Wall clock time and date at job start Tue Mar 31 2020 04:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99640 * 2 1 4 4 H 1.48499 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47126 * 299.99947 * 3 2 1 6 6 H 1.48496 * 109.47151 * 59.99671 * 3 2 1 7 7 C 1.38947 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99931 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00030 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99977 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.46923 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99953 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00097 * 180.27545 * 14 13 12 17 17 C 1.47071 * 136.05574 * 359.36381 * 16 14 13 18 18 C 1.53242 * 88.08077 * 207.20007 * 17 16 14 19 19 C 1.52998 * 114.32360 * 220.46916 * 18 17 16 20 20 C 1.54269 * 110.03446 * 271.66587 * 19 18 17 21 21 C 1.54961 * 104.16230 * 217.13952 * 20 19 18 22 22 C 1.54893 * 102.77835 * 37.88242 * 21 20 19 23 23 C 1.53882 * 110.03390 * 154.44572 * 19 18 17 24 24 C 1.47068 * 136.05956 * 179.72548 * 16 14 13 25 25 H 0.96990 * 120.00229 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00482 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47477 * 59.99807 * 12 10 9 28 28 H 1.08997 * 109.47150 * 299.99702 * 12 10 9 29 29 H 0.97000 * 120.00410 * 0.02562 * 13 12 10 30 30 H 1.09003 * 113.46733 * 321.92543 * 17 16 14 31 31 H 1.09001 * 113.47022 * 92.37268 * 17 16 14 32 32 H 1.08998 * 114.01968 * 87.71123 * 18 17 16 33 33 H 1.09002 * 110.01996 * 33.05406 * 19 18 17 34 34 H 1.09004 * 110.47942 * 335.78410 * 20 19 18 35 35 H 1.09003 * 110.48669 * 98.42723 * 20 19 18 36 36 H 1.09005 * 110.72010 * 279.57043 * 21 20 19 37 37 H 1.08998 * 110.92591 * 156.29402 * 21 20 19 38 38 H 1.08996 * 110.48601 * 203.40870 * 22 21 20 39 39 H 1.09001 * 110.59691 * 80.82121 * 22 21 20 40 40 H 1.08996 * 110.03607 * 238.56773 * 23 19 18 41 41 H 1.08995 * 110.02898 * 0.02562 * 23 19 18 42 42 H 1.09001 * 113.46879 * 267.62846 * 24 16 14 43 43 H 1.08999 * 113.46815 * 38.06610 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2105 -3.5577 -0.0001 12 6 1.2441 -4.8629 -0.0011 13 7 2.1962 -5.9763 -0.0016 14 6 1.7470 -7.2471 -0.0017 15 8 0.5516 -7.4693 -0.0018 16 7 2.6228 -8.2714 0.0035 17 6 4.0867 -8.4130 -0.0015 18 6 3.9015 -9.7700 -0.6891 19 6 4.8409 -10.8664 -0.1829 20 6 6.1597 -10.8434 -0.9830 21 6 6.5391 -12.3385 -1.1317 22 6 5.1654 -13.0206 -1.3481 23 6 4.2091 -12.2503 -0.4144 24 6 2.5354 -9.7395 0.0101 25 1 -0.4850 0.8399 -0.0004 26 1 0.3535 -2.3907 -0.0005 27 1 0.6177 -4.9205 -0.8913 28 1 0.6171 -4.9209 0.8886 29 1 3.1498 -5.7991 -0.0012 30 1 4.5919 -7.6768 -0.6267 31 1 4.5190 -8.4874 0.9963 32 1 3.8485 -9.7129 -1.7763 33 1 5.0454 -10.7221 0.8780 34 1 6.0038 -10.3904 -1.9622 35 1 6.9312 -10.3062 -0.4315 36 1 7.0149 -12.7078 -0.2231 37 1 7.1868 -12.4918 -1.9948 38 1 5.2123 -14.0716 -1.0631 39 1 4.8473 -12.9216 -2.3859 40 1 4.1077 -12.7779 0.5340 41 1 3.2334 -12.1407 -0.8877 42 1 2.5503 -10.1707 1.0111 43 1 1.7241 -10.1288 -0.6050 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377018407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:13 Heat of formation + Delta-G solvation = -45.533986 kcal Electronic energy + Delta-G solvation = -23118.663867 eV Core-core repulsion = 19585.370104 eV Total energy + Delta-G solvation = -3533.293763 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.75147 -39.03442 -38.10262 -37.09163 -34.38346 -33.59289 -31.40647 -31.03852 -29.08813 -28.27580 -26.61193 -25.94663 -24.31361 -22.04527 -20.97907 -19.89902 -19.63634 -19.42828 -18.20987 -17.75605 -16.31569 -16.17155 -15.86902 -15.50305 -15.22224 -14.80722 -14.43024 -14.23567 -13.86037 -13.67746 -13.54927 -13.46652 -13.31569 -12.77601 -12.20989 -12.17753 -11.81772 -11.79942 -11.62242 -11.42436 -11.36620 -11.13706 -11.10361 -10.98144 -10.71061 -10.47137 -10.40416 -10.31827 -9.91433 -9.63946 -8.93893 -8.61476 -8.44288 -8.09007 -6.50509 -3.92511 2.56001 3.10759 3.22811 3.29582 3.39967 3.76090 3.88605 4.03403 4.18382 4.30527 4.36598 4.51286 4.82640 4.84444 4.91031 5.13035 5.16027 5.18174 5.23627 5.27741 5.29548 5.35958 5.38303 5.43128 5.48155 5.59632 5.61476 5.66176 5.77654 5.90490 5.96201 5.99708 6.00651 6.02691 6.10407 6.13511 6.78620 7.40238 7.47106 7.93616 8.24080 8.46347 8.82829 9.05654 9.40623 9.88517 10.66509 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.034621 B = 0.002385 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.552096 B =11737.277266 C =12425.329880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.430 3.570 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.721 5.721 14 C 0.735 3.265 15 O -0.596 6.596 16 N -0.669 5.669 17 C 0.103 3.897 18 C -0.117 4.117 19 C -0.079 4.079 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.121 4.121 24 C 0.132 3.868 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.406 0.594 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.427 -23.300 -1.194 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.185 5.185 10 C 0.215 3.785 11 O -0.484 6.484 12 C 0.000 4.000 13 N -0.378 5.378 14 C 0.438 3.562 15 O -0.474 6.474 16 N -0.409 5.409 17 C -0.020 4.020 18 C -0.136 4.136 19 C -0.099 4.099 20 C -0.157 4.157 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.159 4.159 24 C 0.008 3.992 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.244 0.756 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.012 -23.027 -1.185 24.756 hybrid contribution 0.149 1.060 0.092 1.074 sum 9.160 -21.967 -1.093 23.825 Atomic orbital electron populations 1.69623 1.06002 1.28407 1.49445 1.25335 0.95680 0.99942 0.96862 0.85752 0.79657 0.80820 0.77814 1.19151 1.20614 1.20626 1.19773 0.93470 0.81976 1.48102 0.87643 1.41796 1.09507 1.04443 1.62712 1.19754 0.88284 0.84993 0.85450 1.90489 1.13760 1.86871 1.57322 1.20799 0.91203 0.84807 1.03155 1.44706 1.11265 1.03031 1.78830 1.15160 0.83769 0.79590 0.77669 1.90906 1.13485 1.83825 1.59228 1.48508 1.07153 1.06137 1.79067 1.23007 0.81999 0.96472 1.00570 1.23114 0.95247 0.94545 1.00722 1.21710 0.94345 0.93782 1.00027 1.22451 0.96384 0.96504 1.00402 1.22513 0.96977 0.95450 1.01449 1.22362 0.95157 0.99008 0.99783 1.22204 0.99093 0.94807 0.99776 1.22815 0.97093 0.79012 1.00240 0.91646 0.76999 0.90007 0.90003 0.75640 0.90468 0.89959 0.87721 0.90469 0.91246 0.91488 0.91636 0.91733 0.91937 0.91674 0.91732 0.91362 0.90250 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.12 13.05 55.50 0.72 -23.39 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.55 -13.88 5.29 -10.96 -0.06 -13.94 16 10 C 0.43 10.12 7.85 -10.99 -0.09 10.04 16 11 O -0.60 -15.61 15.24 5.54 0.08 -15.52 16 12 C 0.13 2.52 6.15 -5.19 -0.03 2.49 16 13 N -0.72 -13.21 5.53 -66.41 -0.37 -13.58 16 14 C 0.74 13.28 8.79 -86.92 -0.76 12.52 16 15 O -0.60 -12.73 17.12 5.28 0.09 -12.64 16 16 N -0.67 -9.16 3.69 -191.16 -0.71 -9.87 16 17 C 0.10 1.01 7.85 -8.63 -0.07 0.94 16 18 C -0.12 -0.92 3.24 -90.24 -0.29 -1.21 16 19 C -0.08 -0.49 2.77 -89.50 -0.25 -0.74 16 20 C -0.12 -0.71 6.37 -25.03 -0.16 -0.87 16 21 C -0.13 -0.70 6.91 -24.70 -0.17 -0.87 16 22 C -0.13 -0.70 6.83 -25.07 -0.17 -0.87 16 23 C -0.12 -0.70 6.17 -25.61 -0.16 -0.86 16 24 C 0.13 1.34 7.40 -8.50 -0.06 1.27 16 25 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.40 9.63 7.90 -40.82 -0.32 9.30 16 27 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 28 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 29 H 0.41 7.30 7.15 -40.82 -0.29 7.01 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.71 7.94 -51.93 -0.41 0.29 16 32 H 0.10 0.84 7.97 -51.93 -0.41 0.43 16 33 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 34 H 0.07 0.43 7.74 -51.93 -0.40 0.03 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.41 7.26 -51.93 -0.38 0.04 16 42 H 0.08 0.71 8.10 -51.93 -0.42 0.28 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 355.18 15.07 5.35 5.35 Total: -1.00 -32.61 355.18 -9.15 -41.76 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -6.79 Total: 12.27 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: -2.45 Total: 13.91 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.41 Total: -60.77 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: 0.17 Total: -28.17 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.61 -9.15 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377018407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.777 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds