Wall clock time and date at job start Tue Mar 31 2020 03:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36191 * 126.46877 * 2 1 4 4 N 1.30382 * 108.68362 * 180.26001 * 3 2 1 5 5 C 1.34237 * 109.40458 * 359.56750 * 4 3 2 6 6 N 1.48082 * 125.94403 * 180.19636 * 5 4 3 7 7 O 1.21810 * 119.99660 * 185.34911 * 6 5 4 8 8 O 1.21799 * 120.00334 * 5.34823 * 6 5 4 9 9 C 1.35411 * 108.10611 * 0.42821 * 5 4 3 10 10 N 1.39574 * 126.63483 * 179.72181 * 9 5 4 11 11 C 1.46957 * 111.00250 * 237.64254 * 10 9 5 12 12 C 1.53048 * 109.36742 * 176.81164 * 11 10 9 13 13 N 1.46958 * 109.36476 * 58.39590 * 12 11 10 14 14 C 1.46903 * 111.00227 * 176.81604 * 13 12 11 15 15 C 1.50708 * 109.47075 * 59.32964 * 14 13 12 16 16 H 1.07996 * 119.99881 * 355.22849 * 15 14 13 17 17 C 1.37873 * 120.00030 * 175.22582 * 15 14 13 18 18 N 1.31523 * 119.99921 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00159 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47245 * 90.00128 * 19 17 15 21 21 H 1.48501 * 109.47370 * 210.00105 * 19 17 15 22 22 H 1.48497 * 109.46982 * 329.99940 * 19 17 15 23 23 C 1.46958 * 110.88185 * 300.68103 * 13 12 11 24 24 C 1.46958 * 111.00018 * 113.83764 * 10 9 5 25 25 H 1.09004 * 109.46789 * 84.85341 * 1 2 3 26 26 H 1.09001 * 109.47712 * 204.85506 * 1 2 3 27 27 H 1.09000 * 109.47319 * 324.86055 * 1 2 3 28 28 H 1.08004 * 125.65502 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.48731 * 296.77683 * 11 10 9 30 30 H 1.08999 * 109.49131 * 56.83774 * 11 10 9 31 31 H 1.09004 * 109.48477 * 298.43190 * 12 11 10 32 32 H 1.08997 * 109.50834 * 178.37785 * 12 11 10 33 33 H 1.08992 * 109.47815 * 179.33284 * 14 13 12 34 34 H 1.08998 * 109.46829 * 299.33578 * 14 13 12 35 35 H 0.96991 * 119.99820 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.49113 * 299.35308 * 23 13 12 37 37 H 1.08999 * 109.49004 * 179.29061 * 23 13 12 38 38 H 1.08996 * 109.48873 * 303.15776 * 24 10 9 39 39 H 1.08994 * 109.48893 * 63.20702 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2745 1.0952 0.0000 4 7 3.5160 0.6970 -0.0056 5 6 3.5539 -0.6448 0.0002 6 7 4.7769 -1.4798 0.0008 7 8 4.6874 -2.6911 -0.0920 8 8 5.8723 -0.9555 0.0940 9 6 2.2793 -1.1019 0.0002 10 7 1.8734 -2.4373 -0.0001 11 6 1.0175 -2.7274 -1.1590 12 6 0.6601 -4.2155 -1.1662 13 7 -0.0234 -4.5585 0.0887 14 6 -0.4506 -5.9641 0.0885 15 6 0.7531 -6.8549 -0.0809 16 1 1.7262 -6.4203 -0.2557 17 6 0.6121 -8.2247 -0.0127 18 7 -0.5730 -8.7540 0.1998 19 14 2.1042 -9.3289 -0.2219 20 1 2.7268 -9.5761 1.1034 21 1 1.6836 -10.6214 -0.8200 22 1 3.0884 -8.6669 -1.1154 23 6 0.8325 -4.2685 1.2476 24 6 1.1899 -2.7803 1.2548 25 1 -0.3633 0.0922 -1.0236 26 1 -0.3634 -0.9324 0.4319 27 1 -0.3634 0.8404 0.5915 28 1 1.9429 2.1231 -0.0004 29 1 0.1051 -2.1346 -1.0947 30 1 1.5503 -2.4769 -2.0763 31 1 1.5706 -4.8077 -1.2580 32 1 0.0018 -4.4277 -2.0086 33 1 -0.9430 -6.1944 1.0331 34 1 -1.1457 -6.1323 -0.7341 35 1 -0.6722 -9.7176 0.2481 36 1 1.7449 -4.8613 1.1833 37 1 0.2997 -4.5190 2.1650 38 1 1.8483 -2.5685 2.0972 39 1 0.2796 -2.1879 1.3467 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029821751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:17 Heat of formation + Delta-G solvation = 70.470771 kcal Electronic energy + Delta-G solvation = -24753.445545 eV Core-core repulsion = 21121.641783 eV Total energy + Delta-G solvation = -3631.803763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.04093 -42.67401 -40.33918 -37.55683 -36.98088 -35.33249 -34.45683 -32.05895 -31.46812 -29.64942 -28.66335 -26.92583 -26.30214 -24.68990 -23.79131 -22.90964 -22.15936 -20.90312 -19.96665 -19.50155 -18.63791 -18.61922 -17.96959 -17.10626 -16.90928 -16.44847 -16.13919 -16.01864 -15.87310 -15.62036 -14.97113 -14.70646 -14.08296 -13.86434 -13.68670 -13.62412 -13.03964 -12.83856 -12.63150 -12.59149 -12.43318 -12.40665 -12.27963 -12.20329 -11.94877 -11.85341 -11.80506 -11.50759 -11.14480 -10.59820 -10.23628 -9.94759 -9.12053 -8.17174 -6.33768 -0.93010 0.19272 0.47966 1.33867 1.36262 1.38778 1.48870 1.49940 2.21310 2.38107 3.09812 3.18594 3.25937 3.52514 3.57632 3.76411 3.92656 4.08248 4.16425 4.25778 4.27369 4.30800 4.52634 4.59279 4.65196 4.69900 4.89252 5.04285 5.08809 5.21327 5.22351 5.35470 5.51418 5.52569 5.74506 5.83453 6.00350 6.17273 6.21763 6.39742 6.71704 6.86063 7.37903 8.85790 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.019924 B = 0.004689 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.969556 B = 5970.039471 C = 7035.757192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.465 5.465 3 C 0.261 3.739 4 N -0.488 5.488 5 C 0.027 3.973 6 N 0.069 4.931 7 O -0.161 6.161 8 O -0.188 6.188 9 C 0.274 3.726 10 N -0.472 5.472 11 C 0.068 3.932 12 C 0.064 3.936 13 N -0.530 5.530 14 C 0.201 3.799 15 C -0.555 4.555 16 H 0.053 0.947 17 C 0.019 3.981 18 N -0.923 5.923 19 Si 0.946 3.054 20 H -0.276 1.276 21 H -0.279 1.279 22 H -0.273 1.273 23 C 0.065 3.935 24 C 0.070 3.930 25 H 0.111 0.889 26 H 0.088 0.912 27 H 0.141 0.859 28 H 0.288 0.712 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.023 0.977 32 H 0.081 0.919 33 H 0.013 0.987 34 H 0.012 0.988 35 H 0.265 0.735 36 H 0.023 0.977 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 22.828 -0.235 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.151 5.151 3 C -0.025 4.025 4 N -0.208 5.208 5 C -0.183 4.183 6 N 0.583 4.417 7 O -0.374 6.374 8 O -0.398 6.398 9 C 0.056 3.944 10 N -0.197 5.197 11 C -0.058 4.058 12 C -0.065 4.065 13 N -0.253 5.253 14 C 0.075 3.925 15 C -0.594 4.594 16 H 0.071 0.929 17 C -0.180 4.180 18 N -0.563 5.563 19 Si 0.772 3.228 20 H -0.202 1.202 21 H -0.205 1.205 22 H -0.198 1.198 23 C -0.064 4.064 24 C -0.055 4.055 25 H 0.129 0.871 26 H 0.107 0.893 27 H 0.160 0.840 28 H 0.304 0.696 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.032 0.968 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.402 23.506 -0.224 23.752 hybrid contribution 0.751 -2.143 -0.087 2.273 sum -2.650 21.363 -0.311 21.529 Atomic orbital electron populations 1.22989 0.71598 1.07428 1.07085 1.46949 1.10452 1.05839 1.51829 1.26449 0.81420 0.95533 0.99098 1.69737 1.23705 1.06761 1.20581 1.20273 0.83071 0.90645 1.24303 1.42557 1.01274 1.00806 0.97030 1.94658 1.93629 0.95331 1.53769 1.94494 1.14255 1.76454 1.54558 1.19231 0.89196 0.85461 1.00552 1.60158 1.44512 1.09266 1.05719 1.22404 0.95107 0.96929 0.91326 1.21944 0.97488 0.93613 0.93451 1.62719 1.38144 1.22532 1.01954 1.19399 0.94180 0.82904 0.96035 1.21992 0.95607 0.92417 1.49425 0.92932 1.25643 0.98076 0.99633 0.94684 1.70028 1.23829 1.12133 1.50269 0.85734 0.80108 0.78495 0.78459 1.20190 1.20458 1.19824 1.21919 0.95889 0.93685 0.94869 1.22365 0.97334 0.96623 0.89202 0.87087 0.89332 0.84042 0.69647 0.90300 0.89896 0.95818 0.90036 0.96833 0.97027 0.92613 0.95883 0.90206 0.90207 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.20 9.53 127.77 1.22 1.42 16 2 N -0.46 -6.14 3.19 -548.30 -1.75 -7.89 16 3 C 0.26 3.14 12.61 179.93 2.27 5.41 16 4 N -0.49 -12.13 11.22 -189.47 -2.13 -14.25 16 5 C 0.03 0.83 8.04 128.27 1.03 1.86 16 6 N 0.07 2.63 4.46 -50.20 -0.22 2.41 16 7 O -0.16 -6.62 18.33 18.87 0.35 -6.27 16 8 O -0.19 -7.40 19.24 18.89 0.36 -7.04 16 9 C 0.27 6.68 5.46 130.57 0.71 7.40 16 10 N -0.47 -13.23 3.92 -700.15 -2.74 -15.97 16 11 C 0.07 1.75 5.32 86.31 0.46 2.21 16 12 C 0.06 2.24 5.24 86.31 0.45 2.69 16 13 N -0.53 -20.22 4.92 -900.26 -4.43 -24.65 16 14 C 0.20 9.90 5.14 85.56 0.44 10.34 16 15 C -0.56 -30.17 7.67 25.60 0.20 -29.97 16 16 H 0.05 2.92 5.81 -2.91 -0.02 2.91 16 17 C 0.02 1.08 5.46 84.65 0.46 1.55 16 18 N -0.92 -53.67 13.29 21.45 0.28 -53.38 16 19 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 23 C 0.07 2.32 5.32 86.31 0.46 2.78 16 24 C 0.07 1.86 5.39 86.31 0.46 2.32 16 25 H 0.11 0.15 8.10 -2.38 -0.02 0.13 16 26 H 0.09 0.70 4.57 -2.39 -0.01 0.69 16 27 H 0.14 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.29 -0.37 8.06 -2.91 -0.02 -0.39 16 29 H 0.08 1.50 5.69 -2.39 -0.01 1.49 16 30 H 0.08 2.07 8.13 -2.39 -0.02 2.05 16 31 H 0.02 1.01 6.46 -2.38 -0.02 0.99 16 32 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.01 0.72 8.12 -2.39 -0.02 0.70 16 34 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.02 0.99 6.95 -2.39 -0.02 0.97 16 37 H 0.08 2.77 8.13 -2.39 -0.02 2.75 16 38 H 0.08 2.09 8.13 -2.39 -0.02 2.07 16 39 H 0.08 1.55 5.56 -2.39 -0.01 1.54 16 Total: -1.00 -77.15 321.03 1.01 -76.14 By element: Atomic # 1 Polarization: -4.86 SS G_CDS: 1.08 Total: -3.77 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 8.17 Total: 8.01 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -10.98 Total: -113.74 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.71 Total: -13.31 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -77.15 1.01 -76.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029821751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.614 kcal (2) G-P(sol) polarization free energy of solvation -77.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds