Wall clock time and date at job start Tue Mar 31 2020 03:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99726 * 2 1 4 4 H 1.48496 * 109.47353 * 239.99994 * 3 2 1 5 5 H 1.48500 * 109.47252 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47119 * 120.00212 * 3 2 1 7 7 C 1.37876 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99912 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00074 * 359.97438 * 7 2 1 10 10 O 1.42902 * 113.41057 * 313.20205 * 9 7 2 11 11 C 1.53493 * 114.20671 * 179.97438 * 9 7 2 12 12 N 1.47069 * 87.98529 * 220.34405 * 11 9 7 13 13 C 1.34771 * 136.05753 * 207.08026 * 12 11 9 14 14 O 1.21284 * 120.00250 * 4.90477 * 13 12 11 15 15 C 1.50703 * 119.99916 * 184.90334 * 13 12 11 16 16 C 1.53002 * 109.61549 * 291.40662 * 15 13 12 17 17 C 1.53004 * 117.49851 * 2.25797 * 16 15 13 18 18 C 1.52995 * 117.50267 * 293.63261 * 16 15 13 19 19 C 1.53179 * 109.54191 * 51.63273 * 15 13 12 20 20 C 1.53094 * 109.21575 * 62.91984 * 19 15 13 21 21 O 1.42899 * 109.41541 * 57.57525 * 20 19 15 22 22 C 1.42904 * 114.09765 * 298.83998 * 21 20 19 23 23 C 1.53091 * 109.41476 * 61.16340 * 22 21 20 24 24 C 1.47069 * 87.88302 * 27.34502 * 12 11 9 25 25 H 0.96996 * 120.00520 * 359.97438 * 1 2 3 26 26 H 0.96701 * 113.99844 * 46.80676 * 10 9 7 27 27 H 1.09006 * 113.46316 * 105.56685 * 11 9 7 28 28 H 1.08996 * 113.52507 * 335.13691 * 11 9 7 29 29 H 1.09004 * 115.54573 * 147.95375 * 16 15 13 30 30 H 1.08997 * 117.49633 * 359.97438 * 17 16 15 31 31 H 1.08994 * 117.49658 * 145.01880 * 17 16 15 32 32 H 1.09001 * 117.49706 * 214.97925 * 18 16 15 33 33 H 1.08998 * 117.49792 * 359.97438 * 18 16 15 34 34 H 1.09001 * 109.52287 * 302.98004 * 19 15 13 35 35 H 1.08997 * 109.51774 * 182.85693 * 19 15 13 36 36 H 1.08995 * 109.47968 * 177.56376 * 20 19 15 37 37 H 1.09001 * 109.47598 * 297.59117 * 20 19 15 38 38 H 1.09001 * 109.48272 * 181.14103 * 22 21 20 39 39 H 1.08998 * 109.48166 * 301.17656 * 22 21 20 40 40 H 1.08996 * 109.52795 * 62.29083 * 23 22 21 41 41 H 1.08993 * 109.52586 * 182.42228 * 23 22 21 42 42 H 1.09001 * 113.47062 * 87.43372 * 24 12 11 43 43 H 1.08995 * 113.46606 * 217.87791 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.1902 -2.5423 0.9558 11 6 2.1489 -3.7442 -0.0018 12 7 1.2094 -4.3570 -0.9528 13 6 0.8347 -5.6108 -1.2754 14 8 1.2628 -6.5532 -0.6433 15 6 -0.1162 -5.8418 -2.4215 16 6 -1.5024 -5.3084 -2.0543 17 6 -1.6590 -4.6253 -0.6942 18 6 -2.2551 -6.0153 -0.9254 19 6 0.3984 -5.1160 -3.6684 20 6 1.7494 -5.7101 -4.0757 21 8 1.6013 -7.1124 -4.3068 22 6 1.1694 -7.8501 -3.1616 23 6 -0.2049 -7.3422 -2.7177 24 6 0.8634 -2.9999 -1.4016 25 1 -0.4851 0.8400 0.0004 26 1 -0.3736 -1.7566 0.9535 27 1 2.1859 -4.2536 0.9612 28 1 3.1385 -3.5665 -0.4227 29 1 -2.0910 -4.9181 -2.8846 30 1 -0.7745 -4.5563 -0.0609 31 1 -2.3507 -3.7855 -0.6295 32 1 -3.3390 -6.0899 -1.0128 33 1 -1.7630 -6.8607 -0.4445 34 1 0.5183 -4.0551 -3.4489 35 1 -0.3149 -5.2411 -4.4830 36 1 2.0992 -5.2262 -4.9876 37 1 2.4733 -5.5476 -3.2772 38 1 1.1013 -8.9081 -3.4151 39 1 1.8858 -7.7157 -2.3512 40 1 -0.9307 -7.5131 -3.5127 41 1 -0.5169 -7.8740 -1.8190 42 1 1.5139 -2.6250 -2.1919 43 1 -0.1947 -2.8752 -1.6313 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329313968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:08 Heat of formation + Delta-G solvation = -62.519042 kcal Electronic energy + Delta-G solvation = -26266.204049 eV Core-core repulsion = 22699.881008 eV Total energy + Delta-G solvation = -3566.323041 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.97240 -38.75558 -37.27217 -36.54970 -34.07740 -32.81477 -32.22150 -31.02109 -28.74498 -26.04706 -25.23679 -25.04789 -23.54199 -22.03768 -21.46203 -20.85876 -19.52681 -17.98415 -17.27699 -16.59321 -16.01956 -15.86602 -15.49963 -15.21801 -15.01955 -14.60967 -14.34905 -14.02170 -13.59201 -13.40021 -13.00615 -12.69584 -12.61155 -12.28044 -12.20196 -11.80149 -11.64115 -11.50967 -11.19071 -11.09366 -11.05300 -10.97622 -10.83341 -10.53560 -10.36441 -10.25971 -10.06274 -9.75892 -9.51201 -9.34887 -9.04548 -8.79760 -8.37808 -7.84757 -6.43971 -4.54077 3.11720 3.13120 3.19396 3.21551 3.50192 3.98989 4.01309 4.14802 4.60653 4.78627 4.86629 4.89604 5.07944 5.10482 5.27038 5.34105 5.38144 5.46984 5.54815 5.66337 5.74944 5.77516 5.82405 5.90969 5.92058 5.97971 6.12383 6.15605 6.18323 6.26205 6.31803 6.39385 6.43817 6.48078 6.63024 6.66523 6.72935 7.09201 7.30739 7.59237 7.76914 8.45788 8.49901 8.72317 9.17329 9.45119 10.62358 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.021914 B = 0.005335 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.436003 B = 5247.135948 C = 5692.302302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.244 3.756 10 O -0.568 6.568 11 C 0.103 3.897 12 N -0.629 5.629 13 C 0.548 3.452 14 O -0.562 6.562 15 C -0.040 4.040 16 C -0.149 4.149 17 C -0.172 4.172 18 C -0.183 4.183 19 C -0.146 4.146 20 C 0.060 3.940 21 O -0.387 6.387 22 C 0.052 3.948 23 C -0.124 4.124 24 C 0.070 3.930 25 H 0.274 0.726 26 H 0.394 0.606 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 -7.053 -6.735 10.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.202 3.798 10 O -0.381 6.381 11 C -0.020 4.020 12 N -0.362 5.362 13 C 0.338 3.662 14 O -0.442 6.442 15 C -0.043 4.043 16 C -0.167 4.167 17 C -0.208 4.208 18 C -0.220 4.220 19 C -0.183 4.183 20 C -0.017 4.017 21 O -0.306 6.306 22 C -0.024 4.024 23 C -0.162 4.162 24 C -0.052 4.052 25 H 0.085 0.915 26 H 0.250 0.750 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.126 0.874 30 H 0.141 0.859 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.002 -8.285 -6.494 10.715 hybrid contribution -0.034 1.650 -0.039 1.651 sum -2.036 -6.635 -6.533 9.532 Atomic orbital electron populations 1.69244 1.06143 1.28295 1.50069 1.25047 0.95006 0.99822 0.93001 0.86394 0.79518 0.81662 0.78993 1.19910 1.20993 1.19862 1.21393 0.93855 0.89842 1.52183 0.91112 1.19525 0.85302 0.90798 0.84213 1.86033 1.44906 1.48240 1.58937 1.23353 0.93815 0.92482 0.92308 1.49762 1.42025 1.04762 1.39615 1.19790 0.81388 0.80960 0.84095 1.90604 1.58489 1.41089 1.54065 1.20336 0.93433 0.96649 0.93861 1.22134 0.95329 1.05764 0.93480 1.23510 1.04723 0.94743 0.97859 1.22970 0.99134 0.97257 1.02606 1.22332 0.98261 1.01175 0.96577 1.22560 0.95858 0.81759 1.01483 1.87858 1.88007 1.18873 1.35819 1.22758 0.95333 0.95456 0.88874 1.21992 0.98407 0.93674 1.02171 1.24320 1.00792 0.77669 1.02468 0.91537 0.74978 0.91662 0.89869 0.87407 0.85863 0.88691 0.89114 0.89001 0.89482 0.90279 0.88672 0.93300 0.89219 0.91354 0.90787 0.90097 0.90526 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.74 11.01 55.43 0.61 -21.13 16 2 C 0.07 1.76 5.40 -17.82 -0.10 1.67 16 3 Si 0.91 18.84 29.54 -169.99 -5.02 13.82 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.53 -12.80 8.69 -34.44 -0.30 -13.10 16 8 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.24 5.49 1.58 -91.12 -0.14 5.35 16 10 O -0.57 -13.68 12.45 -35.23 -0.44 -14.12 16 11 C 0.10 2.15 8.03 -8.51 -0.07 2.08 16 12 N -0.63 -12.41 2.38 -185.04 -0.44 -12.85 16 13 C 0.55 10.53 3.74 -10.99 -0.04 10.49 16 14 O -0.56 -12.28 14.99 5.55 0.08 -12.19 16 15 C -0.04 -0.63 0.43 -155.47 -0.07 -0.69 16 16 C -0.15 -2.24 4.96 -90.62 -0.45 -2.69 16 17 C -0.17 -2.95 7.63 -26.73 -0.20 -3.15 16 18 C -0.18 -2.70 9.61 -26.73 -0.26 -2.95 16 19 C -0.15 -2.08 4.73 -26.59 -0.13 -2.21 16 20 C 0.06 0.87 6.62 37.21 0.25 1.11 16 21 O -0.39 -5.93 10.77 -35.23 -0.38 -6.31 16 22 C 0.05 0.77 6.56 37.20 0.24 1.02 16 23 C -0.12 -1.80 4.26 -26.58 -0.11 -1.91 16 24 C 0.07 1.40 4.90 -8.37 -0.04 1.36 16 25 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 26 H 0.39 9.71 6.33 45.56 0.29 10.00 16 27 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 29 H 0.11 1.45 8.06 -51.93 -0.42 1.03 16 30 H 0.12 2.54 4.20 -51.93 -0.22 2.32 16 31 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.44 7.27 -51.93 -0.38 1.06 16 34 H 0.09 1.29 5.59 -51.93 -0.29 1.00 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.78 7.38 -51.93 -0.38 0.40 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.17 6.14 -51.93 -0.32 0.85 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.21 6.85 -51.93 -0.36 0.85 16 42 H 0.08 1.48 7.86 -51.93 -0.41 1.07 16 43 H 0.07 1.45 6.43 -51.93 -0.33 1.12 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -26.15 326.90 -7.82 -33.96 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -5.74 Total: 17.52 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.42 Total: -3.63 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.17 Total: -33.98 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.73 Total: -32.62 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.15 -7.82 -33.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329313968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.559 kcal (2) G-P(sol) polarization free energy of solvation -26.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds