Wall clock time and date at job start Tue Mar 31 2020 03:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47725 * 2 1 4 4 C 1.52998 * 109.47057 * 120.00163 * 2 1 3 5 5 N 1.46506 * 109.47237 * 174.99470 * 4 2 1 6 6 C 1.34773 * 119.99969 * 179.72043 * 5 4 2 7 7 O 1.21617 * 120.00330 * 0.02562 * 6 5 4 8 8 C 1.47386 * 119.99892 * 180.02562 * 6 5 4 9 9 C 1.47018 * 127.19203 * 359.68538 * 8 6 5 10 10 C 1.34176 * 105.95239 * 179.89112 * 9 8 6 11 11 O 1.34212 * 109.12618 * 0.37960 * 10 9 8 12 12 C 1.33655 * 110.90733 * 359.74350 * 11 10 9 13 13 C 1.50702 * 125.80068 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47401 * 270.00337 * 13 12 11 15 15 N 1.34780 * 120.00101 * 179.97438 * 14 13 12 16 16 O 1.21286 * 119.99976 * 0.02562 * 14 13 12 17 17 N 1.46510 * 109.46806 * 239.99775 * 2 1 3 18 18 C 1.36928 * 119.99804 * 85.00547 * 17 2 1 19 19 H 1.08002 * 120.00107 * 359.97438 * 18 17 2 20 20 C 1.38809 * 119.99946 * 179.97438 * 18 17 2 21 21 N 1.31620 * 120.00209 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00007 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47289 * 90.00080 * 22 20 18 24 24 H 1.48507 * 109.47202 * 209.99788 * 22 20 18 25 25 H 1.48504 * 109.47026 * 329.99950 * 22 20 18 26 26 H 1.09004 * 109.46798 * 300.00328 * 1 2 3 27 27 H 1.08995 * 109.47105 * 59.99578 * 1 2 3 28 28 H 1.08998 * 109.47635 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47671 * 54.99810 * 4 2 1 30 30 H 1.08998 * 109.47454 * 294.99808 * 4 2 1 31 31 H 0.97005 * 119.99811 * 0.02562 * 5 4 2 32 32 H 1.08005 * 127.02149 * 359.97438 * 9 8 6 33 33 H 1.08005 * 125.43342 * 180.12304 * 10 9 8 34 34 H 1.09000 * 109.46867 * 30.00878 * 13 12 11 35 35 H 1.08996 * 109.46976 * 150.00178 * 13 12 11 36 36 H 0.96999 * 119.99646 * 359.97438 * 15 14 13 37 37 H 0.97001 * 119.99548 * 179.97438 * 15 14 13 38 38 H 0.96996 * 119.99620 * 265.00312 * 17 2 1 39 39 H 0.97000 * 120.00654 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1735 -1.4239 2.1935 7 8 3.5691 -1.8760 3.1472 8 6 5.6424 -1.5293 2.1347 9 6 6.5257 -1.0474 1.0629 10 6 7.7733 -1.3611 1.4442 11 8 7.7262 -1.9882 2.6299 12 6 6.4659 -2.0997 3.0607 13 6 6.0289 -2.7461 4.3500 14 6 5.7659 -4.2110 4.1136 15 7 5.3619 -4.9961 5.1319 16 8 5.9189 -4.6837 3.0071 17 7 2.0183 -0.6907 -1.1962 18 6 2.1491 -0.0076 -2.3757 19 1 1.8920 1.0402 -2.4243 20 6 2.6122 -0.6619 -3.5090 21 7 2.7375 -0.0054 -4.6429 22 14 3.0577 -2.4740 -3.4248 23 1 1.8610 -3.2933 -3.7441 24 1 4.1333 -2.7655 -4.4064 25 1 3.5329 -2.8038 -2.0571 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6054 -1.7198 1.2952 30 1 1.7517 -0.1584 2.1370 31 1 3.9825 -0.4623 0.4318 32 1 6.2308 -0.5428 0.1547 33 1 8.6718 -1.1470 0.8843 34 1 6.8144 -2.6339 5.0972 35 1 5.1174 -2.2663 4.7063 36 1 5.2406 -4.6182 6.0169 37 1 5.1923 -5.9389 4.9795 38 1 2.2489 -1.6319 -1.1526 39 1 3.0615 -0.4625 -5.4348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752896422.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:12 Heat of formation + Delta-G solvation = -82.446952 kcal Electronic energy + Delta-G solvation = -23834.311830 eV Core-core repulsion = 20163.584306 eV Total energy + Delta-G solvation = -3670.727524 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.61370 -40.58631 -40.35723 -38.05724 -35.29005 -34.78052 -34.17876 -33.63149 -32.89115 -31.20348 -28.78551 -27.26812 -25.42689 -24.07880 -22.55774 -21.86819 -21.68619 -20.74041 -19.80044 -19.04703 -18.27985 -17.95808 -17.13699 -17.01813 -16.84536 -16.76605 -16.20594 -16.05335 -15.70630 -15.33233 -14.85823 -14.74610 -14.52758 -14.24836 -13.96719 -13.80443 -13.72262 -13.46528 -13.26006 -12.89914 -12.74927 -12.53868 -12.15508 -11.81493 -11.68982 -11.28937 -11.14122 -11.01162 -10.86442 -10.71278 -10.09875 -9.61852 -9.36161 -8.02764 -5.35370 0.23426 1.09079 1.35285 1.38515 1.43069 1.55913 1.73042 2.22135 2.30056 2.45295 2.68876 3.30108 3.41430 3.53769 3.74146 3.83878 3.93791 4.01621 4.17839 4.32615 4.38791 4.58629 4.59971 4.68288 4.73637 4.85543 4.96696 5.00940 5.22918 5.30251 5.37471 5.56399 5.79250 5.84365 5.96588 6.21180 6.39392 6.51885 7.06454 7.14177 7.29125 7.82155 8.00058 9.18530 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.004540 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.718552 B = 6166.416125 C = 6736.559821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 H 0.062 0.938 4 C 0.122 3.878 5 N -0.710 5.710 6 C 0.584 3.416 7 O -0.574 6.574 8 C -0.254 4.254 9 C -0.211 4.211 10 C -0.019 4.019 11 O -0.173 6.173 12 C 0.079 3.921 13 C -0.066 4.066 14 C 0.521 3.479 15 N -0.830 5.830 16 O -0.594 6.594 17 N -0.750 5.750 18 C -0.220 4.220 19 H 0.067 0.933 20 C -0.051 4.051 21 N -0.979 5.979 22 Si 0.940 3.060 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.263 1.263 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.408 0.592 32 H 0.163 0.837 33 H 0.251 0.749 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.422 0.578 37 H 0.409 0.591 38 H 0.361 0.639 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.644 -4.370 24.021 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.080 0.920 4 C -0.002 4.002 5 N -0.360 5.360 6 C 0.373 3.627 7 O -0.457 6.457 8 C -0.259 4.259 9 C -0.230 4.230 10 C -0.084 4.084 11 O -0.069 6.069 12 C 0.026 3.974 13 C -0.105 4.105 14 C 0.307 3.693 15 N -0.394 5.394 16 O -0.475 6.475 17 N -0.394 5.394 18 C -0.351 4.351 19 H 0.085 0.915 20 C -0.243 4.243 21 N -0.630 5.630 22 Si 0.769 3.231 23 H -0.212 1.212 24 H -0.224 1.224 25 H -0.188 1.188 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.244 0.756 32 H 0.181 0.819 33 H 0.267 0.733 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.254 0.746 37 H 0.241 0.759 38 H 0.194 0.806 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.578 -4.717 23.950 25.874 hybrid contribution 0.045 -0.996 -1.145 1.518 sum 8.623 -5.713 22.806 25.042 Atomic orbital electron populations 1.22205 0.95977 1.01671 1.01666 1.20688 0.94000 0.95758 0.84116 0.91985 1.21687 0.79012 1.00881 0.98650 1.45840 1.08370 1.58750 1.23083 1.17445 0.86033 0.77084 0.82165 1.90642 1.70225 1.50399 1.34389 1.21281 0.93823 1.11664 0.99126 1.23151 0.92826 1.06326 1.00677 1.24618 1.00772 0.98020 0.84992 1.83727 1.28250 1.61116 1.33765 1.22123 0.81174 0.97425 0.96720 1.20445 1.06715 0.91236 0.92145 1.20550 0.75408 0.89059 0.84332 1.43536 1.69889 1.13399 1.12593 1.90787 1.53997 1.76705 1.25964 1.42866 1.79873 1.09529 1.07142 1.19010 1.34606 0.94643 0.86839 0.91520 1.25243 1.02656 1.00996 0.95406 1.69838 1.54807 1.37265 1.01054 0.85645 0.77543 0.82369 0.77497 1.21234 1.22358 1.18830 0.90276 0.93876 0.93145 0.92396 0.89059 0.75555 0.81945 0.73303 0.82480 0.83612 0.74601 0.75939 0.80570 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 9.49 71.98 0.68 -4.21 16 2 C 0.16 5.71 3.05 44.99 0.14 5.84 16 3 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 4 C 0.12 3.84 5.23 86.38 0.45 4.29 16 5 N -0.71 -23.75 5.38 -466.40 -2.51 -26.26 16 6 C 0.58 19.96 7.81 86.65 0.68 20.64 16 7 O -0.57 -20.53 14.85 -4.09 -0.06 -20.59 16 8 C -0.25 -7.92 6.31 -18.99 -0.12 -8.04 16 9 C -0.21 -5.76 10.60 23.65 0.25 -5.51 16 10 C -0.02 -0.41 12.03 66.89 0.80 0.39 16 11 O -0.17 -4.26 10.52 4.47 0.05 -4.21 16 12 C 0.08 2.13 5.87 25.26 0.15 2.28 16 13 C -0.07 -1.28 5.70 29.10 0.17 -1.11 16 14 C 0.52 12.30 8.09 87.65 0.71 13.00 16 15 N -0.83 -10.83 8.87 -173.53 -1.54 -12.37 16 16 O -0.59 -21.14 16.87 -3.05 -0.05 -21.19 16 17 N -0.75 -33.38 4.37 -322.94 -1.41 -34.79 16 18 C -0.22 -11.93 10.41 84.03 0.87 -11.05 16 19 H 0.07 3.92 8.06 -2.91 -0.02 3.89 16 20 C -0.05 -2.94 5.50 84.86 0.47 -2.47 16 21 N -0.98 -61.47 13.97 21.65 0.30 -61.17 16 22 Si 0.94 46.42 27.73 68.60 1.90 48.32 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 24 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 25 H -0.26 -12.29 6.52 99.48 0.65 -11.64 16 26 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.41 14.00 7.31 -92.70 -0.68 13.32 16 32 H 0.16 4.26 7.74 -2.91 -0.02 4.24 16 33 H 0.25 3.00 8.06 -2.91 -0.02 2.97 16 34 H 0.16 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.15 2.75 6.49 -2.39 -0.02 2.73 16 36 H 0.42 2.05 8.83 -92.71 -0.82 1.23 16 37 H 0.41 4.89 8.93 -92.71 -0.83 4.06 16 38 H 0.36 16.36 5.66 -92.71 -0.52 15.84 16 39 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -81.44 339.72 0.15 -81.29 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: -1.78 Total: 36.91 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 5.25 Total: 14.06 kcal Atomic # 7 Polarization: -129.43 SS G_CDS: -5.16 Total: -134.58 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -0.07 Total: -46.00 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.90 Total: 48.32 kcal Total: -81.44 0.15 -81.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752896422.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.157 kcal (2) G-P(sol) polarization free energy of solvation -81.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds