Wall clock time and date at job start Tue Mar 31 2020 03:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 120.00196 * 2 1 4 4 N 1.46504 * 109.47179 * 122.66154 * 3 2 1 5 5 C 1.46499 * 119.99294 * 88.40695 * 4 3 2 6 6 C 1.50705 * 109.47347 * 83.32444 * 5 4 3 7 7 H 1.07996 * 119.99573 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99840 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99947 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99619 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47057 * 60.00053 * 10 8 6 12 12 H 1.48503 * 109.46711 * 179.97438 * 10 8 6 13 13 H 1.48490 * 109.47283 * 299.99791 * 10 8 6 14 14 C 1.34775 * 120.00019 * 268.40260 * 4 3 2 15 15 O 1.21276 * 120.00299 * 5.57865 * 14 4 3 16 16 C 1.50703 * 119.99832 * 185.57906 * 14 4 3 17 17 H 1.08998 * 110.53628 * 334.70568 * 16 14 4 18 18 O 1.45089 * 110.60211 * 211.69963 * 16 14 4 19 19 C 1.44676 * 109.62260 * 266.18494 * 18 16 14 20 20 C 1.52044 * 105.99467 * 3.42379 * 19 18 16 21 21 H 1.08995 * 110.27068 * 86.96684 * 20 19 18 22 22 C 1.51242 * 118.72251 * 214.98045 * 20 19 18 23 23 O 1.43974 * 106.42804 * 176.68751 * 22 20 19 24 24 C 1.42315 * 117.06971 * 302.63790 * 23 22 20 25 25 C 1.54015 * 112.18484 * 53.10323 * 24 23 22 26 26 C 1.51558 * 106.50701 * 305.89482 * 25 24 23 27 27 H 1.09002 * 110.76809 * 301.66789 * 26 25 24 28 28 H 1.07999 * 119.99985 * 354.75538 * 1 2 3 29 29 H 1.07999 * 119.99950 * 174.48914 * 1 2 3 30 30 H 1.08002 * 120.00281 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47340 * 242.66611 * 3 2 1 32 32 H 1.09004 * 109.46406 * 2.66468 * 3 2 1 33 33 H 1.09004 * 109.46136 * 203.31769 * 5 4 3 34 34 H 1.08991 * 109.47478 * 323.31431 * 5 4 3 35 35 H 0.97007 * 119.99580 * 180.02562 * 9 8 6 36 36 H 1.08998 * 110.14526 * 244.28868 * 19 18 16 37 37 H 1.09005 * 110.14565 * 122.55546 * 19 18 16 38 38 H 1.08999 * 110.05779 * 57.45013 * 22 20 19 39 39 H 1.09010 * 110.14076 * 295.95772 * 22 20 19 40 40 H 1.08994 * 108.94672 * 292.40385 * 24 23 22 41 41 H 1.09002 * 108.94056 * 173.79338 * 24 23 22 42 42 H 1.09007 * 110.04103 * 186.64408 * 25 24 23 43 43 H 1.08998 * 110.04535 * 65.14647 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9533 1.3553 1.1628 5 6 4.3116 0.8145 1.0695 6 6 5.2238 1.8495 0.4630 7 1 4.8310 2.8134 0.1755 8 6 6.5599 1.5656 0.2754 9 7 7.0384 0.3918 0.6261 10 14 7.6905 2.8482 -0.4771 11 1 7.6983 4.0631 0.3768 12 1 9.0677 2.3004 -0.5704 13 1 7.2045 3.2009 -1.8351 14 6 2.5222 1.8990 2.3182 15 8 1.3678 2.2545 2.4276 16 6 3.4746 2.0653 3.4743 17 1 4.2856 1.3400 3.4089 18 8 2.7718 1.9377 4.7372 19 6 2.3767 3.2474 5.2078 20 6 2.7948 4.2264 4.1222 21 1 2.0092 4.3165 3.3720 22 6 3.2772 5.6008 4.5295 23 8 3.6732 6.2691 3.3173 24 6 4.6697 5.6345 2.5238 25 6 4.3066 4.1751 2.1918 26 6 4.0284 3.4890 3.5143 27 1 4.8962 3.5492 4.1710 28 1 -0.5400 0.9314 0.0855 29 1 -0.5400 -0.9310 -0.0898 30 1 1.8500 -0.9353 0.0004 31 1 2.6539 1.3838 -0.9129 32 1 1.3561 2.1330 0.0478 33 1 4.6684 0.5550 2.0663 34 1 4.3055 -0.0768 0.4423 35 1 7.9785 0.1923 0.4943 36 1 2.8884 3.4810 6.1414 37 1 1.2968 3.2847 5.3514 38 1 4.1291 5.5133 5.2037 39 1 2.4720 6.1527 5.0147 40 1 5.6156 5.6493 3.0652 41 1 4.7879 6.1900 1.5934 42 1 5.1409 3.6882 1.6866 43 1 3.4180 4.1454 1.5613 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292295016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:27 Heat of formation + Delta-G solvation = -109.343576 kcal Electronic energy + Delta-G solvation = -26078.474492 eV Core-core repulsion = 22510.120987 eV Total energy + Delta-G solvation = -3568.353505 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.26470 -40.05025 -38.54331 -37.00255 -35.27104 -34.23740 -33.86549 -32.71084 -30.09186 -29.32651 -27.27262 -26.43617 -25.02646 -24.34194 -22.92404 -21.64366 -20.90360 -19.86165 -18.60274 -18.44872 -17.57528 -17.25733 -16.96615 -16.65732 -16.33306 -16.14806 -15.87084 -15.77651 -15.31647 -15.07619 -14.52232 -14.44151 -14.20861 -13.99473 -13.93743 -13.44639 -13.24134 -13.01590 -12.72636 -12.61052 -12.41990 -12.29907 -12.23244 -12.16386 -11.99188 -11.73520 -11.58305 -11.30561 -10.93871 -10.61172 -10.56315 -10.51175 -10.05306 -9.47912 -8.16028 -6.27715 1.24599 1.45784 1.48334 1.53806 1.61434 2.28125 2.45999 2.75680 2.92260 3.11135 3.15304 3.56156 3.67463 3.72810 4.02249 4.11441 4.19185 4.21212 4.29296 4.30899 4.40163 4.44462 4.50870 4.65253 4.70050 4.73049 4.77622 4.80153 4.86969 4.95762 4.99332 5.04958 5.23801 5.27435 5.34234 5.63138 5.64455 5.73337 5.76970 5.86037 6.07403 6.28483 6.55838 6.82748 7.26435 7.42650 8.90066 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.010450 B = 0.008612 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.769615 B = 3250.518743 C = 4961.694142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.181 4.181 3 C 0.144 3.856 4 N -0.588 5.588 5 C 0.247 3.753 6 C -0.534 4.534 7 H 0.073 0.927 8 C 0.026 3.974 9 N -0.920 5.920 10 Si 0.943 3.057 11 H -0.257 1.257 12 H -0.290 1.290 13 H -0.275 1.275 14 C 0.506 3.494 15 O -0.581 6.581 16 C 0.071 3.929 17 H 0.115 0.885 18 O -0.386 6.386 19 C 0.067 3.933 20 C -0.159 4.159 21 H 0.070 0.930 22 C 0.086 3.914 23 O -0.405 6.405 24 C 0.068 3.932 25 C -0.149 4.149 26 C -0.102 4.102 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.018 0.982 35 H 0.266 0.734 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.804 6.998 5.109 9.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.200 4.200 3 C 0.022 3.978 4 N -0.319 5.319 5 C 0.127 3.873 6 C -0.572 4.572 7 H 0.091 0.909 8 C -0.174 4.174 9 N -0.560 5.560 10 Si 0.768 3.232 11 H -0.182 1.182 12 H -0.216 1.216 13 H -0.200 1.200 14 C 0.294 3.706 15 O -0.463 6.463 16 C 0.011 3.989 17 H 0.133 0.867 18 O -0.305 6.305 19 C -0.009 4.009 20 C -0.178 4.178 21 H 0.089 0.911 22 C 0.010 3.990 23 O -0.324 6.324 24 C -0.008 4.008 25 C -0.186 4.186 26 C -0.121 4.121 27 H 0.127 0.873 28 H 0.113 0.887 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.136 0.864 40 H 0.079 0.921 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.336 7.057 5.220 10.273 hybrid contribution 0.885 -0.227 -0.804 1.217 sum -4.451 6.830 4.416 9.272 Atomic orbital electron populations 1.23953 0.95259 1.02601 0.98588 1.23274 0.96770 0.98430 1.01576 1.20513 0.92639 0.95741 0.88917 1.48208 1.15431 1.57602 1.10649 1.19233 0.76794 0.94126 0.97192 1.21652 0.93356 1.00839 1.41332 0.90944 1.25570 0.99355 0.96895 0.95617 1.70016 1.15184 1.22707 1.48047 0.85827 0.77777 0.80079 0.79482 1.18178 1.21632 1.19997 1.21009 0.88278 0.76691 0.84578 1.90545 1.19790 1.52762 1.83165 1.22644 0.92662 1.00524 0.83091 0.86711 1.88956 1.76664 1.29930 1.34912 1.22751 1.00474 0.80927 0.96767 1.23047 0.97596 0.97754 0.99445 0.91116 1.22380 1.00466 0.89983 0.86160 1.87706 1.59691 1.48787 1.36231 1.22626 0.90427 0.92166 0.95593 1.22357 1.03595 0.96512 0.96155 1.22366 0.98721 0.91337 0.99643 0.87344 0.88690 0.86407 0.87566 0.89447 0.91191 0.95326 0.96403 0.92509 0.88190 0.90743 0.90510 0.86357 0.92065 0.88300 0.87698 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.85 14.32 67.78 0.97 -3.88 16 2 C -0.18 -6.11 9.85 25.65 0.25 -5.86 16 3 C 0.14 5.41 5.84 85.63 0.50 5.91 16 4 N -0.59 -24.57 2.44 -830.48 -2.03 -26.60 16 5 C 0.25 11.32 5.05 85.63 0.43 11.75 16 6 C -0.53 -25.03 7.12 25.60 0.18 -24.85 16 7 H 0.07 3.34 6.15 -2.91 -0.02 3.32 16 8 C 0.03 1.28 5.46 84.65 0.46 1.74 16 9 N -0.92 -48.27 13.29 21.45 0.28 -47.98 16 10 Si 0.94 38.48 29.54 68.60 2.03 40.51 16 11 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 12 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 14 C 0.51 21.43 5.24 87.66 0.46 21.89 16 15 O -0.58 -26.54 14.82 12.42 0.18 -26.35 16 16 C 0.07 2.74 3.51 29.79 0.10 2.84 16 17 H 0.12 4.71 5.64 -2.39 -0.01 4.70 16 18 O -0.39 -14.39 10.99 -133.54 -1.47 -15.86 16 19 C 0.07 1.91 7.32 71.67 0.52 2.44 16 20 C -0.16 -4.72 2.10 -10.63 -0.02 -4.74 16 21 H 0.07 2.57 6.64 -2.39 -0.02 2.56 16 22 C 0.09 2.01 6.74 71.41 0.48 2.50 16 23 O -0.40 -11.62 10.63 -148.98 -1.58 -13.20 16 24 C 0.07 1.96 6.84 72.33 0.49 2.45 16 25 C -0.15 -5.11 4.38 30.46 0.13 -4.98 16 26 C -0.10 -3.36 2.42 -10.27 -0.02 -3.38 16 27 H 0.11 3.21 8.07 -2.39 -0.02 3.20 16 28 H 0.09 2.79 7.84 -2.91 -0.02 2.77 16 29 H 0.12 2.81 8.06 -2.91 -0.02 2.78 16 30 H 0.11 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.09 3.22 8.08 -2.39 -0.02 3.20 16 32 H 0.07 2.65 7.10 -2.38 -0.02 2.63 16 33 H 0.03 1.39 5.60 -2.38 -0.01 1.38 16 34 H 0.02 0.88 8.12 -2.39 -0.02 0.86 16 35 H 0.27 13.42 8.31 -92.70 -0.77 12.65 16 36 H 0.10 2.18 8.10 -2.39 -0.02 2.16 16 37 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.08 1.49 8.07 -2.39 -0.02 1.47 16 39 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.10 4.03 4.92 -2.38 -0.01 4.02 16 43 H 0.05 1.78 7.12 -2.39 -0.02 1.77 16 Total: -1.00 -58.46 337.66 3.36 -55.09 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 1.00 Total: 30.57 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 4.95 Total: 3.83 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -1.74 Total: -74.58 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -2.87 Total: -55.42 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -58.46 3.36 -55.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292295016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.251 kcal (2) G-P(sol) polarization free energy of solvation -58.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds