Wall clock time and date at job start Tue Mar 31 2020 04:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35671 * 116.99672 * 2 1 4 4 C 1.39293 * 119.61426 * 180.02562 * 3 2 1 5 5 C 1.38328 * 119.30322 * 180.02562 * 4 3 2 6 6 C 1.38786 * 118.55899 * 359.97438 * 5 4 3 7 7 C 1.39122 * 119.18956 * 0.02562 * 6 5 4 8 8 C 1.48149 * 119.69094 * 179.97438 * 7 6 5 9 9 O 1.21523 * 119.99773 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00231 * 180.27124 * 8 7 6 11 11 C 1.46500 * 120.00429 * 179.71953 * 10 8 7 12 12 C 1.52999 * 109.47525 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.47064 * 295.00396 * 12 11 10 14 14 C 1.52999 * 109.47323 * 175.00520 * 12 11 10 15 15 O 1.42901 * 109.47086 * 305.00301 * 14 12 11 16 16 N 1.46500 * 109.47034 * 55.00318 * 12 11 10 17 17 C 1.36935 * 119.99823 * 205.00094 * 16 12 11 18 18 H 1.08002 * 120.00075 * 0.02562 * 17 16 12 19 19 C 1.38813 * 119.99657 * 180.02562 * 17 16 12 20 20 N 1.31616 * 120.00363 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99918 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46955 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47454 * 119.99573 * 21 19 17 24 24 H 1.48498 * 109.47007 * 240.00020 * 21 19 17 25 25 N 1.31902 * 119.61860 * 0.27335 * 3 2 1 26 26 H 1.09006 * 109.47350 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47512 * 299.99778 * 1 2 3 28 28 H 1.08994 * 109.47520 * 59.99962 * 1 2 3 29 29 H 1.07997 * 120.34723 * 0.03841 * 4 3 2 30 30 H 1.07998 * 120.72039 * 179.97438 * 5 4 3 31 31 H 1.08004 * 120.40207 * 180.02562 * 6 5 4 32 32 H 0.97000 * 120.00112 * 359.72842 * 10 8 7 33 33 H 1.09000 * 109.47205 * 300.01086 * 11 10 8 34 34 H 1.09007 * 109.46719 * 60.00072 * 11 10 8 35 35 H 1.08999 * 109.47129 * 64.99510 * 14 12 11 36 36 H 1.08997 * 109.47123 * 185.00086 * 14 12 11 37 37 H 0.96695 * 114.00408 * 180.02562 * 15 14 12 38 38 H 0.97004 * 119.99789 * 25.00061 * 16 12 11 39 39 H 0.96999 * 120.00252 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 3.4363 1.2725 -0.0005 5 6 4.0575 2.5084 0.0000 6 6 3.2664 3.6487 0.0005 7 6 1.8817 3.5138 0.0010 8 6 1.0265 4.7235 0.0022 9 8 1.5352 5.8271 0.0031 10 7 -0.3155 4.6001 0.0082 11 6 -1.1612 5.7963 0.0155 12 6 -2.6335 5.3802 0.0220 13 1 -2.8697 4.8657 -0.9095 14 6 -3.5145 6.6239 0.1552 15 8 -3.1256 7.3610 1.3161 16 7 -2.8821 4.4822 1.1525 17 6 -3.9206 3.5910 1.1034 18 1 -4.5561 3.5498 0.2311 19 6 -4.1565 2.7405 2.1748 20 7 -3.3818 2.7903 3.2377 21 14 -5.5728 1.5243 2.1076 22 1 -6.2857 1.6658 0.8127 23 1 -5.0446 0.1420 2.2327 24 1 -6.5134 1.7977 3.2237 25 7 1.3191 2.3102 0.0055 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 4.0240 0.3664 -0.0016 30 1 5.1348 2.5844 0.0000 31 1 3.7201 4.6288 0.0005 32 1 -0.7216 3.7192 0.0078 33 1 -0.9470 6.3873 0.9061 34 1 -0.9555 6.3921 -0.8739 35 1 -3.3956 7.2498 -0.7292 36 1 -4.5576 6.3220 0.2492 37 1 -3.6433 8.1643 1.4637 38 1 -2.3111 4.5190 1.9358 39 1 -3.5464 2.1958 3.9862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676597940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:26 Heat of formation + Delta-G solvation = -68.837122 kcal Electronic energy + Delta-G solvation = -23910.221599 eV Core-core repulsion = 20240.084242 eV Total energy + Delta-G solvation = -3670.137357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.76573 -39.16586 -37.65161 -37.00732 -34.90363 -33.57280 -32.62837 -31.30025 -30.76045 -28.36089 -27.24569 -25.73622 -23.98509 -23.47395 -22.82404 -20.48754 -20.06754 -18.39828 -17.62722 -17.40316 -16.59565 -16.05147 -15.98946 -15.92563 -15.53704 -15.00352 -14.63908 -14.14138 -14.08558 -13.72510 -13.50790 -13.32806 -13.15126 -12.89964 -12.74872 -12.23921 -11.97543 -11.65079 -11.42538 -11.05294 -10.89778 -10.86411 -10.57246 -10.27216 -10.08164 -10.02505 -9.78841 -9.49186 -9.34232 -8.98453 -8.67641 -8.46199 -7.02996 -5.80614 -3.10989 0.68627 1.23506 2.95246 3.10114 3.37345 3.43159 3.44693 3.46099 3.94617 4.17175 4.52207 4.82570 4.92942 4.95863 4.98810 5.23897 5.40544 5.45370 5.47020 5.52520 5.56726 5.58502 5.86570 5.90361 5.93378 6.02672 6.04825 6.06026 6.28985 6.36618 6.50863 6.73895 6.88593 7.20490 7.62699 7.63518 8.01976 8.20983 8.35603 8.53535 9.48106 10.03577 10.40187 11.40823 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.005639 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.550914 B = 4963.846690 C = 6928.201997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C 0.322 3.678 4 C -0.173 4.173 5 C -0.050 4.050 6 C -0.154 4.154 7 C 0.128 3.872 8 C 0.564 3.436 9 O -0.545 6.545 10 N -0.689 5.689 11 C 0.115 3.885 12 C 0.165 3.835 13 H 0.066 0.934 14 C 0.060 3.940 15 O -0.560 6.560 16 N -0.712 5.712 17 C -0.246 4.246 18 H 0.070 0.930 19 C -0.007 4.007 20 N -0.924 5.924 21 Si 0.903 3.097 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 N -0.508 5.508 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.419 0.581 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.027 0.973 36 H 0.049 0.951 37 H 0.364 0.636 38 H 0.389 0.611 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.659 -0.385 -8.668 13.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.216 6.216 3 C 0.141 3.859 4 C -0.194 4.194 5 C -0.076 4.076 6 C -0.176 4.176 7 C -0.010 4.010 8 C 0.348 3.652 9 O -0.423 6.423 10 N -0.339 5.339 11 C -0.009 4.009 12 C 0.054 3.946 13 H 0.084 0.916 14 C -0.021 4.021 15 O -0.363 6.363 16 N -0.354 5.354 17 C -0.377 4.377 18 H 0.088 0.912 19 C -0.204 4.204 20 N -0.571 5.571 21 Si 0.735 3.265 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 N -0.235 5.235 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.162 0.838 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.257 0.743 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.208 0.792 38 H 0.223 0.777 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.434 -0.546 -8.648 13.563 hybrid contribution -0.807 -0.533 0.308 1.015 sum 9.627 -1.080 -8.340 12.783 Atomic orbital electron populations 1.22981 0.76043 1.03247 1.03656 1.86206 1.23756 1.24020 1.87647 1.19806 0.89336 0.84641 0.92118 1.21258 0.92022 0.99769 1.06398 1.21395 1.00684 0.90878 0.94606 1.21961 0.93097 1.00714 1.01801 1.20902 0.92187 0.90391 0.97492 1.17844 0.82655 0.87165 0.77575 1.90752 1.74230 1.25830 1.51486 1.45882 1.05018 1.11936 1.71101 1.21644 0.90312 0.86705 1.02218 1.20591 0.90542 0.89949 0.93502 0.91640 1.23028 0.99537 0.93613 0.85961 1.86571 1.62154 1.40367 1.47243 1.42369 1.36051 1.40189 1.16773 1.19244 1.06180 1.11187 1.01069 0.91176 1.24730 0.99120 1.00076 0.96465 1.69692 1.39823 1.40956 1.06651 0.86188 0.82038 0.81118 0.77195 1.20614 1.21885 1.21922 1.67249 1.40900 0.98184 1.17121 0.88583 0.90999 0.92022 0.83805 0.83534 0.83284 0.74266 0.90301 0.91841 0.95504 0.93286 0.79158 0.77655 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.38 101.05 1.05 1.54 16 2 O -0.31 -4.48 10.48 -18.72 -0.20 -4.68 16 3 C 0.32 4.75 7.49 -17.13 -0.13 4.62 16 4 C -0.17 -1.99 10.05 -39.16 -0.39 -2.39 16 5 C -0.05 -0.52 10.16 -39.35 -0.40 -0.92 16 6 C -0.15 -2.04 9.63 -39.05 -0.38 -2.41 16 7 C 0.13 2.08 6.74 -83.03 -0.56 1.52 16 8 C 0.56 10.37 7.81 -12.19 -0.10 10.27 16 9 O -0.54 -10.91 16.32 5.35 0.09 -10.82 16 10 N -0.69 -12.77 5.38 -61.15 -0.33 -13.10 16 11 C 0.12 2.11 5.12 -4.04 -0.02 2.09 16 12 C 0.17 3.18 2.84 -67.93 -0.19 2.98 16 13 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 14 C 0.06 1.04 6.86 37.16 0.25 1.29 16 15 O -0.56 -9.99 12.64 -35.23 -0.45 -10.44 16 16 N -0.71 -17.07 4.51 -53.42 -0.24 -17.31 16 17 C -0.25 -6.44 9.93 -15.06 -0.15 -6.59 16 18 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.19 13.06 55.49 0.72 -26.46 16 21 Si 0.90 21.56 29.55 -169.99 -5.02 16.54 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 N -0.51 -8.38 8.39 -9.87 -0.08 -8.47 16 26 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 28 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 29 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.15 1.82 7.63 -52.48 -0.40 1.42 16 32 H 0.42 8.13 7.46 -40.82 -0.30 7.83 16 33 H 0.08 1.60 7.39 -51.93 -0.38 1.22 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.36 4.66 9.12 45.56 0.42 5.07 16 38 H 0.39 10.44 7.80 -40.82 -0.32 10.12 16 39 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -32.38 342.65 -5.79 -38.16 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -4.34 Total: 19.68 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -1.11 Total: 11.73 kcal Atomic # 7 Polarization: -65.41 SS G_CDS: 0.07 Total: -65.33 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.55 Total: -25.94 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.38 -5.79 -38.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676597940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.674 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds