Wall clock time and date at job start Tue Mar 31 2020 04:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99640 * 2 1 4 4 H 1.48499 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47126 * 299.99947 * 3 2 1 6 6 H 1.48496 * 109.47151 * 59.99671 * 3 2 1 7 7 C 1.38947 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99931 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00030 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99977 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.46923 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99953 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00097 * 180.27545 * 14 13 12 17 17 C 1.47071 * 136.05574 * 359.36381 * 16 14 13 18 18 C 1.53242 * 88.08077 * 207.20007 * 17 16 14 19 19 C 1.52998 * 114.32360 * 220.46916 * 18 17 16 20 20 C 1.54269 * 110.03446 * 271.66587 * 19 18 17 21 21 C 1.54961 * 104.16230 * 217.13952 * 20 19 18 22 22 C 1.54893 * 102.77835 * 37.88242 * 21 20 19 23 23 C 1.53882 * 110.03390 * 154.44572 * 19 18 17 24 24 C 1.47068 * 136.05956 * 179.72548 * 16 14 13 25 25 H 0.96990 * 120.00229 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00482 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47477 * 59.99807 * 12 10 9 28 28 H 1.08997 * 109.47150 * 299.99702 * 12 10 9 29 29 H 0.97000 * 120.00410 * 0.02562 * 13 12 10 30 30 H 1.09003 * 113.46733 * 321.92543 * 17 16 14 31 31 H 1.09001 * 113.47022 * 92.37268 * 17 16 14 32 32 H 1.08998 * 114.01968 * 87.71123 * 18 17 16 33 33 H 1.09002 * 110.01996 * 33.05406 * 19 18 17 34 34 H 1.09004 * 110.47942 * 335.78410 * 20 19 18 35 35 H 1.09003 * 110.48669 * 98.42723 * 20 19 18 36 36 H 1.09005 * 110.72010 * 279.57043 * 21 20 19 37 37 H 1.08998 * 110.92591 * 156.29402 * 21 20 19 38 38 H 1.08996 * 110.48601 * 203.40870 * 22 21 20 39 39 H 1.09001 * 110.59691 * 80.82121 * 22 21 20 40 40 H 1.08996 * 110.03607 * 238.56773 * 23 19 18 41 41 H 1.08995 * 110.02898 * 0.02562 * 23 19 18 42 42 H 1.09001 * 113.46879 * 267.62846 * 24 16 14 43 43 H 1.08999 * 113.46815 * 38.06610 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2105 -3.5577 -0.0001 12 6 1.2441 -4.8629 -0.0011 13 7 2.1962 -5.9763 -0.0016 14 6 1.7470 -7.2471 -0.0017 15 8 0.5516 -7.4693 -0.0018 16 7 2.6228 -8.2714 0.0035 17 6 4.0867 -8.4130 -0.0015 18 6 3.9015 -9.7700 -0.6891 19 6 4.8409 -10.8664 -0.1829 20 6 6.1597 -10.8434 -0.9830 21 6 6.5391 -12.3385 -1.1317 22 6 5.1654 -13.0206 -1.3481 23 6 4.2091 -12.2503 -0.4144 24 6 2.5354 -9.7395 0.0101 25 1 -0.4850 0.8399 -0.0004 26 1 0.3535 -2.3907 -0.0005 27 1 0.6177 -4.9205 -0.8913 28 1 0.6171 -4.9209 0.8886 29 1 3.1498 -5.7991 -0.0012 30 1 4.5919 -7.6768 -0.6267 31 1 4.5190 -8.4874 0.9963 32 1 3.8485 -9.7129 -1.7763 33 1 5.0454 -10.7221 0.8780 34 1 6.0038 -10.3904 -1.9622 35 1 6.9312 -10.3062 -0.4315 36 1 7.0149 -12.7078 -0.2231 37 1 7.1868 -12.4918 -1.9948 38 1 5.2123 -14.0716 -1.0631 39 1 4.8473 -12.9216 -2.3859 40 1 4.1077 -12.7779 0.5340 41 1 3.2334 -12.1407 -0.8877 42 1 2.5503 -10.1707 1.0111 43 1 1.7241 -10.1288 -0.6050 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377018407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:11 Heat of formation + Delta-G solvation = -67.476419 kcal Electronic energy + Delta-G solvation = -23119.615362 eV Core-core repulsion = 19585.370104 eV Total energy + Delta-G solvation = -3534.245258 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.76094 -40.49193 -39.57335 -37.90845 -36.25808 -35.28206 -33.40083 -31.96590 -29.61547 -29.46419 -27.79353 -26.90085 -26.07143 -22.93026 -21.45298 -21.39027 -20.88437 -20.33192 -20.07633 -19.08806 -17.60826 -17.24770 -17.14240 -16.70782 -16.46065 -16.42534 -15.94351 -15.58847 -15.28447 -14.78640 -14.59661 -14.30040 -14.10854 -13.95746 -13.63667 -13.56094 -13.51316 -12.93035 -12.76713 -12.46305 -12.45115 -12.11678 -11.93124 -11.84344 -11.79685 -11.59561 -11.42716 -11.24471 -11.17141 -11.08787 -10.58729 -10.38037 -10.11477 -9.58829 -8.52264 -6.02775 1.34281 1.34661 1.43348 1.57387 1.86715 2.04708 2.26807 2.79637 3.12950 3.14613 3.26269 3.79013 3.80455 3.99611 4.06077 4.17091 4.26545 4.37094 4.41310 4.45635 4.53375 4.59683 4.63193 4.69646 4.76478 4.79031 4.83712 4.95438 4.97166 5.12637 5.18525 5.26822 5.31333 5.37542 5.39192 5.46351 5.57988 5.63091 5.90464 6.16491 6.46062 6.93060 7.01750 7.38695 7.47641 7.91879 8.64923 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.034621 B = 0.002385 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.552096 B =11737.277266 C =12425.329880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.722 5.722 14 C 0.730 3.270 15 O -0.635 6.635 16 N -0.675 5.675 17 C 0.099 3.901 18 C -0.094 4.094 19 C -0.073 4.073 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.121 4.121 24 C 0.126 3.874 25 H 0.280 0.720 26 H 0.399 0.601 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.408 0.592 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.445 -24.049 -0.989 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.213 4.213 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.379 5.379 14 C 0.433 3.567 15 O -0.518 6.518 16 N -0.414 5.414 17 C -0.023 4.023 18 C -0.113 4.113 19 C -0.092 4.092 20 C -0.158 4.158 21 C -0.163 4.163 22 C -0.164 4.164 23 C -0.159 4.159 24 C 0.004 3.996 25 H 0.090 0.910 26 H 0.233 0.767 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.245 0.755 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.115 0.885 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.057 -23.827 -0.982 25.881 hybrid contribution -0.135 1.188 0.022 1.196 sum 9.922 -22.639 -0.960 24.737 Atomic orbital electron populations 1.69688 1.07038 1.29629 1.49246 1.26170 0.96575 1.02774 0.95756 0.84782 0.78106 0.76569 0.78329 1.19383 1.19584 1.19602 1.19776 0.92965 0.83446 1.50355 0.89531 1.41840 1.09617 1.04575 1.63352 1.20342 0.88085 0.85812 0.83637 1.90463 1.15136 1.87526 1.58064 1.20602 0.90969 0.83111 1.03994 1.44632 1.10956 1.03072 1.79274 1.15302 0.83843 0.79979 0.77610 1.90866 1.15351 1.84441 1.61107 1.48697 1.08651 1.06695 1.77336 1.23307 0.79617 0.97440 1.01941 1.22966 0.94010 0.93957 1.00356 1.21680 0.93919 0.93155 1.00439 1.22458 0.96266 0.96902 1.00204 1.22516 0.96988 0.95050 1.01767 1.22373 0.95114 0.99340 0.99578 1.22210 0.98934 0.94589 1.00169 1.23128 0.98195 0.76786 1.01520 0.91031 0.76675 0.89126 0.89093 0.75463 0.90517 0.88127 0.87823 0.89640 0.91621 0.91117 0.91241 0.91533 0.91423 0.91979 0.91067 0.91682 0.88506 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.09 13.05 21.66 0.28 -48.81 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 1.00 41.98 29.55 68.60 2.03 44.00 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 7 C -0.34 -18.72 9.68 84.04 0.81 -17.90 16 8 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 9 N -0.56 -28.62 5.29 -306.98 -1.62 -30.24 16 10 C 0.43 20.67 7.85 87.66 0.69 21.36 16 11 O -0.62 -32.95 15.24 -3.08 -0.05 -33.00 16 12 C 0.14 5.55 6.15 85.63 0.53 6.08 16 13 N -0.72 -26.32 5.53 -482.29 -2.67 -28.99 16 14 C 0.73 26.16 8.79 179.06 1.57 27.74 16 15 O -0.64 -27.24 17.12 -4.01 -0.07 -27.31 16 16 N -0.68 -17.83 3.69 -876.96 -3.24 -21.07 16 17 C 0.10 1.77 7.85 83.09 0.65 2.42 16 18 C -0.09 -1.29 3.24 -10.55 -0.03 -1.33 16 19 C -0.07 -0.72 2.77 -10.07 -0.03 -0.75 16 20 C -0.12 -1.18 6.37 31.70 0.20 -0.98 16 21 C -0.13 -1.14 6.91 31.91 0.22 -0.91 16 22 C -0.13 -1.17 6.83 31.67 0.22 -0.96 16 23 C -0.12 -1.15 6.17 31.32 0.19 -0.96 16 24 C 0.13 2.36 7.40 83.18 0.62 2.98 16 25 H 0.28 13.98 8.31 -92.72 -0.77 13.21 16 26 H 0.40 19.68 7.90 -92.71 -0.73 18.94 16 27 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 28 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 29 H 0.41 14.59 7.15 -92.71 -0.66 13.92 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.10 1.48 7.94 -2.39 -0.02 1.46 16 32 H 0.10 1.50 7.97 -2.39 -0.02 1.48 16 33 H 0.09 0.76 7.92 -2.39 -0.02 0.74 16 34 H 0.07 0.70 7.74 -2.39 -0.02 0.68 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.06 0.67 7.26 -2.39 -0.02 0.65 16 42 H 0.10 1.51 8.10 -2.39 -0.02 1.49 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -69.54 355.18 0.40 -69.14 By element: Atomic # 1 Polarization: 40.02 SS G_CDS: -0.37 Total: 39.64 kcal Atomic # 6 Polarization: 30.52 SS G_CDS: 6.11 Total: 36.62 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -7.25 Total: -129.11 kcal Atomic # 8 Polarization: -60.19 SS G_CDS: -0.12 Total: -60.31 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -69.54 0.40 -69.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377018407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.665 kcal (2) G-P(sol) polarization free energy of solvation -69.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds