Wall clock time and date at job start Tue Mar 31 2020 04:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46881 * 113.36769 * 3 2 1 5 5 C 1.37094 * 119.99713 * 264.00846 * 4 3 2 6 6 H 1.07995 * 119.99907 * 195.97960 * 5 4 3 7 7 C 1.38956 * 120.00263 * 15.98177 * 5 4 3 8 8 N 1.31409 * 119.99479 * 21.62899 * 7 5 4 9 9 Si 1.86800 * 119.99996 * 201.63369 * 7 5 4 10 10 H 1.48494 * 109.47129 * 59.99788 * 9 7 5 11 11 H 1.48502 * 109.46976 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.46936 * 299.99698 * 9 7 5 13 13 C 1.34777 * 120.00008 * 84.01313 * 4 3 2 14 14 O 1.21294 * 119.99704 * 185.37195 * 13 4 3 15 15 C 1.50697 * 120.00115 * 5.36478 * 13 4 3 16 16 H 1.09006 * 109.47295 * 317.21062 * 15 13 4 17 17 C 1.52992 * 109.47106 * 77.21323 * 15 13 4 18 18 O 1.42900 * 109.47006 * 197.21578 * 15 13 4 19 19 C 1.42898 * 114.00114 * 149.99775 * 18 15 13 20 20 C 1.53002 * 109.47522 * 179.97438 * 19 18 15 21 21 H 1.09002 * 109.47508 * 54.97349 * 20 19 18 22 22 C 1.53082 * 109.48476 * 175.00013 * 20 19 18 23 23 C 1.53174 * 109.16581 * 177.59172 * 22 20 19 24 24 C 1.53174 * 109.03858 * 303.02195 * 23 22 20 25 25 C 1.53094 * 109.16284 * 56.97683 * 24 23 22 26 26 O 1.42901 * 109.41795 * 302.39533 * 25 24 23 27 27 H 4.40641 * 5.51343 * 180.02562 * 4 1 2 28 28 H 1.08996 * 109.47317 * 353.36419 * 3 2 1 29 29 H 1.09003 * 109.46868 * 233.36041 * 3 2 1 30 30 H 0.97007 * 119.99707 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.47192 * 177.77963 * 17 15 13 32 32 H 1.08998 * 109.47286 * 297.77885 * 17 15 13 33 33 H 1.08997 * 109.47394 * 57.78179 * 17 15 13 34 34 H 1.08995 * 109.47368 * 299.99989 * 19 18 15 35 35 H 1.09001 * 109.47164 * 59.99835 * 19 18 15 36 36 H 1.09005 * 109.52320 * 297.50221 * 22 20 19 37 37 H 1.09006 * 109.52228 * 57.62790 * 22 20 19 38 38 H 1.09001 * 109.54095 * 62.88891 * 23 22 20 39 39 H 1.08997 * 109.54784 * 183.06364 * 23 22 20 40 40 H 1.09003 * 109.52776 * 176.88323 * 24 23 22 41 41 H 1.09004 * 109.52434 * 297.00876 * 24 23 22 42 42 H 1.08998 * 109.47741 * 62.37668 * 25 24 23 43 43 H 1.09001 * 109.48471 * 182.40652 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1341 0.5487 -1.2680 5 6 3.4798 -0.2951 -2.2916 6 1 4.0723 0.0713 -3.1168 7 6 3.0677 -1.6220 -2.2675 8 7 2.0332 -1.9754 -1.5384 9 14 3.9844 -2.9031 -3.2714 10 1 5.4005 -2.9591 -2.8279 11 1 3.3516 -4.2320 -3.0745 12 1 3.9302 -2.5367 -4.7094 13 6 3.2433 1.8825 -1.4281 14 8 3.5536 2.3403 -2.5076 15 6 2.9798 2.8050 -0.2659 16 1 2.0957 2.4658 0.2740 17 6 4.1862 2.7974 0.6749 18 8 2.7620 4.1315 -0.7506 19 6 1.8853 4.9116 0.0647 20 6 1.7262 6.3054 -0.5460 21 1 1.3922 6.2135 -1.5795 22 6 0.6920 7.0993 0.2562 23 6 0.5825 8.5127 -0.3241 24 6 1.9655 9.1706 -0.3014 25 6 2.9507 8.2967 -1.0821 26 8 2.9813 6.9877 -0.5097 27 1 -1.0500 0.0001 0.0003 28 1 3.0099 -1.0199 0.1187 29 1 3.0091 0.6141 0.8246 30 1 1.7457 -2.9018 -1.5213 31 1 4.0120 3.4944 1.4948 32 1 4.3284 1.7937 1.0754 33 1 5.0778 3.0988 0.1251 34 1 0.9114 4.4253 0.1195 35 1 2.3041 5.0002 1.0671 36 1 -0.2768 6.6036 0.1931 37 1 1.0049 7.1560 1.2988 38 1 0.2214 8.4582 -1.3511 39 1 -0.1122 9.1005 0.2759 40 1 1.9078 10.1562 -0.7634 41 1 2.3043 9.2711 0.7297 42 1 2.6326 8.2310 -2.1226 43 1 3.9461 8.7382 -1.0334 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281025509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:38 Heat of formation + Delta-G solvation = -64.111728 kcal Electronic energy + Delta-G solvation = -24412.159467 eV Core-core repulsion = 20845.767361 eV Total energy + Delta-G solvation = -3566.392105 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.57454 -38.93823 -36.96277 -35.03260 -33.70390 -32.55414 -32.00260 -31.29739 -30.29586 -26.96032 -26.44579 -25.12756 -24.22913 -22.87277 -22.05535 -20.40081 -19.10779 -17.91908 -16.87947 -16.55132 -16.46716 -16.11072 -15.55066 -15.05857 -14.70872 -14.58258 -14.48388 -14.10683 -13.88253 -13.63604 -13.15762 -12.81764 -12.67947 -12.44732 -12.33873 -11.95685 -11.72908 -11.55940 -11.42852 -11.40045 -11.27738 -10.98212 -10.90390 -10.63460 -10.52169 -10.33243 -10.28491 -9.45453 -9.37591 -9.35802 -9.25777 -8.88394 -8.21111 -7.85673 -6.31808 -3.82795 3.18897 3.26312 3.29130 3.53848 3.75434 3.85353 3.92074 4.02312 4.22648 4.62309 4.67638 4.70436 4.87552 5.00794 5.08357 5.12137 5.26802 5.33574 5.40295 5.42113 5.46647 5.51450 5.59982 5.63001 5.66654 5.72268 5.73727 5.79691 5.86377 5.94511 6.00370 6.13844 6.17328 6.28461 6.57458 6.75250 7.00597 7.26312 7.52837 7.58399 8.08175 8.46509 8.76873 9.16282 9.36769 9.93574 10.69435 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.026836 B = 0.003534 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.135984 B = 7920.921873 C = 8369.259072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.115 4.115 3 C 0.225 3.775 4 N -0.440 5.440 5 C -0.313 4.313 6 H 0.104 0.896 7 C 0.031 3.969 8 N -0.865 5.865 9 Si 0.923 3.077 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.456 3.544 14 O -0.562 6.562 15 C 0.077 3.923 16 H 0.070 0.930 17 C -0.167 4.167 18 O -0.347 6.347 19 C 0.067 3.933 20 C 0.094 3.906 21 H 0.068 0.932 22 C -0.148 4.148 23 C -0.121 4.121 24 C -0.157 4.157 25 C 0.059 3.941 26 O -0.366 6.366 27 H 0.200 0.800 28 H 0.114 0.886 29 H 0.064 0.936 30 H 0.268 0.732 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.994 14.421 8.553 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.117 4.117 3 C 0.102 3.898 4 N -0.161 5.161 5 C -0.440 4.440 6 H 0.122 0.878 7 C -0.173 4.173 8 N -0.503 5.503 9 Si 0.749 3.251 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.243 3.757 14 O -0.443 6.443 15 C 0.015 3.985 16 H 0.088 0.912 17 C -0.225 4.225 18 O -0.265 6.265 19 C -0.011 4.011 20 C 0.036 3.964 21 H 0.086 0.914 22 C -0.186 4.186 23 C -0.158 4.158 24 C -0.195 4.195 25 C -0.018 4.018 26 O -0.285 6.285 27 H 0.217 0.783 28 H 0.132 0.868 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.654 14.448 7.936 16.697 hybrid contribution -0.491 -0.796 -0.294 0.980 sum -3.145 13.652 7.642 15.958 Atomic orbital electron populations 1.24301 0.95392 1.05184 1.03081 1.23271 0.94445 0.96422 0.97565 1.18431 0.84231 1.01380 0.85774 1.43629 1.56555 1.03534 1.12348 1.19643 1.31135 0.89857 1.03330 0.87804 1.25262 0.95307 0.98587 0.98167 1.70088 1.20883 1.18528 1.40843 0.86054 0.79679 0.79182 0.80173 1.19872 1.21071 1.19861 1.19773 0.84480 0.82528 0.88932 1.90538 1.51373 1.75149 1.27251 1.21918 0.98120 0.83754 0.94664 0.91181 1.22227 0.99025 1.02253 0.98948 1.88089 1.66216 1.22930 1.49272 1.22528 0.94026 0.89908 0.94590 1.22056 0.84593 0.90280 0.99426 0.91444 1.22140 0.99658 0.96170 1.00662 1.21562 0.97077 0.95710 1.01498 1.22213 0.96033 0.99330 1.01881 1.22552 0.99857 0.83354 0.96029 1.88032 1.30933 1.27988 1.81572 0.78317 0.86786 0.91860 0.92116 0.92270 0.91045 0.91249 0.92056 0.92782 0.90582 0.90852 0.91677 0.91431 0.91071 0.91134 0.93202 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.37 19.25 29.55 0.57 -4.80 16 2 C -0.12 -2.59 10.89 -37.12 -0.40 -2.99 16 3 C 0.23 4.97 4.78 -6.83 -0.03 4.94 16 4 N -0.44 -11.30 2.60 -117.93 -0.31 -11.60 16 5 C -0.31 -8.71 9.33 -14.93 -0.14 -8.85 16 6 H 0.10 3.05 7.41 -52.49 -0.39 2.66 16 7 C 0.03 0.80 4.88 -17.47 -0.09 0.71 16 8 N -0.87 -22.68 9.45 55.50 0.52 -22.16 16 9 Si 0.92 20.56 29.61 -169.99 -5.03 15.52 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.46 11.67 6.83 -10.99 -0.08 11.59 16 14 O -0.56 -16.73 16.26 -13.75 -0.22 -16.96 16 15 C 0.08 1.55 2.29 -27.89 -0.06 1.49 16 16 H 0.07 1.32 6.27 -51.93 -0.33 0.99 16 17 C -0.17 -2.80 9.28 37.15 0.34 -2.45 16 18 O -0.35 -7.14 9.55 -59.29 -0.57 -7.70 16 19 C 0.07 1.02 5.41 37.16 0.20 1.22 16 20 C 0.09 1.30 2.93 -26.69 -0.08 1.23 16 21 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 22 C -0.15 -1.51 5.42 -26.60 -0.14 -1.65 16 23 C -0.12 -1.06 6.03 -26.55 -0.16 -1.22 16 24 C -0.16 -1.37 6.14 -26.59 -0.16 -1.54 16 25 C 0.06 0.66 6.84 37.21 0.25 0.91 16 26 O -0.37 -5.50 10.37 -40.01 -0.41 -5.91 16 27 H 0.20 3.31 7.80 -54.09 -0.42 2.89 16 28 H 0.11 2.64 6.32 -51.93 -0.33 2.31 16 29 H 0.06 1.16 4.92 -51.93 -0.26 0.90 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.06 0.83 7.83 -51.93 -0.41 0.42 16 32 H 0.07 1.10 6.29 -51.93 -0.33 0.78 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.05 0.75 7.83 -51.93 -0.41 0.34 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -33.61 351.94 -7.33 -40.95 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.64 Total: 3.97 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 0.02 Total: -1.41 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.22 Total: -33.76 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.20 Total: -30.57 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.61 -7.33 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281025509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.165 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds