914 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00336 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99723 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00313 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47066 * 90.00150 * 18 16 14 20 20 H 1.48497 * 109.47251 * 210.00515 * 18 16 14 21 21 H 1.48498 * 109.46931 * 329.99835 * 18 16 14 22 22 C 1.46893 * 111.26644 * 296.75492 * 12 11 10 23 23 C 1.47079 * 120.88239 * 3.63768 * 9 7 6 24 24 O 1.34396 * 126.46531 * 359.97401 * 3 2 1 25 25 H 1.08996 * 109.46793 * 59.99777 * 1 2 3 26 26 H 1.09006 * 109.46678 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46797 * 300.00097 * 1 2 3 28 28 H 1.08004 * 126.09758 * 359.95066 * 4 3 2 29 29 H 1.08994 * 109.63009 * 248.51713 * 10 9 7 30 30 H 1.09000 * 109.62615 * 9.10665 * 10 9 7 31 31 H 1.09001 * 109.64567 * 294.07594 * 11 10 9 32 32 H 1.09000 * 109.41536 * 173.95048 * 11 10 9 33 33 H 1.08996 * 109.47352 * 54.30205 * 13 12 11 34 34 H 1.09002 * 109.47246 * 174.30450 * 13 12 11 35 35 H 0.96999 * 119.99694 * 179.97438 * 17 16 14 36 36 H 1.08994 * 109.49686 * 303.14380 * 22 12 11 37 37 H 1.09004 * 109.51406 * 183.07335 * 22 12 11 38 38 H 1.09000 * 109.62761 * 350.89457 * 23 9 7 39 39 H 1.08996 * 109.63015 * 111.48015 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2064 0.0000 4 6 3.3881 1.4307 -0.0005 5 7 3.5807 2.7480 0.0046 6 6 2.4112 3.3479 -0.0005 7 6 2.1944 4.8011 -0.0012 8 8 1.0713 5.2485 -0.1384 9 7 3.2395 5.6385 0.1503 10 6 3.0364 7.0933 0.2261 11 6 3.7658 7.6174 1.4733 12 7 5.1701 7.1883 1.4295 13 6 5.9452 7.8123 2.5101 14 6 6.0104 9.3012 2.2865 15 1 5.5250 9.7400 1.4272 16 6 6.6897 10.1032 3.1788 17 7 7.2812 9.5688 4.2248 18 14 6.7700 11.9489 2.9020 19 1 5.6182 12.6009 3.5753 20 1 8.0376 12.4792 3.4651 21 1 6.7181 12.2337 1.4455 22 6 5.2817 5.7245 1.4790 23 6 4.6139 5.1222 0.2381 24 8 1.4434 2.4088 -0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.1593 0.6746 -0.0002 29 1 3.4447 7.5669 -0.6666 30 1 1.9712 7.3106 0.3049 31 1 3.2914 7.2186 2.3700 32 1 3.7185 8.7063 1.4899 33 1 5.4636 7.6093 3.4666 34 1 6.9547 7.4014 2.5171 35 1 7.7595 10.1331 4.8524 36 1 4.7863 5.3520 2.3755 37 1 6.3338 5.4400 1.4999 38 1 4.5921 4.0359 0.3249 39 1 5.1708 5.4101 -0.6535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195795179.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:32 Heat of formation + Delta-G solvation = -9.124247 kcal Electronic energy + Delta-G solvation = -23774.754275 eV Core-core repulsion = 20107.206262 eV Total energy + Delta-G solvation = -3667.548013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.86428 -39.97976 -39.09802 -37.53298 -35.64320 -34.30905 -32.41144 -31.19874 -30.10107 -28.51681 -27.58464 -25.66249 -24.06215 -23.48783 -22.73880 -21.94810 -20.93070 -19.55799 -18.84754 -17.80933 -17.39649 -16.82169 -16.28794 -15.88395 -15.80828 -15.23880 -14.86785 -14.73680 -14.39104 -13.83226 -13.81124 -13.64624 -13.56167 -12.93732 -12.77643 -12.54437 -12.11458 -12.05834 -11.91084 -11.41147 -11.22846 -10.86085 -10.76107 -10.72657 -10.55936 -10.45234 -10.05865 -9.67035 -9.21612 -8.82029 -8.52143 -8.43616 -7.29934 -6.04547 -4.06352 0.61046 1.44471 1.94384 2.45560 3.00399 3.23686 3.31367 3.37846 3.41874 3.77643 4.41065 4.44609 4.50297 4.59191 4.75113 4.88439 4.97062 5.24573 5.31447 5.37564 5.46489 5.59666 5.66583 5.74507 5.84640 5.93418 6.22367 6.30924 6.40063 6.44904 6.54541 6.68554 7.07934 7.25015 7.30693 7.37078 7.76591 7.93942 8.03740 8.14287 8.50111 9.01008 9.58206 11.06276 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.038178 B = 0.003052 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.234968 B = 9172.482994 C = 9588.535234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.251 6.251 3 C 0.169 3.831 4 C -0.056 4.056 5 N -0.401 5.401 6 C 0.142 3.858 7 C 0.610 3.390 8 O -0.531 6.531 9 N -0.572 5.572 10 C 0.117 3.883 11 C 0.051 3.949 12 N -0.537 5.537 13 C 0.193 3.807 14 C -0.509 4.509 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.043 3.957 23 C 0.064 3.936 24 O -0.192 6.192 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.066 0.934 28 H 0.203 0.797 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.026 0.974 32 H 0.100 0.900 33 H -0.009 1.009 34 H 0.032 0.968 35 H 0.261 0.739 36 H 0.025 0.975 37 H 0.083 0.917 38 H 0.147 0.853 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.766 -18.683 -8.703 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.164 6.164 3 C 0.069 3.931 4 C -0.199 4.199 5 N -0.133 5.133 6 C -0.062 4.062 7 C 0.393 3.607 8 O -0.407 6.407 9 N -0.304 5.304 10 C -0.004 4.004 11 C -0.078 4.078 12 N -0.263 5.263 13 C 0.069 3.931 14 C -0.548 4.548 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.086 4.086 23 C -0.058 4.058 24 O -0.080 6.080 25 H 0.085 0.915 26 H 0.133 0.867 27 H 0.085 0.915 28 H 0.219 0.781 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.044 0.956 32 H 0.118 0.882 33 H 0.009 0.991 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.101 0.899 38 H 0.163 0.837 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.501 -18.045 -9.050 22.755 hybrid contribution -1.027 0.244 0.834 1.345 sum -11.527 -17.801 -8.216 22.743 Atomic orbital electron populations 1.23264 0.76071 1.05270 1.03087 1.86428 1.23569 1.17408 1.89027 1.22037 0.90830 0.78561 1.01636 1.22736 0.91751 0.93236 1.12187 1.70050 1.23791 1.05475 1.14029 1.24953 0.79882 0.91928 1.09443 1.15901 0.85236 0.80556 0.78967 1.90872 1.22666 1.76094 1.51065 1.47908 1.06893 1.07123 1.68499 1.22169 1.01558 0.76547 1.00120 1.22437 0.89057 1.02065 0.94238 1.62116 1.09327 1.04658 1.50152 1.19723 0.92577 0.94553 0.86291 1.21152 1.33312 0.91328 1.08980 0.91771 1.24995 0.95494 0.98996 0.95114 1.69960 1.35032 1.35574 1.13200 0.86496 0.77360 0.85091 0.78473 1.20747 1.21279 1.19722 1.22392 1.00556 0.90197 0.95481 1.23285 0.79442 1.03780 0.99284 1.84436 1.38505 1.14880 1.70159 0.91529 0.86738 0.91525 0.78058 0.89984 0.89075 0.95582 0.88155 0.99132 0.94964 0.92896 0.95730 0.89898 0.83699 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.78 101.05 1.09 1.19 16 2 O -0.25 -2.14 10.55 -40.99 -0.43 -2.57 16 3 C 0.17 1.80 7.95 30.03 0.24 2.04 16 4 C -0.06 -0.57 11.92 -17.69 -0.21 -0.78 16 5 N -0.40 -5.11 7.51 -11.67 -0.09 -5.20 16 6 C 0.14 2.03 7.86 -14.20 -0.11 1.92 16 7 C 0.61 9.93 7.69 -12.74 -0.10 9.83 16 8 O -0.53 -9.82 16.57 -0.33 -0.01 -9.83 16 9 N -0.57 -9.12 3.00 -173.62 -0.52 -9.65 16 10 C 0.12 1.90 6.62 -3.36 -0.02 1.87 16 11 C 0.05 0.97 5.47 -3.46 -0.02 0.96 16 12 N -0.54 -11.26 4.62 -235.46 -1.09 -12.35 16 13 C 0.19 4.93 4.72 -4.98 -0.02 4.91 16 14 C -0.51 -13.95 8.41 -34.44 -0.29 -14.24 16 15 H 0.06 1.72 7.13 -52.48 -0.37 1.35 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 18 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 23 C 0.06 0.97 6.43 -3.60 -0.02 0.94 16 24 O -0.19 -2.53 10.34 -22.92 -0.24 -2.76 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.20 1.37 8.06 -52.48 -0.42 0.95 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.09 1.42 7.08 -51.93 -0.37 1.05 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.10 2.01 6.67 -51.93 -0.35 1.66 16 33 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 34 H 0.03 0.88 7.97 -51.93 -0.41 0.46 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 38 H 0.15 2.03 3.80 -78.11 -0.30 1.73 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 327.79 15.07 4.94 4.94 Total: -1.00 -32.15 327.79 -6.46 -38.61 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -5.15 Total: -2.66 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 0.41 Total: 10.83 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.96 Total: -52.88 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.67 Total: -15.16 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.15 -6.46 -38.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195795179.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.486 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds