Wall clock time and date at job start Tue Mar 31 2020 03:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 120.00196 * 2 1 4 4 N 1.46504 * 109.47179 * 122.66154 * 3 2 1 5 5 C 1.46499 * 119.99294 * 88.40695 * 4 3 2 6 6 C 1.50705 * 109.47347 * 83.32444 * 5 4 3 7 7 H 1.07996 * 119.99573 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99840 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99947 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99619 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47057 * 60.00053 * 10 8 6 12 12 H 1.48503 * 109.46711 * 179.97438 * 10 8 6 13 13 H 1.48490 * 109.47283 * 299.99791 * 10 8 6 14 14 C 1.34775 * 120.00019 * 268.40260 * 4 3 2 15 15 O 1.21276 * 120.00299 * 5.57865 * 14 4 3 16 16 C 1.50703 * 119.99832 * 185.57906 * 14 4 3 17 17 H 1.08998 * 110.53628 * 334.70568 * 16 14 4 18 18 O 1.45089 * 110.60211 * 211.69963 * 16 14 4 19 19 C 1.44676 * 109.62260 * 266.18494 * 18 16 14 20 20 C 1.52044 * 105.99467 * 3.42379 * 19 18 16 21 21 H 1.08995 * 110.27068 * 86.96684 * 20 19 18 22 22 C 1.51242 * 118.72251 * 214.98045 * 20 19 18 23 23 O 1.43974 * 106.42804 * 176.68751 * 22 20 19 24 24 C 1.42315 * 117.06971 * 302.63790 * 23 22 20 25 25 C 1.54015 * 112.18484 * 53.10323 * 24 23 22 26 26 C 1.51558 * 106.50701 * 305.89482 * 25 24 23 27 27 H 1.09002 * 110.76809 * 301.66789 * 26 25 24 28 28 H 1.07999 * 119.99985 * 354.75538 * 1 2 3 29 29 H 1.07999 * 119.99950 * 174.48914 * 1 2 3 30 30 H 1.08002 * 120.00281 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47340 * 242.66611 * 3 2 1 32 32 H 1.09004 * 109.46406 * 2.66468 * 3 2 1 33 33 H 1.09004 * 109.46136 * 203.31769 * 5 4 3 34 34 H 1.08991 * 109.47478 * 323.31431 * 5 4 3 35 35 H 0.97007 * 119.99580 * 180.02562 * 9 8 6 36 36 H 1.08998 * 110.14526 * 244.28868 * 19 18 16 37 37 H 1.09005 * 110.14565 * 122.55546 * 19 18 16 38 38 H 1.08999 * 110.05779 * 57.45013 * 22 20 19 39 39 H 1.09010 * 110.14076 * 295.95772 * 22 20 19 40 40 H 1.08994 * 108.94672 * 292.40385 * 24 23 22 41 41 H 1.09002 * 108.94056 * 173.79338 * 24 23 22 42 42 H 1.09007 * 110.04103 * 186.64408 * 25 24 23 43 43 H 1.08998 * 110.04535 * 65.14647 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9533 1.3553 1.1628 5 6 4.3116 0.8145 1.0695 6 6 5.2238 1.8495 0.4630 7 1 4.8310 2.8134 0.1755 8 6 6.5599 1.5656 0.2754 9 7 7.0384 0.3918 0.6261 10 14 7.6905 2.8482 -0.4771 11 1 7.6983 4.0631 0.3768 12 1 9.0677 2.3004 -0.5704 13 1 7.2045 3.2009 -1.8351 14 6 2.5222 1.8990 2.3182 15 8 1.3678 2.2545 2.4276 16 6 3.4746 2.0653 3.4743 17 1 4.2856 1.3400 3.4089 18 8 2.7718 1.9377 4.7372 19 6 2.3767 3.2474 5.2078 20 6 2.7948 4.2264 4.1222 21 1 2.0092 4.3165 3.3720 22 6 3.2772 5.6008 4.5295 23 8 3.6732 6.2691 3.3173 24 6 4.6697 5.6345 2.5238 25 6 4.3066 4.1751 2.1918 26 6 4.0284 3.4890 3.5143 27 1 4.8962 3.5492 4.1710 28 1 -0.5400 0.9314 0.0855 29 1 -0.5400 -0.9310 -0.0898 30 1 1.8500 -0.9353 0.0004 31 1 2.6539 1.3838 -0.9129 32 1 1.3561 2.1330 0.0478 33 1 4.6684 0.5550 2.0663 34 1 4.3055 -0.0768 0.4423 35 1 7.9785 0.1923 0.4943 36 1 2.8884 3.4810 6.1414 37 1 1.2968 3.2847 5.3514 38 1 4.1291 5.5133 5.2037 39 1 2.4720 6.1527 5.0147 40 1 5.6156 5.6493 3.0652 41 1 4.7879 6.1900 1.5934 42 1 5.1409 3.6882 1.6866 43 1 3.4180 4.1454 1.5613 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292295016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:28 Heat of formation + Delta-G solvation = -93.829408 kcal Electronic energy + Delta-G solvation = -26077.801748 eV Core-core repulsion = 22510.120987 eV Total energy + Delta-G solvation = -3567.680761 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84758 -38.56967 -37.20255 -35.34298 -33.71013 -32.79399 -32.23594 -31.45710 -28.69337 -27.52907 -25.87390 -25.16513 -23.22260 -23.02106 -21.54152 -20.36263 -19.53518 -18.28980 -16.92473 -16.79774 -15.99023 -15.94257 -15.68425 -15.14653 -14.99145 -14.78395 -14.43775 -14.24667 -13.86387 -13.71729 -13.13249 -12.95565 -12.68463 -12.60865 -12.32924 -11.93289 -11.66072 -11.36191 -11.25057 -11.00318 -10.96118 -10.95280 -10.84837 -10.68074 -10.35972 -10.31239 -10.04679 -9.85061 -9.62210 -9.27138 -9.16691 -8.74713 -8.46490 -7.78197 -6.28459 -4.35333 2.57882 3.14323 3.19425 3.21909 3.25258 3.83371 3.90469 4.22055 4.33473 4.40617 4.87099 4.99526 5.04105 5.21811 5.33575 5.37304 5.44461 5.48243 5.56072 5.58087 5.68159 5.69853 5.84122 5.91177 5.96528 5.98794 6.05042 6.18620 6.21198 6.32273 6.33396 6.60051 6.64810 6.78963 6.94958 7.00586 7.12615 7.17137 7.43679 7.45450 7.64737 7.93809 8.27186 8.67819 8.94426 9.30593 10.78004 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.010450 B = 0.008612 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.769615 B = 3250.518743 C = 4961.694142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.158 4.158 3 C 0.145 3.855 4 N -0.588 5.588 5 C 0.233 3.767 6 C -0.541 4.541 7 H 0.071 0.929 8 C 0.068 3.932 9 N -0.886 5.886 10 Si 0.889 3.111 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.509 3.491 15 O -0.561 6.561 16 C 0.072 3.928 17 H 0.129 0.871 18 O -0.366 6.366 19 C 0.071 3.929 20 C -0.174 4.174 21 H 0.103 0.897 22 C 0.086 3.914 23 O -0.393 6.393 24 C 0.065 3.935 25 C -0.156 4.156 26 C -0.100 4.100 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.267 0.733 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.125 0.875 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.754 5.433 4.230 8.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.177 4.177 3 C 0.022 3.978 4 N -0.319 5.319 5 C 0.114 3.886 6 C -0.579 4.579 7 H 0.089 0.911 8 C -0.136 4.136 9 N -0.524 5.524 10 Si 0.716 3.284 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.296 3.704 15 O -0.441 6.441 16 C 0.012 3.988 17 H 0.147 0.853 18 O -0.285 6.285 19 C -0.005 4.005 20 C -0.193 4.193 21 H 0.121 0.879 22 C 0.009 3.991 23 O -0.312 6.312 24 C -0.012 4.012 25 C -0.193 4.193 26 C -0.119 4.119 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.143 0.857 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.268 5.478 4.344 8.754 hybrid contribution 0.993 0.299 -0.539 1.168 sum -4.275 5.777 3.805 8.132 Atomic orbital electron populations 1.23740 0.95914 1.01381 1.01599 1.23383 0.96109 0.99381 0.98799 1.20439 0.92876 0.94766 0.89682 1.48205 1.15842 1.57904 1.09957 1.19533 0.75895 0.94872 0.98347 1.21519 0.93282 1.00861 1.42281 0.91136 1.24935 0.98059 0.95465 0.95177 1.69906 1.15010 1.20996 1.46472 0.86691 0.79896 0.81651 0.80127 1.19812 1.21121 1.19999 1.20688 0.88272 0.77241 0.84204 1.90572 1.18947 1.51792 1.82751 1.22723 0.93353 0.99345 0.83372 0.85341 1.88987 1.76556 1.27588 1.35321 1.22504 0.99771 0.82557 0.95683 1.23176 0.99441 0.96339 1.00299 0.87926 1.22156 0.98801 0.91526 0.86600 1.87715 1.59587 1.48565 1.35361 1.22644 0.89853 0.93918 0.94740 1.22535 1.05675 0.94679 0.96458 1.22313 0.97497 0.92674 0.99375 0.89020 0.88650 0.89074 0.87525 0.89326 0.90812 0.94214 0.94567 0.92328 0.91730 0.90957 0.92876 0.88851 0.93712 0.89074 0.85723 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 14.32 29.02 0.42 -2.44 16 2 C -0.16 -2.65 9.85 -36.02 -0.35 -3.00 16 3 C 0.15 2.67 5.84 -5.19 -0.03 2.63 16 4 N -0.59 -11.94 2.44 -176.43 -0.43 -12.37 16 5 C 0.23 5.17 5.05 -5.19 -0.03 5.15 16 6 C -0.54 -12.53 7.12 -34.44 -0.25 -12.77 16 7 H 0.07 1.61 6.15 -52.49 -0.32 1.29 16 8 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -22.91 13.29 55.43 0.74 -22.17 16 10 Si 0.89 18.94 29.54 -169.99 -5.02 13.92 16 11 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 12 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 14 C 0.51 10.56 5.24 -10.98 -0.06 10.50 16 15 O -0.56 -12.62 14.82 -10.59 -0.16 -12.77 16 16 C 0.07 1.38 3.51 -27.98 -0.10 1.28 16 17 H 0.13 2.56 5.64 -51.93 -0.29 2.27 16 18 O -0.37 -6.94 10.99 -51.38 -0.56 -7.50 16 19 C 0.07 1.10 7.32 36.67 0.27 1.36 16 20 C -0.17 -2.71 2.10 -90.36 -0.19 -2.90 16 21 H 0.10 1.89 6.64 -51.93 -0.34 1.54 16 22 C 0.09 1.14 6.74 36.27 0.24 1.39 16 23 O -0.39 -6.15 10.63 -35.23 -0.37 -6.53 16 24 C 0.06 1.00 6.84 37.69 0.26 1.26 16 25 C -0.16 -2.73 4.38 -26.93 -0.12 -2.85 16 26 C -0.10 -1.69 2.42 -89.81 -0.22 -1.91 16 27 H 0.09 1.45 8.07 -51.93 -0.42 1.04 16 28 H 0.10 1.45 7.84 -52.49 -0.41 1.04 16 29 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.09 1.59 8.08 -51.93 -0.42 1.17 16 32 H 0.07 1.36 7.10 -51.93 -0.37 1.00 16 33 H 0.04 0.93 5.60 -51.93 -0.29 0.63 16 34 H 0.04 0.86 8.12 -51.93 -0.42 0.44 16 35 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.64 8.07 -51.93 -0.42 0.22 16 39 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.12 2.41 4.92 -51.92 -0.26 2.16 16 43 H 0.07 1.35 7.12 -51.93 -0.37 0.98 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -27.20 337.66 -7.40 -34.60 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.43 Total: 8.50 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -0.25 Total: -0.77 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.31 Total: -34.54 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -1.10 Total: -26.80 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.20 -7.40 -34.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292295016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.226 kcal (2) G-P(sol) polarization free energy of solvation -27.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds