Wall clock time and date at job start Tue Mar 31 2020 03:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37099 * 119.99670 * 2 1 4 4 H 1.08006 * 120.00176 * 202.41263 * 3 2 1 5 5 C 1.38946 * 120.00262 * 22.41635 * 3 2 1 6 6 N 1.31409 * 120.00174 * 11.58812 * 5 3 2 7 7 Si 1.86802 * 120.00010 * 191.59218 * 5 3 2 8 8 H 1.48503 * 109.47111 * 60.00075 * 7 5 3 9 9 H 1.48504 * 109.47118 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47197 * 299.99388 * 7 5 3 11 11 C 1.34770 * 120.00497 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00519 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99864 * 359.97438 * 11 2 1 14 14 C 1.50692 * 109.47267 * 180.02562 * 13 11 2 15 15 C 1.38320 * 119.87932 * 90.00008 * 14 13 11 16 16 C 1.38018 * 120.12358 * 179.97438 * 15 14 13 17 17 C 1.39336 * 119.87718 * 0.02562 * 16 15 14 18 18 C 1.48393 * 120.12278 * 179.97438 * 17 16 15 19 19 C 1.39336 * 120.12278 * 180.02562 * 18 17 16 20 20 C 1.38019 * 119.87739 * 180.02562 * 19 18 17 21 21 C 1.38320 * 120.12337 * 0.02562 * 20 19 18 22 22 C 1.38323 * 120.24152 * 0.25358 * 21 20 19 23 23 C 1.38017 * 120.12151 * 359.48552 * 22 21 20 24 24 C 1.39337 * 119.75734 * 0.24958 * 17 16 15 25 25 C 1.38013 * 119.87922 * 359.49577 * 24 17 16 26 26 H 1.08997 * 109.46649 * 272.15236 * 1 2 3 27 27 H 1.08998 * 109.47281 * 32.14920 * 1 2 3 28 28 H 1.09000 * 109.47097 * 152.15854 * 1 2 3 29 29 H 0.96992 * 120.00274 * 180.02562 * 6 5 3 30 30 H 1.09005 * 109.46842 * 60.00253 * 13 11 2 31 31 H 1.09001 * 109.46880 * 300.00725 * 13 11 2 32 32 H 1.08001 * 119.93939 * 0.02562 * 15 14 13 33 33 H 1.07998 * 120.06356 * 179.97438 * 16 15 14 34 34 H 1.07998 * 120.05925 * 359.97438 * 19 18 17 35 35 H 1.08001 * 119.93701 * 180.02562 * 20 19 18 36 36 H 1.07992 * 119.88115 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.94305 * 179.74692 * 22 21 20 38 38 H 1.08004 * 120.06254 * 180.23119 * 23 22 21 39 39 H 1.08002 * 120.06010 * 179.74967 * 24 17 16 40 40 H 1.07998 * 119.94656 * 180.25234 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1693 1.2228 -0.3566 5 6 1.5344 2.3452 0.4589 6 7 0.3896 2.2707 1.0997 7 14 2.3335 4.0078 0.1646 8 1 2.4813 4.2346 -1.2956 9 1 1.4824 5.0762 0.7473 10 1 3.6718 4.0346 0.8077 11 6 2.1389 -1.1671 -0.0005 12 8 3.3519 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 6 2.3648 -3.6176 -0.0005 15 6 2.8126 -4.1414 1.1988 16 6 3.7091 -5.1907 1.2047 17 6 4.1635 -5.7222 -0.0005 18 6 5.1278 -6.8500 -0.0005 19 6 5.5827 -7.3811 -1.2058 20 6 6.4792 -8.4305 -1.1999 21 6 6.9258 -8.9553 -0.0005 22 6 6.4731 -8.4357 1.1988 23 6 5.5807 -7.3828 1.2047 24 6 3.7135 -5.1869 -1.2057 25 6 2.8130 -4.1411 -1.1999 26 1 -0.3632 0.0386 1.0269 27 1 -0.3634 0.8701 -0.5468 28 1 -0.3633 -0.9087 -0.4799 29 1 -0.0406 3.0789 1.4197 30 1 0.7585 -2.5298 -0.8904 31 1 0.7591 -2.5302 0.8896 32 1 2.4594 -3.7289 2.1324 33 1 4.0584 -5.5986 2.1417 34 1 5.2337 -6.9730 -2.1427 35 1 6.8327 -8.8426 -2.1335 36 1 7.6269 -9.7766 -0.0005 37 1 6.8219 -8.8518 2.1324 38 1 5.2308 -6.9754 2.1417 39 1 4.0657 -5.5925 -2.1427 40 1 2.4604 -3.7281 -2.1335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060297237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:03 Heat of formation + Delta-G solvation = 20.321481 kcal Electronic energy + Delta-G solvation = -21968.490208 eV Core-core repulsion = 18713.068321 eV Total energy + Delta-G solvation = -3255.421887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -39.87603 -38.79040 -37.76597 -34.69019 -33.26420 -31.63769 -31.44905 -30.38636 -30.22882 -27.10381 -25.99001 -24.25215 -23.46244 -22.70715 -21.36845 -20.60686 -18.86387 -17.53082 -16.84965 -16.01691 -15.91906 -15.49014 -15.22835 -14.62287 -14.38669 -14.21941 -13.94685 -13.77977 -13.74486 -13.28077 -12.97320 -12.94128 -12.46184 -12.09956 -11.90698 -11.48580 -11.44606 -11.39309 -11.19414 -11.06648 -10.92089 -10.75852 -10.50110 -10.39437 -10.19708 -9.52377 -9.06236 -9.00609 -8.65340 -8.40127 -7.76135 -7.66224 -6.29387 -3.85954 0.75766 1.29607 1.71116 2.02805 3.19838 3.24988 3.29266 3.65255 3.92008 4.12321 4.24036 4.63241 4.69157 4.83613 4.92094 4.99407 5.10959 5.18968 5.20710 5.27313 5.33948 5.34269 5.65349 5.69601 5.84552 5.90024 5.90802 5.97267 6.01440 6.18931 6.28761 6.31234 6.37529 6.39989 6.42839 6.65931 6.84574 6.88013 6.89569 6.97692 7.23067 7.25016 7.58068 8.14945 8.50928 9.21328 9.44800 10.01203 10.74265 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.032981 B = 0.002762 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.780120 B =10135.562863 C =10329.494386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.449 5.449 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.927 3.073 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.450 3.550 12 O -0.582 6.582 13 C -0.100 4.100 14 C -0.034 4.034 15 C -0.105 4.105 16 C -0.106 4.106 17 C -0.068 4.068 18 C -0.029 4.029 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.129 4.129 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.106 4.106 25 C -0.107 4.107 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.267 0.733 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 -18.840 -2.080 19.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.169 5.169 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.525 5.525 7 Si 0.753 3.247 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.237 3.763 12 O -0.466 6.466 13 C -0.140 4.140 14 C -0.034 4.034 15 C -0.123 4.123 16 C -0.124 4.124 17 C -0.068 4.068 18 C -0.029 4.029 19 C -0.134 4.134 20 C -0.136 4.136 21 C -0.147 4.147 22 C -0.136 4.136 23 C -0.134 4.134 24 C -0.124 4.124 25 C -0.125 4.125 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.126 -18.664 -1.992 19.218 hybrid contribution 0.153 1.027 -0.011 1.039 sum 4.279 -17.637 -2.003 18.259 Atomic orbital electron populations 1.21514 0.81174 0.98783 1.01717 1.43593 1.05498 1.04713 1.63062 1.19607 0.99452 0.83851 1.40346 0.88503 1.25328 0.96543 1.00027 0.95446 1.69983 1.17394 1.29318 1.35811 0.85992 0.79022 0.80919 0.78727 1.19958 1.20961 1.19816 1.19875 0.88051 0.84369 0.83988 1.90544 1.13829 1.86999 1.55258 1.20700 0.97233 0.92403 1.03680 1.19569 0.96371 0.94333 0.93153 1.20925 0.97563 0.96020 0.97824 1.21082 0.97532 0.96780 0.96991 1.18642 0.98049 0.96324 0.93741 1.18881 0.95938 0.94768 0.93336 1.21267 0.97776 0.96711 0.97659 1.21072 0.97689 0.96766 0.98075 1.21158 1.00519 1.00413 0.92649 1.21076 0.97691 0.96738 0.98083 1.21276 0.97795 0.96644 0.97681 1.21069 0.97553 0.96833 0.96972 1.20901 0.97658 0.96194 0.97718 0.92403 0.91303 0.95520 0.92261 0.89482 0.89291 0.86015 0.86144 0.85713 0.86083 0.86302 0.86073 0.85691 0.86170 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.47 8.52 59.85 0.51 2.98 16 2 N -0.45 -11.56 3.02 -122.19 -0.37 -11.93 16 3 C -0.30 -8.58 9.29 -14.93 -0.14 -8.72 16 4 H 0.10 2.87 7.41 -52.48 -0.39 2.48 16 5 C 0.03 0.78 5.11 -17.47 -0.09 0.69 16 6 N -0.89 -23.66 10.62 55.50 0.59 -23.07 16 7 Si 0.93 20.98 29.57 -169.99 -5.03 15.95 16 8 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 C 0.45 10.95 7.62 -10.99 -0.08 10.87 16 12 O -0.58 -16.35 15.73 5.55 0.09 -16.27 16 13 C -0.10 -1.82 4.35 -29.04 -0.13 -1.95 16 14 C -0.03 -0.59 4.38 -104.56 -0.46 -1.05 16 15 C -0.11 -1.73 9.68 -39.63 -0.38 -2.11 16 16 C -0.11 -1.56 9.43 -39.25 -0.37 -1.93 16 17 C -0.07 -0.98 5.88 -104.90 -0.62 -1.60 16 18 C -0.03 -0.38 5.88 -104.90 -0.62 -0.99 16 19 C -0.12 -1.33 9.43 -39.25 -0.37 -1.70 16 20 C -0.12 -1.16 10.03 -39.63 -0.40 -1.56 16 21 C -0.13 -1.21 10.04 -39.52 -0.40 -1.61 16 22 C -0.12 -1.16 10.03 -39.63 -0.40 -1.56 16 23 C -0.12 -1.33 9.43 -39.25 -0.37 -1.70 16 24 C -0.11 -1.55 9.43 -39.26 -0.37 -1.92 16 25 C -0.11 -1.72 9.68 -39.63 -0.38 -2.10 16 26 H 0.06 1.32 7.54 -51.93 -0.39 0.93 16 27 H 0.07 1.60 7.06 -51.93 -0.37 1.24 16 28 H 0.03 0.47 6.36 -51.93 -0.33 0.14 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.09 1.39 7.35 -51.93 -0.38 1.00 16 31 H 0.09 1.48 8.05 -51.93 -0.42 1.06 16 32 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.12 1.47 6.21 -52.49 -0.33 1.14 16 34 H 0.13 1.25 6.21 -52.49 -0.33 0.92 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 1.27 6.21 -52.48 -0.33 0.95 16 39 H 0.12 1.43 6.21 -52.49 -0.33 1.11 16 40 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 335.65 15.07 5.06 5.06 Total: -1.00 -32.50 335.65 -9.55 -42.05 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.83 Total: 4.18 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -5.06 Total: -15.97 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.22 Total: -35.00 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.09 Total: -16.27 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.50 -9.55 -42.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060297237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.372 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds