Wall clock time and date at job start Tue Mar 31 2020 03:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46512 * 1 3 3 N 1.28465 * 124.87708 * 2 1 4 4 C 1.31861 * 110.05923 * 179.97438 * 3 2 1 5 5 C 1.47581 * 126.51979 * 179.97438 * 4 3 2 6 6 O 1.21493 * 119.99582 * 179.97438 * 5 4 3 7 7 O 1.34728 * 120.00485 * 0.02562 * 5 4 3 8 8 C 1.41547 * 106.95202 * 0.02562 * 4 3 2 9 9 C 1.35046 * 124.87577 * 179.97438 * 2 1 3 10 10 C 1.50701 * 126.38359 * 0.05802 * 9 2 1 11 11 N 1.46894 * 109.47102 * 84.65884 * 10 9 2 12 12 C 1.47443 * 111.00122 * 75.65426 * 11 10 9 13 13 C 1.54318 * 107.23563 * 123.25682 * 12 11 10 14 14 C 1.55144 * 103.01840 * 22.28059 * 13 12 11 15 15 O 1.42902 * 110.98642 * 82.47714 * 14 13 12 16 16 C 1.50701 * 110.99114 * 206.25285 * 14 13 12 17 17 H 1.08004 * 119.99583 * 118.54871 * 16 14 13 18 18 C 1.37870 * 120.00228 * 298.55029 * 16 14 13 19 19 N 1.31511 * 120.00116 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99695 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47224 * 90.00377 * 20 18 16 22 22 H 1.48503 * 109.47184 * 209.99819 * 20 18 16 23 23 H 1.48503 * 109.47396 * 330.00155 * 20 18 16 24 24 C 1.47851 * 111.00174 * 196.49502 * 11 10 9 25 25 H 1.08992 * 109.47305 * 85.17458 * 1 2 3 26 26 H 1.08999 * 109.46653 * 205.17789 * 1 2 3 27 27 H 1.08996 * 109.46351 * 325.17482 * 1 2 3 28 28 H 0.96701 * 117.00052 * 180.02562 * 7 5 4 29 29 H 1.08000 * 127.24760 * 179.74200 * 8 4 3 30 30 H 1.09000 * 109.46827 * 204.65737 * 10 9 2 31 31 H 1.08996 * 109.46855 * 324.66201 * 10 9 2 32 32 H 1.09000 * 109.88990 * 242.65934 * 12 11 10 33 33 H 1.09003 * 109.89090 * 3.85074 * 12 11 10 34 34 H 1.08996 * 110.70984 * 140.66459 * 13 12 11 35 35 H 1.09004 * 110.70677 * 263.72799 * 13 12 11 36 36 H 0.96708 * 113.99983 * 61.45626 * 15 14 13 37 37 H 0.96999 * 119.99921 * 179.97438 * 19 18 16 38 38 H 1.08998 * 110.36997 * 332.47221 * 24 11 10 39 39 H 1.08999 * 110.37191 * 94.80572 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1997 1.0539 0.0000 4 6 3.4745 0.7167 0.0006 5 6 4.6268 1.6387 0.0002 6 8 5.7585 1.1965 0.0013 7 8 4.4240 2.9706 -0.0002 8 6 3.5272 -0.6978 0.0003 9 6 2.2373 -1.1079 0.0005 10 6 1.7531 -2.5350 -0.0001 11 7 1.4749 -2.9571 -1.3793 12 6 2.7257 -3.2276 -2.1117 13 6 2.6473 -4.6790 -2.6299 14 6 1.1219 -4.9612 -2.6499 15 8 0.5216 -4.4456 -3.8398 16 6 0.8435 -6.4350 -2.5032 17 1 0.2780 -6.7960 -1.6568 18 6 1.3107 -7.3223 -3.4493 19 7 1.9998 -6.8828 -4.4795 20 14 0.9661 -9.1492 -3.2669 21 1 -0.3117 -9.4822 -3.9463 22 1 2.0716 -9.9255 -3.8838 23 1 0.8645 -9.4924 -1.8256 24 6 0.6426 -4.1789 -1.4019 25 1 -0.3633 0.0864 -1.0239 26 1 -0.3632 -0.9300 0.4372 27 1 -0.3632 0.8436 0.5869 28 1 5.2097 3.5343 -0.0008 29 1 4.4106 -1.3190 -0.0032 30 1 2.5205 -3.1792 0.4292 31 1 0.8421 -2.6098 0.5935 32 1 2.8202 -2.5388 -2.9512 33 1 3.5786 -3.1186 -1.4418 34 1 3.0662 -4.7532 -3.6334 35 1 3.1589 -5.3595 -1.9491 36 1 0.8627 -4.8391 -4.6548 37 1 2.3288 -7.5072 -5.1449 38 1 0.8073 -4.7669 -0.4990 39 1 -0.4113 -3.9183 -1.4989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605538607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:58 Heat of formation + Delta-G solvation = -49.589692 kcal Electronic energy + Delta-G solvation = -23955.295087 eV Core-core repulsion = 20285.992361 eV Total energy + Delta-G solvation = -3669.302726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.74795 -39.90034 -38.46053 -36.14395 -35.01721 -33.55072 -32.18832 -31.91657 -29.21796 -28.15649 -27.86946 -25.70168 -24.21641 -23.85646 -21.15187 -20.65234 -19.80435 -19.62783 -17.83269 -17.20445 -16.80238 -16.46226 -16.20233 -15.47181 -15.30362 -14.93341 -14.67679 -14.13314 -14.11923 -13.56641 -13.40203 -12.87682 -12.67054 -12.64976 -12.48681 -12.08232 -11.68626 -11.65398 -11.39243 -11.26842 -11.05689 -10.91726 -10.87449 -10.77731 -10.46656 -10.36004 -9.90814 -9.32355 -9.19833 -8.98068 -8.64383 -8.13621 -7.80737 -6.25783 -4.34657 1.29646 2.03198 2.34225 3.03260 3.15214 3.18862 3.26562 3.28591 4.24407 4.33526 4.48598 4.69777 4.99105 5.02168 5.03490 5.12896 5.35117 5.47878 5.56580 5.61256 5.67554 5.84270 5.88029 6.02279 6.10710 6.31972 6.32179 6.40648 6.56242 6.69166 6.78957 6.99974 7.33733 7.43425 7.49917 7.55939 7.70019 7.76817 7.98360 8.09374 8.67568 9.34193 9.45632 10.81066 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028920 B = 0.003446 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.963296 B = 8122.557308 C = 8588.037986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.262 5.262 3 N -0.238 5.238 4 C -0.017 4.017 5 C 0.578 3.422 6 O -0.510 6.510 7 O -0.504 6.504 8 C -0.171 4.171 9 C 0.042 3.958 10 C 0.112 3.888 11 N -0.525 5.525 12 C 0.045 3.955 13 C -0.144 4.144 14 C 0.253 3.747 15 O -0.580 6.580 16 C -0.538 4.538 17 H 0.061 0.939 18 C 0.072 3.928 19 N -0.893 5.893 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.059 3.941 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.412 0.588 29 H 0.162 0.838 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.378 0.622 37 H 0.267 0.733 38 H 0.050 0.950 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 12.701 9.206 15.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.051 5.051 3 N -0.076 5.076 4 C -0.173 4.173 5 C 0.420 3.580 6 O -0.396 6.396 7 O -0.314 6.314 8 C -0.199 4.199 9 C -0.082 4.082 10 C -0.018 4.018 11 N -0.249 5.249 12 C -0.083 4.083 13 C -0.183 4.183 14 C 0.212 3.788 15 O -0.388 6.388 16 C -0.577 4.577 17 H 0.079 0.921 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.727 3.273 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.068 4.068 25 H 0.111 0.889 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.270 0.730 29 H 0.180 0.820 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.227 0.773 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.197 13.968 9.250 16.796 hybrid contribution 1.696 -2.291 -0.044 2.851 sum 0.500 11.677 9.207 14.878 Atomic orbital electron populations 1.22214 0.72715 1.05002 1.05261 1.45384 1.08054 1.02566 1.49138 1.73628 1.02617 1.13631 1.17723 1.20467 0.89711 0.92275 1.14822 1.19280 0.86633 0.80449 0.71642 1.90914 1.23742 1.78231 1.46737 1.84655 1.43108 1.18066 1.85602 1.21437 0.97040 0.92457 1.09011 1.21404 0.90209 0.91041 1.05558 1.20754 1.00610 0.87644 0.92804 1.63612 1.16729 1.34433 1.10156 1.22878 0.89390 0.98711 0.97298 1.23270 1.01154 0.92190 1.01728 1.19507 0.87018 0.90257 0.81986 1.86131 1.67589 1.67889 1.17141 1.21516 1.35438 0.91447 1.09261 0.92104 1.24995 0.93800 0.99371 0.94873 1.69732 1.36165 1.35418 1.11898 0.86483 0.78035 0.84393 0.78412 1.20441 1.21098 1.19832 1.23024 0.97098 0.88153 0.98493 0.88913 0.88265 0.88941 0.72993 0.82027 0.91693 0.89951 0.91712 0.94082 0.90373 0.92500 0.77310 0.92317 0.93192 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 11.17 59.85 0.67 1.48 16 2 N -0.26 -3.49 3.70 -63.85 -0.24 -3.72 16 3 N -0.24 -3.51 11.99 33.41 0.40 -3.11 16 4 C -0.02 -0.25 7.17 -82.78 -0.59 -0.84 16 5 C 0.58 8.07 8.34 34.54 0.29 8.35 16 6 O -0.51 -8.08 17.71 -19.26 -0.34 -8.42 16 7 O -0.50 -5.41 13.44 -40.57 -0.55 -5.96 16 8 C -0.17 -2.53 10.38 -39.35 -0.41 -2.93 16 9 C 0.04 0.59 6.10 -82.21 -0.50 0.09 16 10 C 0.11 1.55 4.72 -4.98 -0.02 1.53 16 11 N -0.52 -9.19 5.11 -232.70 -1.19 -10.37 16 12 C 0.04 0.84 6.52 -2.84 -0.02 0.82 16 13 C -0.14 -3.19 5.37 -24.91 -0.13 -3.32 16 14 C 0.25 5.95 0.87 -89.64 -0.08 5.87 16 15 O -0.58 -14.60 13.16 -35.23 -0.46 -15.06 16 16 C -0.54 -13.80 8.27 -34.44 -0.28 -14.09 16 17 H 0.06 1.54 7.79 -52.48 -0.41 1.13 16 18 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 19 N -0.89 -23.26 10.75 55.43 0.60 -22.66 16 20 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 C 0.06 1.16 5.81 -2.30 -0.01 1.15 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.10 0.76 6.91 -51.93 -0.36 0.40 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.41 2.17 9.11 45.56 0.42 2.58 16 29 H 0.16 2.25 8.06 -52.49 -0.42 1.82 16 30 H 0.07 0.88 7.78 -51.93 -0.40 0.48 16 31 H 0.08 0.96 6.97 -51.93 -0.36 0.60 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.04 0.70 7.02 -51.93 -0.36 0.34 16 34 H 0.08 1.87 7.54 -51.93 -0.39 1.48 16 35 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 36 H 0.38 9.68 7.56 45.56 0.34 10.02 16 37 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 38 H 0.05 0.93 7.70 -51.93 -0.40 0.53 16 39 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 332.04 15.07 5.00 5.00 Total: -1.00 -31.11 332.04 -6.58 -37.69 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -3.59 Total: 11.70 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -1.19 Total: -0.13 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: -0.43 Total: -39.87 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -1.35 Total: -29.44 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.11 -6.58 -37.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605538607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.897 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds