Wall clock time and date at job start Tue Mar 31 2020 04:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00232 * 2 1 4 4 C 1.53001 * 109.47244 * 199.35446 * 3 2 1 5 5 O 1.42893 * 109.47175 * 64.09933 * 4 3 2 6 6 C 1.46906 * 110.99852 * 123.95058 * 2 1 3 7 7 C 1.53002 * 109.46950 * 66.04713 * 6 2 1 8 8 H 1.09002 * 109.46899 * 304.99481 * 7 6 2 9 9 O 1.42898 * 109.47051 * 64.99828 * 7 6 2 10 10 C 1.53000 * 109.47086 * 185.00202 * 7 6 2 11 11 O 1.42897 * 109.47234 * 174.99815 * 10 7 6 12 12 C 1.35676 * 117.00056 * 179.97438 * 11 10 7 13 13 C 1.39310 * 119.81750 * 359.72232 * 12 11 10 14 14 C 1.36435 * 120.18709 * 179.76150 * 13 12 11 15 15 C 1.40836 * 119.80708 * 0.51669 * 14 13 12 16 16 C 1.41216 * 120.17903 * 179.71789 * 15 14 13 17 17 H 1.08001 * 119.99796 * 25.00825 * 16 15 14 18 18 C 1.39891 * 120.00493 * 205.00658 * 16 15 14 19 19 N 1.30880 * 119.99357 * 19.65349 * 18 16 15 20 20 Si 1.86797 * 120.00227 * 199.65694 * 18 16 15 21 21 H 1.48495 * 109.47224 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47267 * 120.00015 * 20 18 16 23 23 H 1.48504 * 109.46770 * 239.99521 * 20 18 16 24 24 C 1.40832 * 119.64473 * 359.74147 * 15 14 13 25 25 C 1.36437 * 119.80780 * 0.02562 * 24 15 14 26 26 H 1.09001 * 109.47228 * 290.03217 * 1 2 3 27 27 H 1.09003 * 109.46682 * 50.02810 * 1 2 3 28 28 H 1.08995 * 109.46906 * 170.02958 * 1 2 3 29 29 H 1.08999 * 109.47128 * 319.34953 * 3 2 1 30 30 H 1.09003 * 109.47275 * 79.35159 * 3 2 1 31 31 H 1.08999 * 109.47231 * 184.10055 * 4 3 2 32 32 H 1.09007 * 109.47170 * 304.09917 * 4 3 2 33 33 H 0.96706 * 114.00228 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46907 * 306.04704 * 6 2 1 35 35 H 1.08998 * 109.47093 * 186.04812 * 6 2 1 36 36 H 0.96698 * 113.99895 * 60.00324 * 9 7 6 37 37 H 1.09001 * 109.47242 * 54.99602 * 10 7 6 38 38 H 1.09002 * 109.46750 * 294.99934 * 10 7 6 39 39 H 1.08009 * 119.90691 * 0.02562 * 13 12 11 40 40 H 1.08003 * 120.09871 * 180.25097 * 14 13 12 41 41 H 0.97009 * 119.99601 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.09402 * 179.97438 * 24 15 14 43 43 H 1.08003 * 119.90719 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4488 1.3597 -0.4781 5 8 3.5003 0.9158 -1.8353 6 6 1.9954 -0.7659 1.1377 7 6 1.6314 -2.2426 0.9705 8 1 0.5531 -2.3388 0.8434 9 8 2.2955 -2.7696 -0.1799 10 6 2.0698 -3.0198 2.2133 11 8 1.6271 -4.3745 2.1087 12 6 1.9365 -5.2047 3.1362 13 6 2.6603 -4.7209 4.2238 14 6 2.9714 -5.5479 5.2634 15 6 2.5680 -6.8969 5.2297 16 6 2.8910 -7.7613 6.2987 17 1 3.0696 -7.3577 7.2844 18 6 2.9794 -9.1403 6.0810 19 7 3.1483 -9.6017 4.8680 20 14 2.8563 -10.3231 7.5216 21 1 2.6689 -9.5547 8.7784 22 1 1.6992 -11.2314 7.3189 23 1 4.1038 -11.1236 7.6127 24 6 1.8414 -7.3793 4.1240 25 6 1.5343 -6.5378 3.0949 26 1 -0.3634 0.3520 0.9655 27 1 -0.3633 0.6602 -0.7876 28 1 -0.3633 -1.0121 -0.1779 29 1 1.3978 1.9900 -0.6695 30 1 1.9484 1.7787 1.0100 31 1 3.8621 2.3660 -0.4090 32 1 4.0318 0.6838 0.1477 33 1 4.3933 0.8831 -2.2049 34 1 1.5610 -0.3871 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 3.2601 -2.7167 -0.1358 37 1 1.6329 -2.5623 3.1009 38 1 3.1568 -2.9978 2.2909 39 1 2.9723 -3.6871 4.2461 40 1 3.5290 -5.1703 6.1077 41 1 3.2100 -10.5580 4.7170 42 1 1.5288 -8.4125 4.0905 43 1 0.9775 -6.9062 2.2459 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604468390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:56 Heat of formation + Delta-G solvation = -111.123575 kcal Electronic energy + Delta-G solvation = -23281.482662 eV Core-core repulsion = 19713.051970 eV Total energy + Delta-G solvation = -3568.430692 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.28214 -38.45284 -37.09365 -36.19848 -35.48569 -33.30953 -30.96401 -29.86428 -29.41607 -28.97648 -26.77443 -24.85027 -24.23104 -22.21244 -21.03856 -20.63374 -20.52134 -17.76534 -17.35058 -17.07096 -16.61209 -16.26994 -15.77545 -15.33019 -15.21373 -14.85268 -14.23530 -13.94725 -13.88014 -13.76405 -13.47242 -13.09068 -12.79288 -12.52501 -12.27557 -12.13562 -11.98629 -11.85369 -11.77163 -11.40614 -11.19718 -11.13553 -10.89722 -10.72182 -10.54761 -10.20761 -9.97980 -9.86777 -9.78944 -9.32961 -9.00939 -8.47549 -7.64379 -7.03225 -6.73123 -4.24695 2.77364 2.94906 3.09072 3.14132 3.20722 3.41854 3.95447 4.02712 4.08911 4.51487 4.61586 4.73537 4.77846 4.89121 5.04839 5.08368 5.16978 5.20296 5.27410 5.34941 5.42251 5.47253 5.52352 5.62078 5.67218 5.78079 6.05871 6.06693 6.23336 6.72015 6.79226 6.79828 6.97789 7.11363 7.18291 7.45753 7.46122 7.55954 7.79093 7.83603 8.00960 8.20072 8.45814 8.65813 8.89943 8.99130 10.21768 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.040418 B = 0.002445 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.602865 B =11450.396985 C =11508.428222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.521 5.521 3 C 0.052 3.948 4 C 0.082 3.918 5 O -0.556 6.556 6 C 0.024 3.976 7 C 0.117 3.883 8 H 0.104 0.896 9 O -0.537 6.537 10 C 0.038 3.962 11 O -0.317 6.317 12 C -0.009 4.009 13 C -0.168 4.168 14 C -0.199 4.199 15 C 0.089 3.911 16 C -0.465 4.465 17 H 0.077 0.923 18 C 0.076 3.924 19 N -0.796 5.796 20 Si 0.905 3.095 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.275 1.275 24 C -0.134 4.134 25 C -0.118 4.118 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.373 0.627 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.369 0.631 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.280 0.720 42 H 0.123 0.877 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.225 18.080 -7.180 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.245 5.245 3 C -0.076 4.076 4 C 0.003 3.997 5 O -0.361 6.361 6 C -0.104 4.104 7 C 0.057 3.943 8 H 0.122 0.878 9 O -0.340 6.340 10 C -0.039 4.039 11 O -0.232 6.232 12 C -0.052 4.052 13 C -0.186 4.186 14 C -0.219 4.219 15 C 0.087 3.913 16 C -0.495 4.495 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.422 5.422 20 Si 0.730 3.270 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.201 1.201 24 C -0.153 4.153 25 C -0.137 4.137 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.219 0.781 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.215 0.785 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.141 0.859 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.406 17.439 -8.010 19.242 hybrid contribution 1.138 0.156 1.837 2.166 sum -0.268 17.595 -6.173 18.649 Atomic orbital electron populations 1.22479 0.87026 1.03162 0.99997 1.61789 1.07870 1.12435 1.42398 1.22193 0.95661 0.90186 0.99564 1.22157 0.96371 0.97232 0.83898 1.86620 1.32862 1.90069 1.26507 1.22832 1.00911 0.94750 0.91945 1.21845 0.98758 0.88988 0.84757 0.87791 1.86649 1.22934 1.84110 1.40333 1.23129 0.98936 0.83892 0.97970 1.85891 1.75825 1.18612 1.42892 1.18620 1.06703 0.90592 0.89325 1.20390 1.03931 0.98270 0.96055 1.20550 1.06943 0.95397 0.98995 1.17590 0.89678 0.91243 0.92811 1.19470 1.42686 0.90908 0.96461 0.90517 1.25878 0.92230 0.99400 0.96619 1.69861 1.34683 1.15582 1.22085 0.86315 0.78575 0.79998 0.82134 1.18487 1.19715 1.20090 1.20921 1.00556 0.99180 0.94683 1.19835 1.03579 0.90629 0.99637 0.95716 0.91335 0.90647 0.90040 0.93383 0.93692 0.93786 0.78079 0.93772 0.90272 0.78480 0.92694 0.92986 0.89015 0.88786 0.90941 0.85943 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.23 60.06 0.55 0.76 16 2 N -0.52 -5.55 4.58 -242.91 -1.11 -6.66 16 3 C 0.05 0.44 5.39 -3.83 -0.02 0.42 16 4 C 0.08 0.64 7.23 37.16 0.27 0.91 16 5 O -0.56 -5.31 13.59 -35.23 -0.48 -5.79 16 6 C 0.02 0.25 4.43 -3.82 -0.02 0.23 16 7 C 0.12 1.56 3.20 -26.73 -0.09 1.47 16 8 H 0.10 1.47 6.46 -51.93 -0.34 1.14 16 9 O -0.54 -8.00 13.25 -40.08 -0.53 -8.54 16 10 C 0.04 0.60 4.36 37.16 0.16 0.76 16 11 O -0.32 -6.63 10.09 -23.57 -0.24 -6.87 16 12 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 13 C -0.17 -3.81 8.96 -39.83 -0.36 -4.16 16 14 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 15 C 0.09 2.40 5.56 -106.80 -0.59 1.80 16 16 C -0.47 -12.41 9.03 -37.83 -0.34 -12.75 16 17 H 0.08 1.97 7.92 -52.49 -0.42 1.55 16 18 C 0.08 1.92 5.09 -17.34 -0.09 1.83 16 19 N -0.80 -20.78 11.10 55.54 0.62 -20.16 16 20 Si 0.91 18.73 29.60 -169.99 -5.03 13.70 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 24 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 25 C -0.12 -2.92 9.92 -39.83 -0.40 -3.31 16 26 H 0.02 0.21 8.06 -51.93 -0.42 -0.20 16 27 H 0.07 0.60 7.83 -51.93 -0.41 0.20 16 28 H 0.07 0.81 6.66 -51.93 -0.35 0.46 16 29 H 0.08 0.69 7.74 -51.93 -0.40 0.29 16 30 H 0.05 0.35 8.00 -51.93 -0.42 -0.07 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.04 0.33 6.66 -51.93 -0.35 -0.02 16 33 H 0.37 1.93 9.12 45.56 0.42 2.35 16 34 H 0.04 0.43 8.06 -51.93 -0.42 0.01 16 35 H 0.08 0.74 6.55 -51.93 -0.34 0.40 16 36 H 0.37 4.33 9.05 45.56 0.41 4.74 16 37 H 0.05 0.81 7.66 -51.93 -0.40 0.41 16 38 H 0.05 0.77 7.63 -51.93 -0.40 0.38 16 39 H 0.09 1.79 6.27 -52.48 -0.33 1.46 16 40 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 41 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 42 H 0.12 3.30 6.26 -52.49 -0.33 2.97 16 43 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -32.01 353.53 -8.21 -40.22 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -4.87 Total: 10.47 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -1.90 Total: -21.70 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: -0.50 Total: -26.83 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -1.25 Total: -21.19 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.01 -8.21 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604468390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.901 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds