Wall clock time and date at job start Tue Mar 31 2020 04:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00101 * 2 1 4 4 H 1.48498 * 109.47392 * 239.99768 * 3 2 1 5 5 H 1.48497 * 109.46878 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47180 * 119.99727 * 3 2 1 7 7 C 1.37877 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00594 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99919 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.53248 * 60.09647 * 9 7 2 11 11 C 1.53120 * 109.50009 * 299.99707 * 9 7 2 12 12 C 1.53123 * 109.21163 * 182.43636 * 11 9 7 13 13 C 1.53039 * 109.27546 * 57.62218 * 12 11 9 14 14 N 1.46842 * 109.52666 * 300.81951 * 13 12 11 15 15 C 1.46892 * 111.00192 * 185.84212 * 14 13 12 16 16 C 1.53003 * 109.47390 * 293.95474 * 15 14 13 17 17 C 1.52994 * 109.47262 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.46998 * 179.97438 * 17 16 15 19 19 C 1.34772 * 124.18340 * 269.72609 * 18 17 16 20 20 O 1.21234 * 127.15081 * 0.02562 * 19 18 17 21 21 C 1.51582 * 105.68488 * 179.97438 * 19 18 17 22 22 N 1.47304 * 103.59609 * 0.32308 * 21 19 18 23 23 C 1.33794 * 124.17652 * 90.02329 * 18 17 16 24 24 O 1.21542 * 123.77089 * 359.96965 * 23 18 17 25 25 C 1.46848 * 111.19688 * 61.74516 * 14 13 12 26 26 H 0.96996 * 120.00390 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.52427 * 62.49909 * 11 9 7 28 28 H 1.08995 * 109.52208 * 302.37228 * 11 9 7 29 29 H 1.08999 * 109.50194 * 177.56161 * 12 11 9 30 30 H 1.09002 * 109.50248 * 297.64565 * 12 11 9 31 31 H 1.08997 * 109.46051 * 60.83848 * 13 12 11 32 32 H 1.09006 * 109.46001 * 180.81597 * 13 12 11 33 33 H 1.08997 * 109.47341 * 53.95882 * 15 14 13 34 34 H 1.09004 * 109.47377 * 173.95469 * 15 14 13 35 35 H 1.09001 * 109.46681 * 299.99976 * 16 15 14 36 36 H 1.08991 * 109.46656 * 59.99603 * 16 15 14 37 37 H 1.08992 * 109.47416 * 299.99876 * 17 16 15 38 38 H 1.09004 * 109.47438 * 60.00036 * 17 16 15 39 39 H 1.08998 * 110.76343 * 241.71263 * 21 19 18 40 40 H 1.09001 * 110.56205 * 118.83519 * 21 19 18 41 41 H 0.96999 * 126.68877 * 179.84503 * 22 21 19 42 42 H 1.08999 * 109.46555 * 58.27446 * 25 14 13 43 43 H 1.08998 * 109.46337 * 178.25654 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6256 -2.5589 -0.8902 11 6 0.3700 -2.5808 1.2502 12 6 -0.3457 -3.9342 1.2747 13 6 0.6944 -5.0564 1.2433 14 7 1.5101 -4.9357 0.0283 15 6 2.4274 -6.0752 -0.1053 16 6 3.4548 -6.0384 1.0279 17 6 4.4099 -7.2256 0.8891 18 7 5.3939 -7.1900 1.9738 19 6 6.5816 -6.5574 1.8982 20 8 7.0203 -5.9338 0.9557 21 6 7.2540 -6.7869 3.2372 22 7 6.2789 -7.6049 3.9787 23 6 5.2271 -7.7862 3.1598 24 8 4.2367 -8.4223 3.4629 25 6 2.2438 -3.6639 0.0054 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3679 -1.7788 1.2287 28 1 0.9907 -2.4808 2.1406 29 1 -0.9407 -4.0148 2.1844 30 1 -0.9975 -4.0170 0.4049 31 1 1.3366 -4.9809 2.1208 32 1 0.1876 -6.0215 1.2460 33 1 1.8616 -7.0053 -0.0527 34 1 2.9421 -6.0169 -1.0644 35 1 4.0207 -5.1083 0.9752 36 1 2.9402 -6.0967 1.9868 37 1 3.8438 -8.1555 0.9421 38 1 4.9246 -7.1677 -0.0700 39 1 7.4288 -5.8405 3.7490 40 1 8.1902 -7.3299 3.1074 41 1 6.3757 -7.9451 4.8819 42 1 2.8788 -3.5950 0.8887 43 1 2.8622 -3.6174 -0.8910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595613758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:20 Heat of formation + Delta-G solvation = -72.396484 kcal Electronic energy + Delta-G solvation = -24411.683702 eV Core-core repulsion = 20877.225094 eV Total energy + Delta-G solvation = -3534.458608 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.32425 -40.12527 -39.67413 -37.20427 -36.87414 -35.52220 -33.95134 -31.72075 -31.55291 -28.69563 -27.07941 -26.90107 -24.70819 -23.87810 -23.22808 -22.36598 -21.43302 -20.02280 -19.08389 -18.44928 -18.08502 -17.74850 -16.94627 -16.62656 -16.31485 -16.06661 -15.95662 -15.52430 -15.36524 -15.27066 -15.03687 -14.78672 -14.33702 -14.23555 -14.02131 -13.45898 -13.34224 -12.98275 -12.87017 -12.77996 -12.66327 -12.50250 -12.09887 -11.96029 -11.74087 -11.51101 -11.41769 -11.32578 -10.98670 -10.84167 -10.67774 -10.43993 -10.38390 -9.11906 -8.08506 -6.22976 0.59536 1.19577 1.40275 1.41764 1.49531 1.91312 2.26691 2.42114 3.03701 3.12772 3.18136 3.69490 3.85924 4.05370 4.12252 4.20310 4.26638 4.29127 4.32671 4.37716 4.44553 4.56915 4.63011 4.66691 4.72676 4.79740 4.88510 4.91551 5.04282 5.08335 5.16941 5.22527 5.38763 5.51051 5.62056 5.81887 5.95054 6.02414 6.11100 6.19526 6.34712 6.37406 6.44742 6.89138 7.08535 7.44781 8.96024 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.016994 B = 0.003863 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.283387 B = 7245.768598 C = 8155.760576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.048 0.952 9 C 0.051 3.949 10 H -0.003 1.003 11 C -0.103 4.103 12 C -0.112 4.112 13 C 0.066 3.934 14 N -0.544 5.544 15 C 0.062 3.938 16 C -0.162 4.162 17 C 0.126 3.874 18 N -0.582 5.582 19 C 0.509 3.491 20 O -0.504 6.504 21 C 0.074 3.926 22 N -0.710 5.710 23 C 0.694 3.306 24 O -0.584 6.584 25 C 0.083 3.917 26 H 0.261 0.739 27 H 0.058 0.942 28 H 0.018 0.982 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.151 0.849 40 H 0.163 0.837 41 H 0.454 0.546 42 H 0.014 0.986 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.036 -17.488 8.053 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.067 0.933 9 C 0.032 3.968 10 H 0.015 0.985 11 C -0.141 4.141 12 C -0.150 4.150 13 C -0.062 4.062 14 N -0.267 5.267 15 C -0.067 4.067 16 C -0.202 4.202 17 C 0.004 3.996 18 N -0.328 5.328 19 C 0.299 3.701 20 O -0.375 6.375 21 C -0.052 4.052 22 N -0.375 5.375 23 C 0.395 3.605 24 O -0.460 6.460 25 C -0.044 4.044 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.168 0.832 40 H 0.180 0.820 41 H 0.302 0.698 42 H 0.033 0.967 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.231 -17.358 7.209 22.985 hybrid contribution 0.674 1.213 0.928 1.669 sum 13.905 -16.145 8.137 22.808 Atomic orbital electron populations 1.70020 1.07158 1.27164 1.51059 1.25707 0.95662 1.02277 0.94699 0.85691 0.78468 0.79172 0.78802 1.19634 1.20722 1.19751 1.21474 0.92843 0.92276 1.51074 0.93335 1.18607 0.93040 0.91402 0.93735 0.98457 1.21448 0.99061 0.96353 0.97221 1.21604 0.97593 0.94852 1.00946 1.22027 0.94895 0.99120 0.90136 1.62169 1.24019 1.02307 1.38158 1.22208 0.92516 0.94419 0.97510 1.22477 0.98441 0.98200 1.01061 1.21649 0.89285 1.00098 0.88533 1.46567 1.20217 1.49767 1.16226 1.21705 0.81037 0.76544 0.90812 1.90841 1.68881 1.38983 1.38837 1.22710 0.94539 1.00577 0.87421 1.45393 1.17429 1.56369 1.18349 1.16080 0.84093 0.79465 0.80898 1.90998 1.31890 1.45716 1.77444 1.21947 0.95271 0.89023 0.98196 0.93012 0.92315 0.96326 0.91378 0.92862 0.95947 0.89316 0.88575 0.89897 0.93227 0.92506 0.87608 0.87794 0.83153 0.81953 0.69845 0.96741 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.23 11.35 21.45 0.24 -53.99 16 2 C 0.02 0.88 5.30 84.66 0.45 1.33 16 3 Si 0.95 44.61 29.54 68.60 2.03 46.63 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.54 -30.82 8.57 25.60 0.22 -30.60 16 8 H 0.05 2.74 7.75 -2.91 -0.02 2.71 16 9 C 0.05 2.69 2.27 -11.48 -0.03 2.67 16 10 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 11 C -0.10 -5.11 5.02 30.68 0.15 -4.95 16 12 C -0.11 -4.48 6.10 30.65 0.19 -4.30 16 13 C 0.07 2.30 5.05 86.33 0.44 2.74 16 14 N -0.54 -19.93 4.86 -896.36 -4.36 -24.29 16 15 C 0.06 1.72 5.36 86.31 0.46 2.18 16 16 C -0.16 -4.40 4.84 30.59 0.15 -4.25 16 17 C 0.13 2.73 5.70 86.38 0.49 3.22 16 18 N -0.58 -12.19 2.60 -773.13 -2.01 -14.20 16 19 C 0.51 9.61 8.32 87.94 0.73 10.34 16 20 O -0.50 -13.30 17.75 -2.89 -0.05 -13.35 16 21 C 0.07 0.53 7.97 85.76 0.68 1.22 16 22 N -0.71 -7.45 6.58 -480.32 -3.16 -10.61 16 23 C 0.69 14.43 8.62 179.44 1.55 15.97 16 24 O -0.58 -16.76 17.48 -3.85 -0.07 -16.83 16 25 C 0.08 3.66 4.06 86.33 0.35 4.01 16 26 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 27 H 0.06 3.28 6.15 -2.39 -0.01 3.27 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.02 0.80 6.75 -2.39 -0.02 0.78 16 32 H 0.09 2.60 8.06 -2.38 -0.02 2.58 16 33 H 0.10 2.22 8.06 -2.39 -0.02 2.20 16 34 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.05 1.60 6.51 -2.39 -0.02 1.58 16 36 H 0.06 1.70 6.68 -2.39 -0.02 1.69 16 37 H 0.11 2.08 7.86 -2.39 -0.02 2.07 16 38 H 0.10 2.07 8.00 -2.38 -0.02 2.05 16 39 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.16 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.45 2.32 8.96 -92.71 -0.83 1.49 16 42 H 0.01 0.65 6.61 -2.39 -0.02 0.63 16 43 H 0.05 2.38 8.12 -2.39 -0.02 2.36 16 Total: -1.00 -75.92 343.47 -1.36 -77.28 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.19 Total: 9.79 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 5.83 Total: -0.44 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -9.29 Total: -103.09 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.12 Total: -30.18 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -75.92 -1.36 -77.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.883 kcal (2) G-P(sol) polarization free energy of solvation -75.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds