Wall clock time and date at job start Tue Mar 31 2020 04:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00101 * 2 1 4 4 H 1.48498 * 109.47392 * 239.99768 * 3 2 1 5 5 H 1.48497 * 109.46878 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47180 * 119.99727 * 3 2 1 7 7 C 1.37877 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00594 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99919 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.53248 * 60.09647 * 9 7 2 11 11 C 1.53120 * 109.50009 * 299.99707 * 9 7 2 12 12 C 1.53123 * 109.21163 * 182.43636 * 11 9 7 13 13 C 1.53039 * 109.27546 * 57.62218 * 12 11 9 14 14 N 1.46842 * 109.52666 * 300.81951 * 13 12 11 15 15 C 1.46892 * 111.00192 * 185.84212 * 14 13 12 16 16 C 1.53003 * 109.47390 * 293.95474 * 15 14 13 17 17 C 1.52994 * 109.47262 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.46998 * 179.97438 * 17 16 15 19 19 C 1.34772 * 124.18340 * 269.72609 * 18 17 16 20 20 O 1.21234 * 127.15081 * 0.02562 * 19 18 17 21 21 C 1.51582 * 105.68488 * 179.97438 * 19 18 17 22 22 N 1.47304 * 103.59609 * 0.32308 * 21 19 18 23 23 C 1.33794 * 124.17652 * 90.02329 * 18 17 16 24 24 O 1.21542 * 123.77089 * 359.96965 * 23 18 17 25 25 C 1.46848 * 111.19688 * 61.74516 * 14 13 12 26 26 H 0.96996 * 120.00390 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.52427 * 62.49909 * 11 9 7 28 28 H 1.08995 * 109.52208 * 302.37228 * 11 9 7 29 29 H 1.08999 * 109.50194 * 177.56161 * 12 11 9 30 30 H 1.09002 * 109.50248 * 297.64565 * 12 11 9 31 31 H 1.08997 * 109.46051 * 60.83848 * 13 12 11 32 32 H 1.09006 * 109.46001 * 180.81597 * 13 12 11 33 33 H 1.08997 * 109.47341 * 53.95882 * 15 14 13 34 34 H 1.09004 * 109.47377 * 173.95469 * 15 14 13 35 35 H 1.09001 * 109.46681 * 299.99976 * 16 15 14 36 36 H 1.08991 * 109.46656 * 59.99603 * 16 15 14 37 37 H 1.08992 * 109.47416 * 299.99876 * 17 16 15 38 38 H 1.09004 * 109.47438 * 60.00036 * 17 16 15 39 39 H 1.08998 * 110.76343 * 241.71263 * 21 19 18 40 40 H 1.09001 * 110.56205 * 118.83519 * 21 19 18 41 41 H 0.96999 * 126.68877 * 179.84503 * 22 21 19 42 42 H 1.08999 * 109.46555 * 58.27446 * 25 14 13 43 43 H 1.08998 * 109.46337 * 178.25654 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6256 -2.5589 -0.8902 11 6 0.3700 -2.5808 1.2502 12 6 -0.3457 -3.9342 1.2747 13 6 0.6944 -5.0564 1.2433 14 7 1.5101 -4.9357 0.0283 15 6 2.4274 -6.0752 -0.1053 16 6 3.4548 -6.0384 1.0279 17 6 4.4099 -7.2256 0.8891 18 7 5.3939 -7.1900 1.9738 19 6 6.5816 -6.5574 1.8982 20 8 7.0203 -5.9338 0.9557 21 6 7.2540 -6.7869 3.2372 22 7 6.2789 -7.6049 3.9787 23 6 5.2271 -7.7862 3.1598 24 8 4.2367 -8.4223 3.4629 25 6 2.2438 -3.6639 0.0054 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3679 -1.7788 1.2287 28 1 0.9907 -2.4808 2.1406 29 1 -0.9407 -4.0148 2.1844 30 1 -0.9975 -4.0170 0.4049 31 1 1.3366 -4.9809 2.1208 32 1 0.1876 -6.0215 1.2460 33 1 1.8616 -7.0053 -0.0527 34 1 2.9421 -6.0169 -1.0644 35 1 4.0207 -5.1083 0.9752 36 1 2.9402 -6.0967 1.9868 37 1 3.8438 -8.1555 0.9421 38 1 4.9246 -7.1677 -0.0700 39 1 7.4288 -5.8405 3.7490 40 1 8.1902 -7.3299 3.1074 41 1 6.3757 -7.9451 4.8819 42 1 2.8788 -3.5950 0.8887 43 1 2.8622 -3.6174 -0.8910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595613758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:22 Heat of formation + Delta-G solvation = -47.331717 kcal Electronic energy + Delta-G solvation = -24410.596812 eV Core-core repulsion = 20877.225094 eV Total energy + Delta-G solvation = -3533.371718 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.54167 -38.79578 -38.56450 -36.33766 -35.74956 -33.97774 -32.26143 -30.29654 -29.81037 -28.03491 -25.83586 -24.91266 -23.41273 -23.06921 -21.49407 -20.82504 -20.59826 -18.32358 -18.29525 -17.30365 -16.96947 -16.39163 -15.81214 -15.52733 -15.02960 -14.76829 -14.47024 -14.40237 -14.19559 -14.17134 -13.98622 -13.47927 -12.95241 -12.54359 -12.44507 -12.01949 -11.88954 -11.70964 -11.37045 -11.16471 -10.98492 -10.85623 -10.63799 -10.52062 -10.36294 -10.03202 -9.99536 -9.82455 -9.77526 -9.42113 -9.00116 -8.67299 -8.26855 -7.60892 -5.93992 -4.00130 1.37028 1.94874 2.74702 2.83585 3.34306 3.38855 3.41521 3.69416 4.41953 4.46923 4.58857 4.61832 4.80106 4.95590 5.14102 5.18211 5.30236 5.35850 5.46994 5.64696 5.72278 5.86072 5.89011 6.02210 6.13100 6.31346 6.36074 6.40515 6.47275 6.56464 6.76423 6.78154 6.80284 7.01488 7.11405 7.25645 7.43818 7.69556 7.78439 7.83382 7.86009 8.12328 8.21295 8.51949 9.03743 9.63935 11.11968 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.016994 B = 0.003863 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.283387 B = 7245.768598 C = 8155.760576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.054 3.946 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.061 3.939 14 N -0.533 5.533 15 C 0.061 3.939 16 C -0.176 4.176 17 C 0.124 3.876 18 N -0.575 5.575 19 C 0.518 3.482 20 O -0.463 6.463 21 C 0.062 3.938 22 N -0.732 5.732 23 C 0.700 3.300 24 O -0.541 6.541 25 C 0.065 3.935 26 H 0.260 0.740 27 H 0.090 0.910 28 H 0.028 0.972 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.024 0.976 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.440 0.560 42 H 0.021 0.979 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.315 -16.264 6.979 21.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.035 3.965 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.156 4.156 13 C -0.067 4.067 14 N -0.256 5.256 15 C -0.068 4.068 16 C -0.216 4.216 17 C 0.003 3.997 18 N -0.322 5.322 19 C 0.304 3.696 20 O -0.332 6.332 21 C -0.066 4.066 22 N -0.397 5.397 23 C 0.401 3.599 24 O -0.414 6.414 25 C -0.062 4.062 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.285 0.715 42 H 0.039 0.961 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.466 -16.117 6.099 20.698 hybrid contribution 1.201 0.845 1.268 1.940 sum 12.667 -15.272 7.367 21.165 Atomic orbital electron populations 1.69875 1.05829 1.26387 1.50649 1.24922 0.94809 0.98886 0.95154 0.86703 0.79627 0.83361 0.78548 1.20275 1.21314 1.20446 1.21112 0.92757 0.90718 1.50745 0.92966 1.18669 0.92638 0.90328 0.94826 0.94804 1.21647 1.00020 0.94746 0.98413 1.21684 0.97225 0.96505 1.00181 1.22048 0.95501 0.98707 0.90447 1.62245 1.23167 1.02462 1.37692 1.22108 0.92611 0.95240 0.96870 1.22692 0.98537 0.98227 1.02174 1.21742 0.89239 1.01023 0.87738 1.46474 1.19872 1.49642 1.16170 1.20904 0.81335 0.77762 0.89553 1.90860 1.68130 1.37296 1.36932 1.22476 0.94458 0.99032 0.90638 1.45431 1.18630 1.57380 1.18239 1.15908 0.83712 0.79697 0.80591 1.91029 1.30014 1.43720 1.76677 1.22335 0.96494 0.88555 0.98779 0.93028 0.89125 0.95334 0.93601 0.92080 0.95772 0.92408 0.91155 0.90757 0.90682 0.91143 0.88615 0.88630 0.85827 0.85967 0.71542 0.96082 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 11.35 55.43 0.63 -25.00 16 2 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.32 8.57 -34.44 -0.30 -14.61 16 8 H 0.05 1.44 7.75 -52.48 -0.41 1.03 16 9 C 0.05 1.38 2.27 -91.68 -0.21 1.17 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.66 5.02 -26.61 -0.13 -2.80 16 12 C -0.12 -2.38 6.10 -26.65 -0.16 -2.54 16 13 C 0.06 1.10 5.05 -3.84 -0.02 1.08 16 14 N -0.53 -9.93 4.86 -234.67 -1.14 -11.07 16 15 C 0.06 0.89 5.36 -3.83 -0.02 0.87 16 16 C -0.18 -2.46 4.84 -26.73 -0.13 -2.59 16 17 C 0.12 1.41 5.70 -4.05 -0.02 1.38 16 18 N -0.58 -6.39 2.60 -120.73 -0.31 -6.71 16 19 C 0.52 5.31 8.32 -10.55 -0.09 5.22 16 20 O -0.46 -6.28 17.75 5.60 0.10 -6.18 16 21 C 0.06 0.33 7.97 -4.32 -0.03 0.30 16 22 N -0.73 -4.90 6.58 -65.74 -0.43 -5.34 16 23 C 0.70 7.85 8.62 -88.02 -0.76 7.09 16 24 O -0.54 -8.03 17.48 5.33 0.09 -7.93 16 25 C 0.07 1.40 4.06 -3.83 -0.02 1.39 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.02 0.45 6.75 -51.93 -0.35 0.09 16 32 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 33 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.20 6.51 -51.93 -0.34 0.86 16 36 H 0.07 1.08 6.68 -51.93 -0.35 0.73 16 37 H 0.10 1.02 7.86 -51.93 -0.41 0.61 16 38 H 0.10 1.00 8.00 -51.93 -0.42 0.58 16 39 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.12 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.44 1.82 8.96 -40.82 -0.37 1.46 16 42 H 0.02 0.46 6.61 -51.93 -0.34 0.12 16 43 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -33.49 343.47 -9.54 -43.03 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.65 Total: -0.11 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.98 Total: -2.35 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -1.26 Total: -48.11 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.19 Total: -14.12 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.49 -9.54 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.303 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds