Wall clock time and date at job start Tue Mar 31 2020 04:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46881 * 113.36769 * 3 2 1 5 5 C 1.37094 * 119.99713 * 264.00846 * 4 3 2 6 6 H 1.07995 * 119.99907 * 195.97960 * 5 4 3 7 7 C 1.38956 * 120.00263 * 15.98177 * 5 4 3 8 8 N 1.31409 * 119.99479 * 21.62899 * 7 5 4 9 9 Si 1.86800 * 119.99996 * 201.63369 * 7 5 4 10 10 H 1.48494 * 109.47129 * 59.99788 * 9 7 5 11 11 H 1.48502 * 109.46976 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.46936 * 299.99698 * 9 7 5 13 13 C 1.34777 * 120.00008 * 84.01313 * 4 3 2 14 14 O 1.21294 * 119.99704 * 185.37195 * 13 4 3 15 15 C 1.50697 * 120.00115 * 5.36478 * 13 4 3 16 16 H 1.09006 * 109.47295 * 317.21062 * 15 13 4 17 17 C 1.52992 * 109.47106 * 77.21323 * 15 13 4 18 18 O 1.42900 * 109.47006 * 197.21578 * 15 13 4 19 19 C 1.42898 * 114.00114 * 149.99775 * 18 15 13 20 20 C 1.53002 * 109.47522 * 179.97438 * 19 18 15 21 21 H 1.09002 * 109.47508 * 54.97349 * 20 19 18 22 22 C 1.53082 * 109.48476 * 175.00013 * 20 19 18 23 23 C 1.53174 * 109.16581 * 177.59172 * 22 20 19 24 24 C 1.53174 * 109.03858 * 303.02195 * 23 22 20 25 25 C 1.53094 * 109.16284 * 56.97683 * 24 23 22 26 26 O 1.42901 * 109.41795 * 302.39533 * 25 24 23 27 27 H 4.40641 * 5.51343 * 180.02562 * 4 1 2 28 28 H 1.08996 * 109.47317 * 353.36419 * 3 2 1 29 29 H 1.09003 * 109.46868 * 233.36041 * 3 2 1 30 30 H 0.97007 * 119.99707 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.47192 * 177.77963 * 17 15 13 32 32 H 1.08998 * 109.47286 * 297.77885 * 17 15 13 33 33 H 1.08997 * 109.47394 * 57.78179 * 17 15 13 34 34 H 1.08995 * 109.47368 * 299.99989 * 19 18 15 35 35 H 1.09001 * 109.47164 * 59.99835 * 19 18 15 36 36 H 1.09005 * 109.52320 * 297.50221 * 22 20 19 37 37 H 1.09006 * 109.52228 * 57.62790 * 22 20 19 38 38 H 1.09001 * 109.54095 * 62.88891 * 23 22 20 39 39 H 1.08997 * 109.54784 * 183.06364 * 23 22 20 40 40 H 1.09003 * 109.52776 * 176.88323 * 24 23 22 41 41 H 1.09004 * 109.52434 * 297.00876 * 24 23 22 42 42 H 1.08998 * 109.47741 * 62.37668 * 25 24 23 43 43 H 1.09001 * 109.48471 * 182.40652 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1341 0.5487 -1.2680 5 6 3.4798 -0.2951 -2.2916 6 1 4.0723 0.0713 -3.1168 7 6 3.0677 -1.6220 -2.2675 8 7 2.0332 -1.9754 -1.5384 9 14 3.9844 -2.9031 -3.2714 10 1 5.4005 -2.9591 -2.8279 11 1 3.3516 -4.2320 -3.0745 12 1 3.9302 -2.5367 -4.7094 13 6 3.2433 1.8825 -1.4281 14 8 3.5536 2.3403 -2.5076 15 6 2.9798 2.8050 -0.2659 16 1 2.0957 2.4658 0.2740 17 6 4.1862 2.7974 0.6749 18 8 2.7620 4.1315 -0.7506 19 6 1.8853 4.9116 0.0647 20 6 1.7262 6.3054 -0.5460 21 1 1.3922 6.2135 -1.5795 22 6 0.6920 7.0993 0.2562 23 6 0.5825 8.5127 -0.3241 24 6 1.9655 9.1706 -0.3014 25 6 2.9507 8.2967 -1.0821 26 8 2.9813 6.9877 -0.5097 27 1 -1.0500 0.0001 0.0003 28 1 3.0099 -1.0199 0.1187 29 1 3.0091 0.6141 0.8246 30 1 1.7457 -2.9018 -1.5213 31 1 4.0120 3.4944 1.4948 32 1 4.3284 1.7937 1.0754 33 1 5.0778 3.0988 0.1251 34 1 0.9114 4.4253 0.1195 35 1 2.3041 5.0002 1.0671 36 1 -0.2768 6.6036 0.1931 37 1 1.0049 7.1560 1.2988 38 1 0.2214 8.4582 -1.3511 39 1 -0.1122 9.1005 0.2759 40 1 1.9078 10.1562 -0.7634 41 1 2.3043 9.2711 0.7297 42 1 2.6326 8.2310 -2.1226 43 1 3.9461 8.7382 -1.0334 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281025509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:37 Heat of formation + Delta-G solvation = -84.852519 kcal Electronic energy + Delta-G solvation = -24413.058855 eV Core-core repulsion = 20845.767361 eV Total energy + Delta-G solvation = -3567.291494 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96240 -40.34433 -38.49310 -37.01633 -34.55063 -34.24742 -33.34969 -33.04430 -31.74087 -28.28354 -27.97327 -26.97796 -25.18187 -24.40315 -23.12889 -21.31162 -20.81759 -19.74224 -18.60713 -18.19639 -17.65204 -17.31679 -16.97896 -16.62458 -16.20083 -15.99413 -15.61292 -15.53416 -15.30642 -14.93285 -14.64362 -14.15926 -14.08611 -13.62411 -13.55478 -13.53653 -13.37368 -13.18473 -12.80068 -12.67791 -12.51572 -12.41240 -12.15752 -12.14948 -11.95558 -11.59191 -11.26928 -11.20285 -11.10243 -10.80559 -10.63685 -10.39382 -10.12885 -9.86378 -8.33693 -5.93562 1.37246 1.42745 1.52301 1.79071 2.07917 2.30657 2.33466 2.50991 2.79561 3.01703 3.30448 3.79746 3.81260 3.88770 3.92059 3.96223 4.02454 4.06205 4.11285 4.20013 4.33252 4.41163 4.48246 4.53361 4.63636 4.68864 4.75796 4.81969 4.87671 4.93480 4.97178 5.06291 5.11160 5.16705 5.20679 5.37855 5.40130 5.45796 5.94188 6.19806 6.32860 6.48682 7.10331 7.13374 7.37870 7.95974 8.64808 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.026836 B = 0.003534 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.135984 B = 7920.921873 C = 8369.259072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.161 4.161 3 C 0.227 3.773 4 N -0.445 5.445 5 C -0.356 4.356 6 H 0.072 0.928 7 C 0.006 3.994 8 N -0.870 5.870 9 Si 0.985 3.015 10 H -0.265 1.265 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.437 3.563 14 O -0.622 6.622 15 C 0.088 3.912 16 H 0.087 0.913 17 C -0.159 4.159 18 O -0.383 6.383 19 C 0.059 3.941 20 C 0.091 3.909 21 H 0.045 0.955 22 C -0.141 4.141 23 C -0.122 4.122 24 C -0.150 4.150 25 C 0.049 3.951 26 O -0.397 6.397 27 H 0.236 0.764 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.274 0.726 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 14.705 10.626 18.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.163 4.163 3 C 0.105 3.895 4 N -0.164 5.164 5 C -0.483 4.483 6 H 0.090 0.910 7 C -0.197 4.197 8 N -0.507 5.507 9 Si 0.809 3.191 10 H -0.190 1.190 11 H -0.194 1.194 12 H -0.207 1.207 13 C 0.227 3.773 14 O -0.508 6.508 15 C 0.027 3.973 16 H 0.105 0.895 17 C -0.217 4.217 18 O -0.302 6.302 19 C -0.018 4.018 20 C 0.034 3.966 21 H 0.063 0.937 22 C -0.178 4.178 23 C -0.159 4.159 24 C -0.187 4.187 25 C -0.028 4.028 26 O -0.316 6.316 27 H 0.252 0.748 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.999 14.721 10.062 18.274 hybrid contribution -0.152 -0.891 -0.968 1.324 sum -4.151 13.830 9.094 17.065 Atomic orbital electron populations 1.25206 0.96378 1.03244 1.01037 1.23519 0.95093 0.98241 0.99423 1.18520 0.84682 1.01156 0.85188 1.43827 1.55876 1.03685 1.13019 1.19556 1.33034 0.91453 1.04287 0.90984 1.25949 0.95496 0.99318 0.98977 1.70172 1.20712 1.19097 1.40676 0.85131 0.78913 0.77002 0.78064 1.19014 1.19432 1.20748 1.20831 0.83453 0.83134 0.89919 1.90479 1.54118 1.76268 1.29985 1.21783 1.00108 0.82919 0.92458 0.89494 1.22199 0.96630 1.04003 0.98863 1.88058 1.67623 1.23130 1.51394 1.22861 0.93895 0.90040 0.94964 1.22122 0.85354 0.90269 0.98893 0.93680 1.22106 0.98802 0.96518 1.00415 1.21611 0.97506 0.95064 1.01734 1.22167 0.95211 0.99608 1.01754 1.22786 1.01395 0.82515 0.96057 1.87973 1.31895 1.29768 1.81999 0.74794 0.88237 0.88161 0.91596 0.88775 0.89704 0.93071 0.90741 0.90834 0.89360 0.89947 0.91954 0.89175 0.89037 0.90759 0.93866 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.35 19.25 74.32 1.43 -7.92 16 2 C -0.16 -7.04 10.89 31.12 0.34 -6.70 16 3 C 0.23 9.94 4.78 84.57 0.40 10.35 16 4 N -0.45 -23.46 2.60 -645.41 -1.68 -25.14 16 5 C -0.36 -20.61 9.33 84.04 0.78 -19.83 16 6 H 0.07 4.53 7.41 -2.91 -0.02 4.50 16 7 C 0.01 0.33 4.88 84.93 0.41 0.75 16 8 N -0.87 -45.16 9.45 21.66 0.20 -44.96 16 9 Si 0.99 42.33 29.61 68.60 2.03 44.36 16 10 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 C 0.44 23.23 6.83 87.66 0.60 23.83 16 14 O -0.62 -39.39 16.26 15.38 0.25 -39.14 16 15 C 0.09 3.57 2.29 29.84 0.07 3.63 16 16 H 0.09 3.15 6.27 -2.38 -0.01 3.14 16 17 C -0.16 -5.17 9.28 71.98 0.67 -4.50 16 18 O -0.38 -15.99 9.55 -125.97 -1.20 -17.19 16 19 C 0.06 1.75 5.41 71.98 0.39 2.13 16 20 C 0.09 2.50 2.93 30.62 0.09 2.59 16 21 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 22 C -0.14 -2.57 5.42 30.68 0.17 -2.41 16 23 C -0.12 -1.85 6.03 30.71 0.19 -1.66 16 24 C -0.15 -2.32 6.14 30.68 0.19 -2.13 16 25 C 0.05 1.07 6.84 72.01 0.49 1.56 16 26 O -0.40 -11.90 10.37 -144.41 -1.50 -13.40 16 27 H 0.24 6.95 7.80 -4.42 -0.03 6.92 16 28 H 0.10 4.60 6.32 -2.39 -0.02 4.59 16 29 H 0.10 3.53 4.92 -2.39 -0.01 3.52 16 30 H 0.27 13.41 8.31 -92.70 -0.77 12.64 16 31 H 0.09 2.39 7.83 -2.38 -0.02 2.37 16 32 H 0.08 2.47 6.29 -2.39 -0.02 2.46 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 1.97 8.08 -2.39 -0.02 1.95 16 35 H 0.07 1.87 7.83 -2.39 -0.02 1.85 16 36 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -76.50 351.94 5.31 -71.19 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.99 Total: 24.59 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 6.22 Total: -0.30 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -1.48 Total: -70.10 kcal Atomic # 8 Polarization: -67.28 SS G_CDS: -2.45 Total: -69.73 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -76.50 5.31 -71.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281025509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.663 kcal (2) G-P(sol) polarization free energy of solvation -76.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds