Wall clock time and date at job start Tue Mar 31 2020 04:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00367 * 2 1 4 4 H 1.48504 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47072 * 299.99964 * 3 2 1 6 6 H 1.48496 * 109.47258 * 60.00091 * 3 2 1 7 7 C 1.37882 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00231 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99653 * 0.26911 * 7 2 1 10 10 C 1.53000 * 109.46785 * 179.72697 * 9 7 2 11 11 C 1.52998 * 109.46774 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46901 * 180.02562 * 11 10 9 13 13 C 1.34785 * 119.99943 * 180.02562 * 12 11 10 14 14 O 1.21582 * 120.00006 * 354.80251 * 13 12 11 15 15 N 1.34771 * 119.99762 * 174.80679 * 13 12 11 16 16 C 1.45725 * 117.56729 * 184.74906 * 15 13 12 17 17 C 1.53113 * 109.32488 * 141.85612 * 16 15 13 18 18 C 1.52910 * 108.28788 * 54.45888 * 17 16 15 19 19 C 1.52851 * 110.01549 * 293.48972 * 18 17 16 20 20 H 1.09003 * 111.19007 * 290.13368 * 19 18 17 21 21 C 1.52120 * 107.75242 * 167.86587 * 19 18 17 22 22 O 1.21290 * 125.14604 * 82.08818 * 21 19 18 23 23 N 1.33735 * 109.76727 * 261.69234 * 21 19 18 24 24 C 1.47072 * 111.27855 * 358.84905 * 23 21 19 25 25 C 1.43873 * 117.57214 * 4.48041 * 15 13 12 26 26 H 1.08999 * 109.36569 * 331.56626 * 25 15 13 27 27 H 0.97008 * 119.99528 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47330 * 299.72825 * 9 7 2 29 29 H 1.08997 * 109.47099 * 59.73114 * 9 7 2 30 30 H 1.08995 * 109.47291 * 300.00152 * 10 9 7 31 31 H 1.08997 * 109.46962 * 60.00333 * 10 9 7 32 32 H 1.09003 * 109.47503 * 299.99513 * 11 10 9 33 33 H 1.08997 * 109.47262 * 60.00323 * 11 10 9 34 34 H 0.96995 * 120.00443 * 359.97438 * 12 11 10 35 35 H 1.08994 * 109.49484 * 261.81500 * 16 15 13 36 36 H 1.09000 * 109.49483 * 21.87605 * 16 15 13 37 37 H 1.09004 * 109.70005 * 174.15476 * 17 16 15 38 38 H 1.08995 * 109.70127 * 294.75895 * 17 16 15 39 39 H 1.08999 * 109.38340 * 53.65984 * 18 17 16 40 40 H 1.09002 * 109.37879 * 173.43532 * 18 17 16 41 41 H 0.97001 * 124.32374 * 178.59968 * 23 21 19 42 42 H 1.08999 * 110.39013 * 223.59986 * 24 23 21 43 43 H 1.09001 * 110.48631 * 101.26155 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0072 10 6 2.2451 -3.6621 -0.0133 11 6 1.4800 -4.9870 -0.0208 12 7 2.4320 -6.1006 -0.0260 13 6 1.9826 -7.3713 -0.0335 14 8 0.7912 -7.5954 0.0595 15 7 2.8540 -8.3935 -0.1439 16 6 2.3049 -9.7389 -0.2530 17 6 3.1473 -10.5514 -1.2402 18 6 4.6066 -10.4931 -0.7872 19 6 5.1387 -9.0663 -0.9190 20 1 5.2491 -8.7821 -1.9656 21 6 6.4685 -8.9973 -0.1835 22 8 7.5367 -9.3489 -0.6377 23 7 6.2841 -8.4825 1.0369 24 6 4.8741 -8.1282 1.2593 25 6 4.2569 -8.0748 -0.1513 26 1 4.3981 -7.0740 -0.5596 27 1 -0.4850 0.8402 0.0004 28 1 0.6243 -2.5615 0.8824 29 1 0.6242 -2.5523 -0.8975 30 1 2.8717 -3.5998 -0.9030 31 1 2.8717 -3.6090 0.8769 32 1 0.8531 -5.0497 0.8687 33 1 0.8536 -5.0399 -0.9112 34 1 3.3856 -5.9235 -0.0248 35 1 2.3250 -10.2204 0.7246 36 1 1.2767 -9.6843 -0.6106 37 1 2.8064 -11.5868 -1.2489 38 1 3.0554 -10.1254 -2.2392 39 1 4.6753 -10.8100 0.2535 40 1 5.2051 -11.1595 -1.4084 41 1 6.9892 -8.3621 1.6921 42 1 4.7990 -7.1547 1.7438 43 1 4.3796 -8.8904 1.8615 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358983417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:41 Heat of formation + Delta-G solvation = -92.655569 kcal Electronic energy + Delta-G solvation = -24082.307725 eV Core-core repulsion = 20546.970616 eV Total energy + Delta-G solvation = -3535.337108 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.57543 -40.87090 -38.48502 -37.14004 -36.32980 -35.30352 -34.34883 -32.80793 -31.77044 -28.72109 -28.16336 -26.18616 -24.77678 -24.07971 -22.39973 -22.29339 -21.36344 -20.11624 -19.21476 -18.61692 -18.40287 -17.31986 -17.00454 -16.63680 -16.54725 -16.31722 -15.94174 -15.61921 -15.31379 -14.91073 -14.81944 -14.60273 -14.43446 -14.20852 -14.10149 -13.70302 -13.41638 -13.31881 -12.76941 -12.61593 -12.54341 -12.33838 -12.26317 -11.86478 -11.72772 -11.64668 -11.57262 -11.26298 -11.10391 -10.92845 -10.54066 -10.30521 -10.17488 -9.60507 -8.17901 -6.28732 1.42668 1.43102 1.44546 1.53975 1.56360 2.01101 2.30830 2.42893 2.73337 3.16325 3.19820 3.27657 3.53251 3.71549 3.94503 4.08193 4.15227 4.19631 4.27174 4.44355 4.51188 4.53288 4.59318 4.64557 4.82595 4.87261 4.97076 4.99600 5.00537 5.09539 5.19758 5.30949 5.46292 5.54301 5.58587 5.70062 5.74636 5.77618 5.87292 5.92697 6.24905 6.86848 6.90694 7.14584 7.40817 7.47822 8.94298 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.020610 B = 0.003072 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.223515 B = 9111.137007 C =10137.817215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.101 4.101 11 C 0.148 3.852 12 N -0.731 5.731 13 C 0.697 3.303 14 O -0.625 6.625 15 N -0.598 5.598 16 C 0.125 3.875 17 C -0.120 4.120 18 C -0.102 4.102 19 C -0.118 4.118 20 H 0.121 0.879 21 C 0.524 3.476 22 O -0.575 6.575 23 N -0.711 5.711 24 C 0.085 3.915 25 C 0.132 3.868 26 H 0.105 0.895 27 H 0.263 0.737 28 H -0.006 1.006 29 H -0.008 1.008 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.408 0.592 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.421 0.579 42 H 0.104 0.896 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.514 -22.438 1.221 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.084 0.916 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.023 3.977 12 N -0.388 5.388 13 C 0.398 3.602 14 O -0.506 6.506 15 N -0.334 5.334 16 C 0.003 3.997 17 C -0.158 4.158 18 C -0.140 4.140 19 C -0.140 4.140 20 H 0.139 0.861 21 C 0.309 3.691 22 O -0.454 6.454 23 N -0.366 5.366 24 C -0.041 4.041 25 C 0.025 3.975 26 H 0.122 0.878 27 H 0.071 0.929 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.247 0.753 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.261 0.739 42 H 0.122 0.878 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.984 -22.706 0.974 25.242 hybrid contribution 0.616 1.330 0.336 1.504 sum 11.599 -21.375 1.310 24.355 Atomic orbital electron populations 1.70116 1.07887 1.27651 1.51844 1.25994 0.95714 1.03445 0.94912 0.85403 0.79247 0.78856 0.77548 1.18215 1.20734 1.20658 1.21718 0.93741 0.92026 1.50152 0.91552 1.18940 0.94457 0.92860 0.95168 1.21593 0.98456 0.91798 1.02098 1.21109 0.91329 0.84479 1.00757 1.45317 1.10750 1.03796 1.78956 1.16165 0.84876 0.81361 0.77762 1.90909 1.16279 1.84296 1.59070 1.46023 1.03913 1.06432 1.76989 1.21426 0.98250 0.79587 1.00480 1.21800 0.93485 1.01710 0.98804 1.21323 0.96791 0.92813 1.03083 1.22130 0.91876 0.98429 1.01586 0.86119 1.20945 0.89867 0.75396 0.82860 1.90761 1.31022 1.51792 1.71871 1.46049 1.11287 1.62915 1.16302 1.22747 0.80234 1.03692 0.97426 1.20913 0.80786 0.99936 0.95829 0.87775 0.92869 0.98809 0.98924 0.91515 0.91241 0.93106 0.93355 0.75339 0.90733 0.90375 0.87570 0.91076 0.90780 0.89983 0.73893 0.87753 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.54 -29.32 9.11 25.60 0.23 -29.09 16 8 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.68 5.27 30.59 0.16 -3.52 16 11 C 0.15 4.89 5.68 86.38 0.49 5.38 16 12 N -0.73 -18.31 5.36 -478.53 -2.57 -20.87 16 13 C 0.70 18.50 8.16 179.05 1.46 19.96 16 14 O -0.63 -22.40 15.61 -3.97 -0.06 -22.46 16 15 N -0.60 -10.59 2.81 -820.88 -2.31 -12.90 16 16 C 0.12 1.89 6.20 86.56 0.54 2.42 16 17 C -0.12 -1.20 6.11 30.60 0.19 -1.01 16 18 C -0.10 -1.08 5.01 30.51 0.15 -0.93 16 19 C -0.12 -1.55 3.30 -11.03 -0.04 -1.58 16 20 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 21 C 0.52 9.12 7.53 88.27 0.67 9.79 16 22 O -0.57 -15.23 18.03 -3.06 -0.06 -15.29 16 23 N -0.71 -8.37 6.22 -459.76 -2.86 -11.23 16 24 C 0.08 0.86 7.40 86.63 0.64 1.50 16 25 C 0.13 1.72 2.66 45.94 0.12 1.84 16 26 H 0.10 1.29 5.87 -2.39 -0.01 1.28 16 27 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 28 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.41 7.65 5.92 -92.71 -0.55 7.10 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.55 7.04 -2.39 -0.02 1.53 16 37 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.74 7.98 -2.39 -0.02 0.72 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.42 3.88 8.96 -92.71 -0.83 3.05 16 42 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -75.15 346.70 -0.67 -75.82 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -0.36 Total: 11.37 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 5.22 Total: 6.38 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -7.45 Total: -101.01 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.12 Total: -37.75 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -75.15 -0.67 -75.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358983417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.831 kcal (2) G-P(sol) polarization free energy of solvation -75.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds