Wall clock time and date at job start Tue Mar 31 2020 03:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47725 * 2 1 4 4 C 1.52998 * 109.47057 * 120.00163 * 2 1 3 5 5 N 1.46506 * 109.47237 * 174.99470 * 4 2 1 6 6 C 1.34773 * 119.99969 * 179.72043 * 5 4 2 7 7 O 1.21617 * 120.00330 * 0.02562 * 6 5 4 8 8 C 1.47386 * 119.99892 * 180.02562 * 6 5 4 9 9 C 1.47018 * 127.19203 * 359.68538 * 8 6 5 10 10 C 1.34176 * 105.95239 * 179.89112 * 9 8 6 11 11 O 1.34212 * 109.12618 * 0.37960 * 10 9 8 12 12 C 1.33655 * 110.90733 * 359.74350 * 11 10 9 13 13 C 1.50702 * 125.80068 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47401 * 270.00337 * 13 12 11 15 15 N 1.34780 * 120.00101 * 179.97438 * 14 13 12 16 16 O 1.21286 * 119.99976 * 0.02562 * 14 13 12 17 17 N 1.46510 * 109.46806 * 239.99775 * 2 1 3 18 18 C 1.36928 * 119.99804 * 85.00547 * 17 2 1 19 19 H 1.08002 * 120.00107 * 359.97438 * 18 17 2 20 20 C 1.38809 * 119.99946 * 179.97438 * 18 17 2 21 21 N 1.31620 * 120.00209 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00007 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47289 * 90.00080 * 22 20 18 24 24 H 1.48507 * 109.47202 * 209.99788 * 22 20 18 25 25 H 1.48504 * 109.47026 * 329.99950 * 22 20 18 26 26 H 1.09004 * 109.46798 * 300.00328 * 1 2 3 27 27 H 1.08995 * 109.47105 * 59.99578 * 1 2 3 28 28 H 1.08998 * 109.47635 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47671 * 54.99810 * 4 2 1 30 30 H 1.08998 * 109.47454 * 294.99808 * 4 2 1 31 31 H 0.97005 * 119.99811 * 0.02562 * 5 4 2 32 32 H 1.08005 * 127.02149 * 359.97438 * 9 8 6 33 33 H 1.08005 * 125.43342 * 180.12304 * 10 9 8 34 34 H 1.09000 * 109.46867 * 30.00878 * 13 12 11 35 35 H 1.08996 * 109.46976 * 150.00178 * 13 12 11 36 36 H 0.96999 * 119.99646 * 359.97438 * 15 14 13 37 37 H 0.97001 * 119.99548 * 179.97438 * 15 14 13 38 38 H 0.96996 * 119.99620 * 265.00312 * 17 2 1 39 39 H 0.97000 * 120.00654 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1735 -1.4239 2.1935 7 8 3.5691 -1.8760 3.1472 8 6 5.6424 -1.5293 2.1347 9 6 6.5257 -1.0474 1.0629 10 6 7.7733 -1.3611 1.4442 11 8 7.7262 -1.9882 2.6299 12 6 6.4659 -2.0997 3.0607 13 6 6.0289 -2.7461 4.3500 14 6 5.7659 -4.2110 4.1136 15 7 5.3619 -4.9961 5.1319 16 8 5.9189 -4.6837 3.0071 17 7 2.0183 -0.6907 -1.1962 18 6 2.1491 -0.0076 -2.3757 19 1 1.8920 1.0402 -2.4243 20 6 2.6122 -0.6619 -3.5090 21 7 2.7375 -0.0054 -4.6429 22 14 3.0577 -2.4740 -3.4248 23 1 1.8610 -3.2933 -3.7441 24 1 4.1333 -2.7655 -4.4064 25 1 3.5329 -2.8038 -2.0571 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6054 -1.7198 1.2952 30 1 1.7517 -0.1584 2.1370 31 1 3.9825 -0.4623 0.4318 32 1 6.2308 -0.5428 0.1547 33 1 8.6718 -1.1470 0.8843 34 1 6.8144 -2.6339 5.0972 35 1 5.1174 -2.2663 4.7063 36 1 5.2406 -4.6182 6.0169 37 1 5.1923 -5.9389 4.9795 38 1 2.2489 -1.6319 -1.1526 39 1 3.0615 -0.4625 -5.4348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752896422.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:13 Heat of formation + Delta-G solvation = -51.605185 kcal Electronic energy + Delta-G solvation = -23832.974430 eV Core-core repulsion = 20163.584306 eV Total energy + Delta-G solvation = -3669.390124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.60223 -39.49833 -39.14791 -36.47245 -33.90018 -33.68309 -32.98253 -32.14203 -31.68826 -29.39844 -27.76562 -25.99681 -23.52359 -22.82109 -21.60991 -20.68197 -20.27201 -19.50743 -18.24215 -17.68654 -17.31369 -17.03844 -15.88574 -15.74650 -15.68564 -15.32402 -15.18987 -14.46848 -14.36567 -13.89905 -13.76724 -13.32699 -12.99134 -12.93918 -12.71054 -12.53815 -12.23333 -12.07958 -11.85111 -11.61611 -10.93918 -10.81666 -10.41043 -10.24621 -10.05122 -9.89855 -9.79146 -9.75881 -9.62910 -9.00831 -8.81330 -8.55774 -7.35187 -5.81825 -3.18651 1.32458 2.11459 2.47945 2.67957 3.33783 3.37102 3.42806 3.45996 3.51356 3.64628 4.31825 4.56069 4.73367 4.77198 4.92912 4.96194 5.21726 5.25282 5.35690 5.47519 5.51425 5.75642 5.79985 5.90651 5.98340 6.09248 6.21549 6.31074 6.38751 6.55573 6.68179 6.73031 6.94673 6.99462 7.07405 7.85878 7.93522 8.06515 8.36728 8.46931 9.14793 9.87452 10.06640 11.35989 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.004540 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.718552 B = 6166.416125 C = 6736.559821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.164 3.836 3 H 0.062 0.938 4 C 0.113 3.887 5 N -0.706 5.706 6 C 0.587 3.413 7 O -0.559 6.559 8 C -0.218 4.218 9 C -0.184 4.184 10 C -0.034 4.034 11 O -0.173 6.173 12 C 0.080 3.920 13 C -0.068 4.068 14 C 0.527 3.473 15 N -0.854 5.854 16 O -0.531 6.531 17 N -0.749 5.749 18 C -0.247 4.247 19 H 0.092 0.908 20 C 0.010 3.990 21 N -0.931 5.931 22 Si 0.879 3.121 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.275 1.275 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.411 0.589 32 H 0.163 0.837 33 H 0.210 0.790 34 H 0.112 0.888 35 H 0.143 0.857 36 H 0.402 0.598 37 H 0.403 0.597 38 H 0.363 0.637 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.976 -3.671 21.378 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 H 0.080 0.920 4 C -0.012 4.012 5 N -0.357 5.357 6 C 0.375 3.625 7 O -0.440 6.440 8 C -0.223 4.223 9 C -0.203 4.203 10 C -0.099 4.099 11 O -0.069 6.069 12 C 0.026 3.974 13 C -0.107 4.107 14 C 0.311 3.689 15 N -0.419 5.419 16 O -0.406 6.406 17 N -0.393 5.393 18 C -0.377 4.377 19 H 0.109 0.891 20 C -0.186 4.186 21 N -0.579 5.579 22 Si 0.709 3.291 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.201 1.201 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.247 0.753 32 H 0.180 0.820 33 H 0.226 0.774 34 H 0.130 0.870 35 H 0.161 0.839 36 H 0.230 0.770 37 H 0.234 0.766 38 H 0.196 0.804 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.943 -4.018 21.183 22.978 hybrid contribution 0.271 -1.283 -0.461 1.390 sum 8.214 -5.301 20.722 22.913 Atomic orbital electron populations 1.22327 0.97721 1.01309 1.00917 1.20489 0.92906 0.96024 0.85100 0.91960 1.21765 0.79180 1.01199 0.99006 1.45806 1.08235 1.58574 1.23075 1.17188 0.85244 0.77559 0.82492 1.90673 1.69684 1.49725 1.33920 1.21170 0.94294 1.09448 0.97386 1.23009 0.92023 1.04830 1.00439 1.23848 1.00046 1.00253 0.85790 1.83693 1.28624 1.61240 1.33305 1.21575 0.81210 0.98505 0.96072 1.20283 1.05111 0.92809 0.92512 1.20207 0.75962 0.88162 0.84566 1.43712 1.72232 1.13402 1.12516 1.90814 1.50814 1.75512 1.23437 1.42857 1.79654 1.09642 1.07107 1.19046 1.37450 0.95618 0.85577 0.89062 1.24636 1.01226 0.97268 0.95510 1.69694 1.52320 1.35602 1.00245 0.86650 0.78262 0.86921 0.77303 1.21094 1.21693 1.20121 0.93842 0.91813 0.93306 0.91816 0.91268 0.75270 0.81977 0.77357 0.86970 0.83905 0.77008 0.76589 0.80431 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.49 37.16 0.35 -2.36 16 2 C 0.16 3.00 3.05 -67.93 -0.21 2.79 16 3 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 4 C 0.11 1.87 5.23 -4.04 -0.02 1.85 16 5 N -0.71 -12.09 5.38 -61.39 -0.33 -12.42 16 6 C 0.59 10.25 7.81 -12.54 -0.10 10.15 16 7 O -0.56 -10.29 14.85 5.26 0.08 -10.22 16 8 C -0.22 -3.47 6.31 -103.27 -0.65 -4.13 16 9 C -0.18 -2.58 10.60 -37.46 -0.40 -2.98 16 10 C -0.03 -0.40 12.03 29.30 0.35 -0.05 16 11 O -0.17 -2.30 10.52 7.65 0.08 -2.22 16 12 C 0.08 1.13 5.87 -34.96 -0.21 0.93 16 13 C -0.07 -0.73 5.70 -29.04 -0.17 -0.89 16 14 C 0.53 6.63 8.09 -10.99 -0.09 6.54 16 15 N -0.85 -6.57 8.87 31.22 0.28 -6.29 16 16 O -0.53 -9.53 16.87 5.55 0.09 -9.44 16 17 N -0.75 -16.90 4.37 -53.42 -0.23 -17.13 16 18 C -0.25 -6.66 10.41 -15.06 -0.16 -6.81 16 19 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 20 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 21 N -0.93 -28.61 13.97 55.49 0.78 -27.83 16 22 Si 0.88 22.21 27.73 -169.99 -4.71 17.49 16 23 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.41 7.10 7.31 -40.82 -0.30 6.80 16 32 H 0.16 2.13 7.74 -52.48 -0.41 1.72 16 33 H 0.21 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.14 1.50 6.49 -51.93 -0.34 1.16 16 36 H 0.40 1.60 8.83 -40.82 -0.36 1.24 16 37 H 0.40 2.81 8.93 -40.82 -0.36 2.45 16 38 H 0.36 8.41 5.66 -40.82 -0.23 8.18 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 339.72 15.07 5.12 5.12 Total: -1.00 -36.86 339.72 -5.20 -42.06 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -4.97 Total: 15.65 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.38 Total: 5.23 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: 0.49 Total: -63.68 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.25 Total: -21.87 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.86 -5.20 -42.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752896422.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.545 kcal (2) G-P(sol) polarization free energy of solvation -36.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds