Wall clock time and date at job start Tue Mar 31 2020 04:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35664 * 117.00551 * 2 1 4 4 C 1.39284 * 119.61970 * 180.02562 * 3 2 1 5 5 C 1.38332 * 119.30487 * 179.97438 * 4 3 2 6 6 C 1.38782 * 118.56089 * 0.02562 * 5 4 3 7 7 C 1.39124 * 119.18571 * 359.97438 * 6 5 4 8 8 C 1.48161 * 119.68813 * 179.97438 * 7 6 5 9 9 O 1.21511 * 119.99766 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99806 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99923 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47226 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47434 * 64.99688 * 12 11 10 14 14 C 1.52997 * 109.47114 * 184.99495 * 12 11 10 15 15 O 1.42903 * 109.47059 * 55.00009 * 14 12 11 16 16 N 1.46498 * 109.46963 * 304.99288 * 12 11 10 17 17 C 1.36943 * 119.99752 * 154.72381 * 16 12 11 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 12 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 12 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 90.00155 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00015 * 21 19 17 24 24 H 1.48496 * 109.47166 * 329.99846 * 21 19 17 25 25 N 1.31907 * 119.61687 * 0.24777 * 3 2 1 26 26 H 1.09006 * 109.47124 * 60.00200 * 1 2 3 27 27 H 1.08998 * 109.47491 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47385 * 300.00675 * 1 2 3 29 29 H 1.08002 * 120.34915 * 0.02562 * 4 3 2 30 30 H 1.07995 * 120.71911 * 179.97438 * 5 4 3 31 31 H 1.08001 * 120.40944 * 180.02562 * 6 5 4 32 32 H 0.96998 * 119.99957 * 359.97438 * 10 8 7 33 33 H 1.08995 * 109.47176 * 59.99567 * 11 10 8 34 34 H 1.09008 * 109.46559 * 299.99697 * 11 10 8 35 35 H 1.08997 * 109.47241 * 175.00015 * 14 12 11 36 36 H 1.09002 * 109.47280 * 295.00109 * 14 12 11 37 37 H 0.96700 * 113.99965 * 180.02562 * 15 14 12 38 38 H 0.97001 * 120.00384 * 335.00737 * 16 12 11 39 39 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4364 1.2722 -0.0005 5 6 4.0577 2.5082 -0.0011 6 6 3.2667 3.6485 -0.0005 7 6 1.8820 3.5136 0.0000 8 6 1.0269 4.7235 0.0012 9 8 1.5357 5.8270 0.0012 10 7 -0.3152 4.6002 0.0012 11 6 -1.1607 5.7965 0.0018 12 6 -2.6331 5.3804 0.0023 13 1 -2.8643 4.8634 0.9337 14 6 -3.5147 6.6246 -0.1226 15 8 -3.1321 7.3648 -1.2836 16 7 -2.8880 4.4857 -1.1293 17 6 -3.9229 3.5904 -1.0746 18 1 -4.5538 3.5472 -0.1991 19 6 -4.1610 2.7386 -2.1445 20 7 -3.3917 2.7910 -3.2112 21 14 -5.5730 1.5180 -2.0702 22 1 -6.8008 2.1474 -2.6193 23 1 -5.2313 0.3164 -2.8731 24 1 -5.8094 1.1198 -0.6593 25 7 1.3193 2.3102 0.0050 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 4.0240 0.3661 -0.0014 30 1 5.1350 2.5840 -0.0011 31 1 3.7204 4.6286 -0.0013 32 1 -0.7212 3.7193 0.0001 33 1 -0.9509 6.3902 -0.8878 34 1 -0.9508 6.3893 0.8922 35 1 -4.5583 6.3230 -0.2116 36 1 -3.3909 7.2481 0.7629 37 1 -3.6501 8.1689 -1.4257 38 1 -2.3213 4.5244 -1.9156 39 1 -3.5583 2.1961 -3.9590 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676597942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:28 Heat of formation + Delta-G solvation = -68.761551 kcal Electronic energy + Delta-G solvation = -23911.114882 eV Core-core repulsion = 20240.980802 eV Total energy + Delta-G solvation = -3670.134080 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.76603 -39.16663 -37.65188 -37.00673 -34.90334 -33.57074 -32.62753 -31.29915 -30.76041 -28.35951 -27.24597 -25.73555 -23.98297 -23.47220 -22.82407 -20.48672 -20.06593 -18.39804 -17.62722 -17.40237 -16.59442 -16.05115 -15.98949 -15.92547 -15.53646 -15.00275 -14.63849 -14.14174 -14.08644 -13.72601 -13.50613 -13.32872 -13.14821 -12.89785 -12.74726 -12.23922 -11.97403 -11.65079 -11.42389 -11.05269 -10.87950 -10.86481 -10.57775 -10.27222 -10.11151 -10.02491 -9.78370 -9.49089 -9.34130 -8.97663 -8.67563 -8.46134 -7.02942 -5.80383 -3.10813 0.68702 1.23511 2.95405 3.10105 3.37862 3.43057 3.44775 3.45510 3.94602 4.17247 4.52394 4.82614 4.93001 4.95881 4.98858 5.23925 5.40612 5.45386 5.47005 5.52671 5.56755 5.58599 5.86591 5.90393 5.93214 6.02718 6.04904 6.06109 6.28999 6.36736 6.50897 6.73963 6.88732 7.20519 7.62367 7.63460 8.02092 8.20977 8.35913 8.53654 9.48266 10.03726 10.40342 11.40991 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.005647 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.840246 B = 4957.092387 C = 6925.021955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C 0.323 3.677 4 C -0.174 4.174 5 C -0.050 4.050 6 C -0.154 4.154 7 C 0.128 3.872 8 C 0.564 3.436 9 O -0.545 6.545 10 N -0.689 5.689 11 C 0.115 3.885 12 C 0.165 3.835 13 H 0.066 0.934 14 C 0.060 3.940 15 O -0.560 6.560 16 N -0.712 5.712 17 C -0.246 4.246 18 H 0.070 0.930 19 C -0.007 4.007 20 N -0.924 5.924 21 Si 0.904 3.096 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 N -0.508 5.508 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.419 0.581 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.027 0.973 37 H 0.364 0.636 38 H 0.389 0.611 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.700 -0.422 8.580 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.216 6.216 3 C 0.141 3.859 4 C -0.195 4.195 5 C -0.076 4.076 6 C -0.176 4.176 7 C -0.010 4.010 8 C 0.348 3.652 9 O -0.423 6.423 10 N -0.339 5.339 11 C -0.009 4.009 12 C 0.054 3.946 13 H 0.084 0.916 14 C -0.021 4.021 15 O -0.363 6.363 16 N -0.354 5.354 17 C -0.378 4.378 18 H 0.088 0.912 19 C -0.204 4.204 20 N -0.571 5.571 21 Si 0.735 3.265 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 N -0.235 5.235 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.162 0.838 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.257 0.743 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.208 0.792 38 H 0.223 0.777 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.482 -0.591 8.566 13.550 hybrid contribution -0.815 -0.527 -0.296 1.015 sum 9.667 -1.119 8.269 12.770 Atomic orbital electron populations 1.22983 0.76041 1.03242 1.03664 1.86203 1.23757 1.24028 1.87644 1.19802 0.89335 0.84639 0.92113 1.21257 0.92021 0.99769 1.06412 1.21394 1.00684 0.90877 0.94602 1.21960 0.93098 1.00713 1.01813 1.20906 0.92187 0.90393 0.97476 1.17844 0.82657 0.87161 0.77574 1.90749 1.74222 1.25839 1.51481 1.45884 1.05014 1.11939 1.71107 1.21645 0.90315 0.86709 1.02216 1.20589 0.90512 0.89987 0.93494 0.91638 1.23028 0.99572 0.93578 0.85953 1.86573 1.62435 1.40163 1.47160 1.42358 1.36443 1.40192 1.16381 1.19200 1.06517 1.11037 1.00998 0.91238 1.24730 0.99133 1.00036 0.96469 1.69687 1.39968 1.41001 1.06488 0.86257 0.82206 0.80895 0.77159 1.21787 1.21801 1.20776 1.67248 1.40899 0.98185 1.17136 0.91003 0.88580 0.92012 0.83805 0.83536 0.83284 0.74261 0.90299 0.91851 0.93293 0.95502 0.79160 0.77650 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.38 101.05 1.05 1.54 16 2 O -0.31 -4.48 10.47 -18.69 -0.20 -4.67 16 3 C 0.32 4.75 7.49 -17.13 -0.13 4.62 16 4 C -0.17 -2.00 10.05 -39.16 -0.39 -2.39 16 5 C -0.05 -0.52 10.16 -39.35 -0.40 -0.92 16 6 C -0.15 -2.04 9.63 -39.05 -0.38 -2.41 16 7 C 0.13 2.08 6.75 -83.02 -0.56 1.52 16 8 C 0.56 10.38 7.81 -12.19 -0.10 10.28 16 9 O -0.54 -10.91 16.32 5.36 0.09 -10.83 16 10 N -0.69 -12.78 5.38 -61.15 -0.33 -13.11 16 11 C 0.12 2.11 5.12 -4.04 -0.02 2.09 16 12 C 0.17 3.18 2.84 -67.93 -0.19 2.98 16 13 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 14 C 0.06 1.04 6.86 37.16 0.25 1.29 16 15 O -0.56 -9.99 12.64 -35.23 -0.45 -10.44 16 16 N -0.71 -17.07 4.51 -53.43 -0.24 -17.31 16 17 C -0.25 -6.46 9.93 -15.06 -0.15 -6.61 16 18 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 20 N -0.92 -27.18 13.06 55.49 0.72 -26.46 16 21 Si 0.90 21.55 29.55 -169.99 -5.02 16.53 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 N -0.51 -8.38 8.39 -9.87 -0.08 -8.47 16 26 H 0.07 1.17 8.11 -51.93 -0.42 0.74 16 27 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 29 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.15 1.82 7.63 -52.49 -0.40 1.42 16 32 H 0.42 8.15 7.46 -40.82 -0.30 7.84 16 33 H 0.08 1.60 7.39 -51.93 -0.38 1.22 16 34 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.36 4.66 9.12 45.56 0.42 5.07 16 38 H 0.39 10.44 7.80 -40.82 -0.32 10.13 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -32.35 342.65 -5.79 -38.14 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -4.34 Total: 19.73 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -1.11 Total: 11.73 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: 0.07 Total: -65.35 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.55 Total: -25.93 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.35 -5.79 -38.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676597942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.623 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds