Wall clock time and date at job start Tue Mar 31 2020 04:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48500 * 109.47146 * 240.00439 * 3 2 1 5 5 H 1.48502 * 109.47330 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47125 * 120.00547 * 3 2 1 7 7 C 1.38948 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00235 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99702 * 0.26946 * 7 2 1 10 10 C 1.34778 * 119.99816 * 179.72394 * 9 7 2 11 11 O 1.21289 * 119.99844 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00005 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47249 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00063 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00147 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00280 * 180.02562 * 14 13 12 17 17 H 1.09006 * 112.95770 * 14.12331 * 16 14 13 18 18 C 1.53935 * 113.76334 * 242.47602 * 16 14 13 19 19 C 1.53926 * 86.33995 * 269.40040 * 18 16 14 20 20 N 1.47958 * 113.76123 * 145.76602 * 16 14 13 21 21 C 1.46899 * 111.00226 * 336.73938 * 20 16 14 22 22 C 1.54260 * 110.03034 * 301.01444 * 21 20 16 23 23 C 1.54967 * 104.15977 * 217.13604 * 22 21 20 24 24 C 1.54885 * 102.77713 * 37.88803 * 23 22 21 25 25 C 1.53871 * 110.03219 * 183.79555 * 21 20 16 26 26 H 0.96998 * 120.00221 * 359.97438 * 1 2 3 27 27 H 0.96991 * 120.00289 * 359.72620 * 9 7 2 28 28 H 1.09000 * 109.47146 * 300.00481 * 12 10 9 29 29 H 1.09006 * 109.46583 * 60.00440 * 12 10 9 30 30 H 0.97001 * 120.00058 * 0.02562 * 13 12 10 31 31 H 1.09003 * 113.72733 * 23.76170 * 18 16 14 32 32 H 1.09003 * 113.73515 * 154.93513 * 18 16 14 33 33 H 1.09003 * 113.75898 * 90.60132 * 19 18 16 34 34 H 1.09005 * 113.76211 * 221.84884 * 19 18 16 35 35 H 1.09003 * 110.01335 * 62.40076 * 21 20 16 36 36 H 1.09004 * 110.48876 * 335.78275 * 22 21 20 37 37 H 1.08998 * 110.49057 * 98.42530 * 22 21 20 38 38 H 1.09008 * 110.71597 * 279.57401 * 23 22 21 39 39 H 1.08996 * 110.92571 * 156.30130 * 23 22 21 40 40 H 1.09006 * 110.48244 * 203.41048 * 24 23 22 41 41 H 1.08989 * 110.60338 * 80.81904 * 24 23 22 42 42 H 1.09004 * 110.03043 * 238.56641 * 25 21 20 43 43 H 1.08994 * 110.03516 * 359.94655 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0067 10 6 1.9974 -3.5578 -0.0128 11 8 3.2103 -3.5577 -0.0125 12 6 1.2440 -4.8629 -0.0189 13 7 2.1960 -5.9764 -0.0243 14 6 1.7468 -7.2470 -0.0298 15 8 0.5544 -7.4687 -0.0308 16 6 2.7260 -8.3925 -0.0348 17 1 3.7422 -8.0842 0.2115 18 6 2.6342 -9.2816 -1.2880 19 6 1.6166 -10.1223 -0.4963 20 7 2.2625 -9.5764 0.7219 21 6 1.2608 -9.1991 1.7280 22 6 1.8595 -8.1712 2.7101 23 6 1.2505 -8.5580 4.0816 24 6 1.2367 -10.1058 4.0261 25 6 0.8646 -10.4285 2.5641 26 1 -0.4850 0.8400 0.0004 27 1 0.3535 -2.3907 -0.0066 28 1 0.6177 -4.9251 0.8710 29 1 0.6169 -4.9162 -0.9090 30 1 3.1496 -5.7991 -0.0232 31 1 2.2067 -8.7762 -2.1540 32 1 3.5585 -9.8114 -1.5188 33 1 0.5837 -9.7999 -0.6278 34 1 1.7451 -11.1978 -0.6192 35 1 0.3809 -8.7803 1.2396 36 1 2.9458 -8.2574 2.7374 37 1 1.5631 -7.1599 2.4318 38 1 0.2380 -8.1658 4.1783 39 1 1.8791 -8.2064 4.8998 40 1 0.4860 -10.5053 4.7079 41 1 2.2212 -10.5070 4.2665 42 1 -0.2078 -10.6059 2.4823 43 1 1.4148 -11.3053 2.2228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602153341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:39 Heat of formation + Delta-G solvation = -63.464460 kcal Electronic energy + Delta-G solvation = -24322.468523 eV Core-core repulsion = 20788.397237 eV Total energy + Delta-G solvation = -3534.071287 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.44172 -40.42762 -39.06506 -37.82295 -36.27091 -35.35416 -33.40284 -31.03047 -30.23168 -29.52693 -27.52701 -26.43434 -26.10834 -22.70056 -21.58623 -21.42659 -21.03303 -20.68618 -20.00633 -18.35760 -17.81951 -17.32198 -17.07920 -16.76682 -16.53417 -16.18178 -15.94989 -15.55267 -15.47879 -15.29649 -14.60521 -14.26043 -14.20375 -13.93284 -13.65282 -13.55815 -13.22204 -12.90979 -12.80997 -12.49084 -12.17832 -12.15022 -12.01042 -11.96286 -11.86215 -11.69886 -11.58828 -11.57536 -11.43398 -11.25394 -10.59338 -10.26713 -10.11287 -9.54325 -8.52928 -6.03502 1.34903 1.38066 1.41753 1.52533 1.88291 1.94154 2.29600 2.90969 3.08342 3.14087 3.41082 3.58069 3.66510 3.74231 3.87839 4.11043 4.18621 4.33158 4.36296 4.37967 4.40237 4.51457 4.52756 4.62659 4.71112 4.76271 4.82364 4.85819 4.94202 5.01455 5.04549 5.14521 5.16400 5.19928 5.34160 5.37178 5.40269 5.45385 5.89259 6.01433 6.40985 6.47817 7.01073 7.07590 7.41392 7.91455 8.63674 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.024095 B = 0.003232 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.797921 B = 8661.333860 C = 9245.773679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.123 3.877 13 N -0.701 5.701 14 C 0.513 3.487 15 O -0.566 6.566 16 C 0.000 4.000 17 H 0.127 0.873 18 C -0.113 4.113 19 C 0.000 4.000 20 N -0.443 5.443 21 C 0.018 3.982 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.107 4.107 26 H 0.280 0.720 27 H 0.398 0.602 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.414 0.586 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.038 0.962 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.935 -19.708 2.376 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.219 3.781 11 O -0.511 6.511 12 C -0.005 4.005 13 N -0.354 5.354 14 C 0.300 3.700 15 O -0.446 6.446 16 C -0.113 4.113 17 H 0.145 0.855 18 C -0.151 4.151 19 C -0.128 4.128 20 N -0.166 5.166 21 C -0.090 4.090 22 C -0.158 4.158 23 C -0.160 4.160 24 C -0.151 4.151 25 C -0.145 4.145 26 H 0.090 0.910 27 H 0.232 0.768 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.252 0.748 31 H 0.092 0.908 32 H 0.144 0.856 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.186 -20.077 2.762 20.383 hybrid contribution -0.620 1.878 -0.325 2.005 sum 1.566 -18.198 2.437 18.427 Atomic orbital electron populations 1.69672 1.07028 1.29744 1.49159 1.26129 0.96522 1.02690 0.95684 0.84934 0.77744 0.76217 0.79153 1.19421 1.19617 1.19462 1.19714 0.92997 0.83548 1.50570 0.89522 1.41840 1.09546 1.04637 1.63365 1.20400 0.88139 0.85890 0.83673 1.90476 1.15101 1.87500 1.57997 1.20742 0.91719 0.84097 1.03919 1.45778 1.11378 1.04519 1.73768 1.21137 0.89571 0.83959 0.75310 1.90574 1.18081 1.84670 1.51280 1.23392 0.99115 0.89848 0.98914 0.85502 1.23260 1.01590 0.95759 0.94532 1.24067 0.97467 1.01774 0.89542 1.69140 1.28034 1.13397 1.06009 1.23333 0.95590 0.96310 0.93802 1.22415 1.00599 0.96991 0.95825 1.22449 1.00599 0.96814 0.96121 1.22290 1.02095 0.94777 0.95962 1.22055 1.00536 0.97061 0.94885 0.91032 0.76777 0.89260 0.88847 0.74811 0.90845 0.85612 0.91689 0.87290 0.90958 0.91055 0.94317 0.92117 0.90766 0.90551 0.90982 0.92017 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.49 13.05 21.66 0.28 -48.20 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 1.00 41.48 29.55 68.60 2.03 43.51 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.34 -18.59 9.68 84.04 0.81 -17.77 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -27.89 5.29 -306.98 -1.62 -29.51 16 10 C 0.43 19.73 7.85 87.66 0.69 20.42 16 11 O -0.62 -31.81 15.24 -3.06 -0.05 -31.86 16 12 C 0.12 4.43 6.15 85.63 0.53 4.96 16 13 N -0.70 -22.31 5.53 -466.79 -2.58 -24.89 16 14 C 0.51 15.07 4.71 87.66 0.41 15.48 16 15 O -0.57 -19.33 12.71 -3.04 -0.04 -19.37 16 16 C 0.00 0.00 4.09 44.27 0.18 0.18 16 17 H 0.13 2.55 8.12 -2.38 -0.02 2.53 16 18 C -0.11 -2.03 7.87 31.23 0.25 -1.79 16 19 C 0.00 0.00 7.52 86.34 0.65 0.65 16 20 N -0.44 -9.89 5.84 -855.33 -4.99 -14.88 16 21 C 0.02 0.45 1.90 45.64 0.09 0.54 16 22 C -0.12 -3.08 5.19 31.69 0.16 -2.91 16 23 C -0.12 -2.62 6.91 31.91 0.22 -2.40 16 24 C -0.11 -2.06 6.83 31.67 0.22 -1.84 16 25 C -0.11 -2.17 6.50 31.32 0.20 -1.97 16 26 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 27 H 0.40 19.15 7.90 -92.72 -0.73 18.42 16 28 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 30 H 0.41 13.10 7.42 -92.71 -0.69 12.41 16 31 H 0.07 1.38 8.09 -2.39 -0.02 1.37 16 32 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.55 6.78 -2.39 -0.02 1.53 16 34 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.07 2.22 4.76 -2.39 -0.01 2.21 16 36 H 0.07 1.79 7.98 -2.38 -0.02 1.77 16 37 H 0.04 1.17 7.00 -2.39 -0.02 1.15 16 38 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.44 7.92 -2.39 -0.02 1.42 16 Total: -1.00 -63.12 343.94 -2.48 -65.60 By element: Atomic # 1 Polarization: 46.47 SS G_CDS: -0.39 Total: 46.09 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 4.88 Total: 13.51 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -8.91 Total: -117.49 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -0.09 Total: -51.23 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -63.12 -2.48 -65.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602153341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.139 kcal (2) G-P(sol) polarization free energy of solvation -63.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds