Wall clock time and date at job start Tue Mar 31 2020 04:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35401 * 117.00213 * 2 1 4 4 C 1.36286 * 126.47240 * 180.02562 * 3 2 1 5 5 N 1.33132 * 107.79112 * 180.22171 * 4 3 2 6 6 C 1.31439 * 108.83437 * 359.59795 * 5 4 3 7 7 C 1.46935 * 125.64254 * 180.17927 * 6 5 4 8 8 O 1.21673 * 119.99604 * 172.78585 * 7 6 5 9 9 N 1.34768 * 120.00226 * 352.78511 * 7 6 5 10 10 C 1.47085 * 120.88128 * 183.35912 * 9 7 6 11 11 C 1.53703 * 108.27480 * 128.75347 * 10 9 7 12 12 N 1.46902 * 109.25759 * 54.08439 * 11 10 9 13 13 C 1.46893 * 110.99861 * 172.60759 * 12 11 10 14 14 C 1.50701 * 109.47187 * 294.29994 * 13 12 11 15 15 H 1.08005 * 119.99914 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00336 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99723 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00313 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47066 * 90.00150 * 18 16 14 20 20 H 1.48497 * 109.47251 * 210.00515 * 18 16 14 21 21 H 1.48498 * 109.46931 * 329.99835 * 18 16 14 22 22 C 1.46893 * 111.26644 * 296.75492 * 12 11 10 23 23 C 1.47079 * 120.88239 * 3.63768 * 9 7 6 24 24 O 1.34396 * 126.46531 * 359.97401 * 3 2 1 25 25 H 1.08996 * 109.46793 * 59.99777 * 1 2 3 26 26 H 1.09006 * 109.46678 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46797 * 300.00097 * 1 2 3 28 28 H 1.08004 * 126.09758 * 359.95066 * 4 3 2 29 29 H 1.08994 * 109.63009 * 248.51713 * 10 9 7 30 30 H 1.09000 * 109.62615 * 9.10665 * 10 9 7 31 31 H 1.09001 * 109.64567 * 294.07594 * 11 10 9 32 32 H 1.09000 * 109.41536 * 173.95048 * 11 10 9 33 33 H 1.08996 * 109.47352 * 54.30205 * 13 12 11 34 34 H 1.09002 * 109.47246 * 174.30450 * 13 12 11 35 35 H 0.96999 * 119.99694 * 179.97438 * 17 16 14 36 36 H 1.08994 * 109.49686 * 303.14380 * 22 12 11 37 37 H 1.09004 * 109.51406 * 183.07335 * 22 12 11 38 38 H 1.09000 * 109.62761 * 350.89457 * 23 9 7 39 39 H 1.08996 * 109.63015 * 111.48015 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2064 0.0000 4 6 3.3881 1.4307 -0.0005 5 7 3.5807 2.7480 0.0046 6 6 2.4112 3.3479 -0.0005 7 6 2.1944 4.8011 -0.0012 8 8 1.0713 5.2485 -0.1384 9 7 3.2395 5.6385 0.1503 10 6 3.0364 7.0933 0.2261 11 6 3.7658 7.6174 1.4733 12 7 5.1701 7.1883 1.4295 13 6 5.9452 7.8123 2.5101 14 6 6.0104 9.3012 2.2865 15 1 5.5250 9.7400 1.4272 16 6 6.6897 10.1032 3.1788 17 7 7.2812 9.5688 4.2248 18 14 6.7700 11.9489 2.9020 19 1 5.6182 12.6009 3.5753 20 1 8.0376 12.4792 3.4651 21 1 6.7181 12.2337 1.4455 22 6 5.2817 5.7245 1.4790 23 6 4.6139 5.1222 0.2381 24 8 1.4434 2.4088 -0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.1593 0.6746 -0.0002 29 1 3.4447 7.5669 -0.6666 30 1 1.9712 7.3106 0.3049 31 1 3.2914 7.2186 2.3700 32 1 3.7185 8.7063 1.4899 33 1 5.4636 7.6093 3.4666 34 1 6.9547 7.4014 2.5171 35 1 7.7595 10.1331 4.8524 36 1 4.7863 5.3520 2.3755 37 1 6.3338 5.4400 1.4999 38 1 4.5921 4.0359 0.3249 39 1 5.1708 5.4101 -0.6535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195795179.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:31 Heat of formation + Delta-G solvation = -32.967213 kcal Electronic energy + Delta-G solvation = -23775.788183 eV Core-core repulsion = 20107.206262 eV Total energy + Delta-G solvation = -3668.581921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.79837 -41.25383 -39.83559 -39.01769 -36.74768 -35.79104 -34.39141 -32.46003 -31.20144 -30.03181 -28.47472 -27.30136 -25.30264 -24.66744 -23.84108 -23.61811 -22.28182 -20.79465 -19.75765 -18.70662 -18.68553 -18.41377 -17.87953 -16.84728 -16.69195 -16.59578 -16.20616 -15.98392 -15.86927 -15.43806 -15.35306 -15.00026 -14.50354 -14.35513 -14.07922 -13.78798 -13.23759 -13.15428 -12.93285 -12.75154 -12.68875 -12.63697 -12.57575 -12.34439 -12.20591 -11.82830 -11.72894 -11.40419 -10.85305 -10.59782 -10.01534 -9.52764 -9.05499 -8.18873 -6.28771 -0.40920 0.49369 1.03553 1.44109 1.44964 1.56649 1.60653 1.85466 2.25426 2.42331 2.70511 3.13693 3.26851 3.59821 3.75650 4.00259 4.05593 4.11367 4.15948 4.24661 4.33277 4.37928 4.44213 4.58636 4.61573 4.78885 4.85030 4.93375 5.02177 5.10634 5.22230 5.25234 5.48570 5.52279 5.65902 5.98352 6.05133 6.25109 6.28780 6.58711 6.71249 6.87012 7.41050 8.92384 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.038178 B = 0.003052 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.234968 B = 9172.482994 C = 9588.535234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.247 6.247 3 C 0.181 3.819 4 C -0.052 4.052 5 N -0.398 5.398 6 C 0.107 3.893 7 C 0.613 3.387 8 O -0.560 6.560 9 N -0.576 5.576 10 C 0.128 3.872 11 C 0.055 3.945 12 N -0.540 5.540 13 C 0.208 3.792 14 C -0.522 4.522 15 H 0.068 0.932 16 C 0.001 3.999 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.262 1.262 22 C 0.043 3.957 23 C 0.077 3.923 24 O -0.202 6.202 25 H 0.067 0.933 26 H 0.149 0.851 27 H 0.064 0.936 28 H 0.238 0.762 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.013 0.987 32 H 0.088 0.912 33 H -0.041 1.041 34 H 0.010 0.990 35 H 0.264 0.736 36 H 0.015 0.985 37 H 0.089 0.911 38 H 0.163 0.837 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.135 -19.937 -10.048 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.160 6.160 3 C 0.081 3.919 4 C -0.197 4.197 5 N -0.131 5.131 6 C -0.095 4.095 7 C 0.399 3.601 8 O -0.439 6.439 9 N -0.308 5.308 10 C 0.006 3.994 11 C -0.074 4.074 12 N -0.265 5.265 13 C 0.082 3.918 14 C -0.560 4.560 15 H 0.086 0.914 16 C -0.197 4.197 17 N -0.576 5.576 18 Si 0.794 3.206 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.187 1.187 22 C -0.086 4.086 23 C -0.045 4.045 24 O -0.090 6.090 25 H 0.085 0.915 26 H 0.167 0.833 27 H 0.083 0.917 28 H 0.255 0.745 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.031 0.969 32 H 0.107 0.893 33 H -0.024 1.024 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.107 0.893 38 H 0.179 0.821 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.895 -19.310 -10.414 24.495 hybrid contribution -0.977 0.392 1.265 1.646 sum -11.872 -18.918 -9.149 24.136 Atomic orbital electron populations 1.23598 0.74310 1.07577 1.03049 1.86468 1.25272 1.15912 1.88310 1.22398 0.91279 0.78493 0.99775 1.23330 0.92489 0.92732 1.11136 1.69867 1.23264 1.06845 1.13114 1.24293 0.80603 0.91271 1.13302 1.16019 0.84608 0.81500 0.78014 1.90842 1.23630 1.76999 1.52451 1.47918 1.07264 1.06995 1.68651 1.22011 1.01481 0.77050 0.98821 1.22395 0.88158 1.01460 0.95403 1.62055 1.10011 1.06593 1.47800 1.19378 0.91759 0.94375 0.86268 1.21478 1.33145 0.92348 1.09069 0.91403 1.25914 0.95006 1.04036 0.94729 1.70090 1.35892 1.37450 1.14186 0.85380 0.77447 0.78963 0.78825 1.20011 1.20962 1.18654 1.22494 1.01328 0.88128 0.96686 1.23283 0.78760 1.04427 0.97981 1.84402 1.38744 1.15624 1.70255 0.91453 0.83319 0.91710 0.74538 0.88715 0.88407 0.96891 0.89329 1.02368 0.97181 0.92735 0.96656 0.89312 0.82135 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 10.78 113.37 1.22 1.29 16 2 O -0.25 -3.51 10.55 -64.87 -0.68 -4.20 16 3 C 0.18 3.45 7.95 67.36 0.54 3.98 16 4 C -0.05 -0.92 11.92 84.04 1.00 0.08 16 5 N -0.40 -9.38 7.51 -304.57 -2.29 -11.67 16 6 C 0.11 2.96 7.86 87.03 0.68 3.64 16 7 C 0.61 19.77 7.69 86.52 0.67 20.44 16 8 O -0.56 -20.83 16.57 1.03 0.02 -20.81 16 9 N -0.58 -18.07 3.00 -821.44 -2.47 -20.54 16 10 C 0.13 4.09 6.62 86.50 0.57 4.66 16 11 C 0.05 2.13 5.47 86.54 0.47 2.60 16 12 N -0.54 -22.99 4.62 -898.87 -4.15 -27.14 16 13 C 0.21 11.00 4.72 85.56 0.40 11.41 16 14 C -0.52 -29.07 8.41 25.60 0.22 -28.85 16 15 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 16 C 0.00 0.06 5.46 84.65 0.46 0.52 16 17 N -0.94 -56.12 13.29 21.45 0.28 -55.84 16 18 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 22 C 0.04 1.51 5.62 86.39 0.49 1.99 16 23 C 0.08 2.24 6.43 86.35 0.56 2.80 16 24 O -0.20 -5.09 10.34 16.84 0.17 -4.92 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.15 0.26 8.14 -2.38 -0.02 0.24 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.24 2.26 8.06 -2.91 -0.02 2.24 16 29 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.10 3.03 7.08 -2.39 -0.02 3.01 16 31 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.09 3.62 6.67 -2.39 -0.02 3.61 16 33 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16 34 H 0.01 0.57 7.97 -2.39 -0.02 0.55 16 35 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.09 3.02 7.99 -2.38 -0.02 3.00 16 38 H 0.16 4.24 3.80 -54.07 -0.21 4.04 16 39 H 0.09 2.37 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -70.28 327.79 1.06 -69.21 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 0.87 Total: 5.45 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 7.28 Total: 24.56 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -8.62 Total: -115.19 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.49 Total: -29.93 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.28 1.06 -69.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195795179.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.245 kcal (2) G-P(sol) polarization free energy of solvation -70.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds