Wall clock time and date at job start Tue Mar 31 2020 04:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 119.99509 * 2 1 4 4 H 1.48503 * 109.47074 * 240.00288 * 3 2 1 5 5 H 1.48492 * 109.47355 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46651 * 120.00558 * 3 2 1 7 7 C 1.38946 * 120.00386 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00488 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00011 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99902 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00120 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47160 * 180.02562 * 12 10 9 14 14 C 1.34780 * 119.99818 * 179.97438 * 13 12 10 15 15 O 1.21588 * 120.00042 * 5.02855 * 14 13 12 16 16 N 1.34600 * 119.99961 * 185.02110 * 14 13 12 17 17 C 1.47265 * 122.39362 * 354.89449 * 16 14 13 18 18 C 1.52575 * 108.56744 * 119.29302 * 17 16 14 19 19 C 1.51939 * 112.84088 * 51.31658 * 18 17 16 20 20 C 1.51927 * 113.92019 * 313.44357 * 19 18 17 21 21 C 1.47260 * 122.39202 * 174.84550 * 16 14 13 22 22 C 1.52602 * 108.55939 * 119.52111 * 21 16 14 23 23 C 1.51992 * 112.64424 * 51.76809 * 22 21 16 24 24 C 1.51984 * 113.61811 * 312.47548 * 23 22 21 25 25 H 0.96998 * 120.00538 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00173 * 0.02562 * 9 7 2 27 27 H 1.09008 * 109.47395 * 60.00095 * 12 10 9 28 28 H 1.09002 * 109.47574 * 300.00390 * 12 10 9 29 29 H 0.96994 * 120.00426 * 0.02562 * 13 12 10 30 30 H 1.10135 * 109.22522 * 359.77486 * 17 16 14 31 31 H 1.09754 * 109.11063 * 289.68826 * 18 17 16 32 32 H 1.09792 * 109.03141 * 172.79076 * 18 17 16 33 33 H 1.08673 * 111.01067 * 79.68373 * 19 18 17 34 34 H 1.10944 * 107.46062 * 194.50403 * 19 18 17 35 35 H 1.09819 * 109.12225 * 167.74933 * 20 19 18 36 36 H 1.09757 * 109.23030 * 284.70148 * 20 19 18 37 37 H 1.10142 * 109.22766 * 0.03139 * 21 16 14 38 38 H 1.09731 * 109.10873 * 290.33420 * 22 21 16 39 39 H 1.09722 * 109.11370 * 173.26104 * 22 21 16 40 40 H 1.10833 * 107.58707 * 193.47112 * 23 22 21 41 41 H 1.08637 * 110.96986 * 78.39118 * 23 22 21 42 42 H 1.09748 * 109.16558 * 285.83844 * 24 23 22 43 43 H 1.09742 * 109.18562 * 168.75046 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6966 -1.2126 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2441 -4.8629 -0.0022 13 7 2.1961 -5.9764 -0.0027 14 6 1.7469 -7.2471 -0.0027 15 8 0.5553 -7.4706 -0.0946 16 7 2.6174 -8.2687 0.0989 17 6 4.0759 -8.0650 0.1022 18 6 4.6363 -8.5865 1.4220 19 6 4.1853 -10.0031 1.7355 20 6 2.6972 -10.2345 1.5349 21 6 2.1793 -9.6697 0.2157 22 6 2.7326 -10.4522 -0.9719 23 6 4.2307 -10.2662 -1.1485 24 6 4.6758 -8.8144 -1.0838 25 1 -0.4851 0.8400 0.0004 26 1 0.3535 -2.3906 -0.0005 27 1 0.6170 -4.9201 -0.8920 28 1 0.6177 -4.9213 0.8880 29 1 3.1497 -5.7991 -0.0022 30 1 4.2921 -6.9892 0.0075 31 1 4.3223 -7.9188 2.2345 32 1 5.7331 -8.5580 1.3814 33 1 4.7717 -10.7305 1.1804 34 1 4.4112 -10.1955 2.8045 35 1 2.4934 -11.3132 1.5666 36 1 2.1448 -9.7745 2.3643 37 1 1.0787 -9.7079 0.2033 38 1 2.2187 -10.1290 -1.8859 39 1 2.5147 -11.5185 -0.8325 40 1 4.5007 -10.6552 -2.1506 41 1 4.7844 -10.8752 -0.4395 42 1 4.3867 -8.3071 -2.0131 43 1 5.7705 -8.7754 -1.0164 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588746748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:54 Heat of formation + Delta-G solvation = -75.295021 kcal Electronic energy + Delta-G solvation = -24553.680534 eV Core-core repulsion = 21019.096236 eV Total energy + Delta-G solvation = -3534.584298 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.90948 -38.77696 -37.83130 -34.51714 -33.83000 -33.12229 -32.71016 -32.61625 -31.33832 -27.65260 -26.37369 -25.65645 -24.33145 -22.14288 -21.17533 -20.91534 -19.62410 -18.76039 -17.97630 -17.40510 -16.02420 -15.58225 -15.44988 -15.38870 -14.91014 -14.44781 -14.37349 -14.17179 -13.86320 -13.68837 -13.67321 -13.65649 -13.42678 -13.15207 -12.14748 -12.10620 -11.90051 -11.67617 -11.62265 -11.60839 -11.20282 -11.15722 -11.09097 -10.60765 -10.49669 -10.37088 -10.29663 -10.03059 -9.82760 -9.60888 -8.83762 -8.60010 -8.30579 -8.07888 -6.49459 -3.91542 2.75076 3.14876 3.22459 3.26327 3.43364 3.77602 4.01146 4.16185 4.45033 4.58140 4.65444 4.69766 4.79257 4.91375 4.96552 4.97737 5.05226 5.19235 5.21727 5.34711 5.48498 5.63972 5.67333 5.74807 5.77657 5.81021 5.84583 5.90148 5.90875 5.96082 6.01854 6.04925 6.08355 6.11780 6.37308 6.58522 6.82240 7.22117 7.47435 7.94259 8.24857 8.47527 8.86292 9.06428 9.41739 9.89777 10.67424 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.031341 B = 0.003165 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.174341 B = 8845.188722 C = 9175.591408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.128 3.872 13 N -0.726 5.726 14 C 0.714 3.286 15 O -0.599 6.599 16 N -0.622 5.622 17 C 0.142 3.858 18 C -0.124 4.124 19 C -0.112 4.112 20 C -0.123 4.123 21 C 0.161 3.839 22 C -0.123 4.123 23 C -0.112 4.112 24 C -0.124 4.124 25 H 0.275 0.725 26 H 0.396 0.604 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.405 0.595 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.095 -20.405 0.848 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.122 0.878 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.385 5.385 14 C 0.416 3.584 15 O -0.478 6.478 16 N -0.359 5.359 17 C 0.037 3.963 18 C -0.163 4.163 19 C -0.149 4.149 20 C -0.161 4.161 21 C 0.057 3.943 22 C -0.162 4.162 23 C -0.150 4.150 24 C -0.162 4.162 25 H 0.085 0.915 26 H 0.230 0.770 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.245 0.755 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.848 -20.315 0.793 21.453 hybrid contribution 0.278 1.015 -0.001 1.053 sum 7.126 -19.300 0.792 20.588 Atomic orbital electron populations 1.69607 1.06001 1.28606 1.49312 1.25318 0.95656 0.99897 0.96820 0.85876 0.78775 0.80196 0.79133 1.19787 1.20866 1.19796 1.19676 0.93421 0.82035 1.48347 0.87756 1.41779 1.09483 1.04424 1.62700 1.19771 0.88286 0.85020 0.85421 1.90479 1.13784 1.86894 1.57389 1.20777 0.91282 0.84918 1.03065 1.44918 1.11157 1.03330 1.79087 1.15600 0.84633 0.80397 0.77795 1.90881 1.14230 1.83927 1.58760 1.47360 1.05234 1.05626 1.77698 1.21222 0.80348 1.00004 0.94698 1.21630 1.00625 0.96910 0.97096 1.21165 0.95761 0.96532 1.01436 1.21635 0.96151 1.00906 0.97454 1.21012 1.00260 0.79409 0.93592 1.21643 0.95963 0.99941 0.98606 1.21185 0.95741 0.96111 1.01940 1.21630 1.00453 0.95900 0.98237 0.91549 0.77012 0.90018 0.90166 0.75541 0.89195 0.91639 0.91007 0.91393 0.92973 0.91196 0.91879 0.88187 0.91837 0.91210 0.92955 0.91344 0.91738 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.31 -8.35 9.68 -14.94 -0.14 -8.50 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.78 5.29 -10.97 -0.06 -13.84 16 10 C 0.43 10.03 7.85 -10.99 -0.09 9.94 16 11 O -0.60 -15.45 15.24 5.55 0.08 -15.37 16 12 C 0.13 2.48 6.16 -5.20 -0.03 2.44 16 13 N -0.73 -12.99 5.46 -66.46 -0.36 -13.36 16 14 C 0.71 12.46 8.36 -87.07 -0.73 11.73 16 15 O -0.60 -12.23 15.91 5.29 0.08 -12.15 16 16 N -0.62 -8.41 2.51 -163.17 -0.41 -8.82 16 17 C 0.14 1.58 3.21 -67.95 -0.22 1.37 16 18 C -0.12 -1.18 5.45 -27.49 -0.15 -1.33 16 19 C -0.11 -0.92 4.96 -27.82 -0.14 -1.06 16 20 C -0.12 -1.14 5.45 -27.50 -0.15 -1.29 16 21 C 0.16 1.83 3.22 -67.94 -0.22 1.61 16 22 C -0.12 -1.14 5.46 -27.45 -0.15 -1.29 16 23 C -0.11 -0.93 4.99 -27.76 -0.14 -1.06 16 24 C -0.12 -1.16 5.45 -27.47 -0.15 -1.31 16 25 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.40 9.58 7.90 -40.82 -0.32 9.26 16 27 H 0.08 1.54 8.14 -51.92 -0.42 1.11 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.40 7.11 5.03 -40.82 -0.21 6.90 16 30 H 0.09 1.11 5.81 -51.28 -0.30 0.81 16 31 H 0.06 0.71 8.20 -51.50 -0.42 0.28 16 32 H 0.07 0.57 8.21 -51.48 -0.42 0.15 16 33 H 0.07 0.48 5.65 -52.11 -0.29 0.19 16 34 H 0.05 0.40 8.29 -50.81 -0.42 -0.02 16 35 H 0.07 0.51 8.21 -51.46 -0.42 0.09 16 36 H 0.06 0.66 8.21 -51.50 -0.42 0.24 16 37 H 0.10 1.32 7.20 -51.28 -0.37 0.95 16 38 H 0.06 0.67 8.20 -51.51 -0.42 0.25 16 39 H 0.07 0.52 8.20 -51.52 -0.42 0.09 16 40 H 0.05 0.40 8.29 -50.88 -0.42 -0.02 16 41 H 0.07 0.48 5.59 -52.13 -0.29 0.19 16 42 H 0.06 0.68 8.20 -51.50 -0.42 0.26 16 43 H 0.07 0.56 8.20 -51.51 -0.42 0.14 16 LS Contribution 335.22 15.07 5.05 5.05 Total: -1.00 -31.41 335.22 -8.67 -40.08 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -6.36 Total: 14.31 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: -2.40 Total: 11.83 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.11 Total: -59.36 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: 0.17 Total: -27.52 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.41 -8.67 -40.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588746748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.214 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds