Wall clock time and date at job start Tue Mar 31 2020 04:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00232 * 2 1 4 4 C 1.53001 * 109.47244 * 199.35446 * 3 2 1 5 5 O 1.42893 * 109.47175 * 64.09933 * 4 3 2 6 6 C 1.46906 * 110.99852 * 123.95058 * 2 1 3 7 7 C 1.53002 * 109.46950 * 66.04713 * 6 2 1 8 8 H 1.09002 * 109.46899 * 304.99481 * 7 6 2 9 9 O 1.42898 * 109.47051 * 64.99828 * 7 6 2 10 10 C 1.53000 * 109.47086 * 185.00202 * 7 6 2 11 11 O 1.42897 * 109.47234 * 174.99815 * 10 7 6 12 12 C 1.35676 * 117.00056 * 179.97438 * 11 10 7 13 13 C 1.39310 * 119.81750 * 359.72232 * 12 11 10 14 14 C 1.36435 * 120.18709 * 179.76150 * 13 12 11 15 15 C 1.40836 * 119.80708 * 0.51669 * 14 13 12 16 16 C 1.41216 * 120.17903 * 179.71789 * 15 14 13 17 17 H 1.08001 * 119.99796 * 25.00825 * 16 15 14 18 18 C 1.39891 * 120.00493 * 205.00658 * 16 15 14 19 19 N 1.30880 * 119.99357 * 19.65349 * 18 16 15 20 20 Si 1.86797 * 120.00227 * 199.65694 * 18 16 15 21 21 H 1.48495 * 109.47224 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47267 * 120.00015 * 20 18 16 23 23 H 1.48504 * 109.46770 * 239.99521 * 20 18 16 24 24 C 1.40832 * 119.64473 * 359.74147 * 15 14 13 25 25 C 1.36437 * 119.80780 * 0.02562 * 24 15 14 26 26 H 1.09001 * 109.47228 * 290.03217 * 1 2 3 27 27 H 1.09003 * 109.46682 * 50.02810 * 1 2 3 28 28 H 1.08995 * 109.46906 * 170.02958 * 1 2 3 29 29 H 1.08999 * 109.47128 * 319.34953 * 3 2 1 30 30 H 1.09003 * 109.47275 * 79.35159 * 3 2 1 31 31 H 1.08999 * 109.47231 * 184.10055 * 4 3 2 32 32 H 1.09007 * 109.47170 * 304.09917 * 4 3 2 33 33 H 0.96706 * 114.00228 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46907 * 306.04704 * 6 2 1 35 35 H 1.08998 * 109.47093 * 186.04812 * 6 2 1 36 36 H 0.96698 * 113.99895 * 60.00324 * 9 7 6 37 37 H 1.09001 * 109.47242 * 54.99602 * 10 7 6 38 38 H 1.09002 * 109.46750 * 294.99934 * 10 7 6 39 39 H 1.08009 * 119.90691 * 0.02562 * 13 12 11 40 40 H 1.08003 * 120.09871 * 180.25097 * 14 13 12 41 41 H 0.97009 * 119.99601 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.09402 * 179.97438 * 24 15 14 43 43 H 1.08003 * 119.90719 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4488 1.3597 -0.4781 5 8 3.5003 0.9158 -1.8353 6 6 1.9954 -0.7659 1.1377 7 6 1.6314 -2.2426 0.9705 8 1 0.5531 -2.3388 0.8434 9 8 2.2955 -2.7696 -0.1799 10 6 2.0698 -3.0198 2.2133 11 8 1.6271 -4.3745 2.1087 12 6 1.9365 -5.2047 3.1362 13 6 2.6603 -4.7209 4.2238 14 6 2.9714 -5.5479 5.2634 15 6 2.5680 -6.8969 5.2297 16 6 2.8910 -7.7613 6.2987 17 1 3.0696 -7.3577 7.2844 18 6 2.9794 -9.1403 6.0810 19 7 3.1483 -9.6017 4.8680 20 14 2.8563 -10.3231 7.5216 21 1 2.6689 -9.5547 8.7784 22 1 1.6992 -11.2314 7.3189 23 1 4.1038 -11.1236 7.6127 24 6 1.8414 -7.3793 4.1240 25 6 1.5343 -6.5378 3.0949 26 1 -0.3634 0.3520 0.9655 27 1 -0.3633 0.6602 -0.7876 28 1 -0.3633 -1.0121 -0.1779 29 1 1.3978 1.9900 -0.6695 30 1 1.9484 1.7787 1.0100 31 1 3.8621 2.3660 -0.4090 32 1 4.0318 0.6838 0.1477 33 1 4.3933 0.8831 -2.2049 34 1 1.5610 -0.3871 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 3.2601 -2.7167 -0.1358 37 1 1.6329 -2.5623 3.1009 38 1 3.1568 -2.9978 2.2909 39 1 2.9723 -3.6871 4.2461 40 1 3.5290 -5.1703 6.1077 41 1 3.2100 -10.5580 4.7170 42 1 1.5288 -8.4125 4.0905 43 1 0.9775 -6.9062 2.2459 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604468390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:54 Heat of formation + Delta-G solvation = -136.570511 kcal Electronic energy + Delta-G solvation = -23282.586124 eV Core-core repulsion = 19713.051970 eV Total energy + Delta-G solvation = -3569.534154 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -40.70539 -39.60271 -38.32340 -37.47764 -36.42893 -35.18318 -32.18706 -31.43699 -30.89620 -30.23567 -27.86682 -26.54500 -25.22314 -23.41002 -22.55718 -22.17765 -21.68479 -19.25696 -18.76949 -18.29262 -17.61831 -17.46822 -17.04760 -16.70304 -16.16189 -15.94020 -15.75543 -15.62928 -15.04086 -14.82193 -14.50866 -14.32400 -14.08612 -13.94019 -13.77826 -13.50499 -13.21962 -13.08566 -12.81651 -12.74004 -12.61190 -12.58994 -12.38630 -12.03048 -11.73428 -11.60068 -11.56622 -11.20945 -10.94033 -10.86833 -10.76952 -9.57156 -9.20558 -8.93625 -8.61011 -6.22600 0.94293 1.01560 1.39920 1.50733 1.55375 2.22705 2.35444 2.71488 3.03144 3.51028 3.53707 3.69331 3.84193 3.97232 3.99759 4.18992 4.27764 4.28321 4.32696 4.36154 4.41678 4.45700 4.55744 4.66974 4.70831 4.76459 4.85845 4.92225 4.97128 5.05257 5.09127 5.20959 5.27653 5.57305 5.63726 5.87754 6.04321 6.05404 6.10307 6.25341 6.55984 6.80058 6.88655 6.94524 7.03450 7.09946 8.36267 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.040418 B = 0.002445 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.602865 B =11450.396985 C =11508.428222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.541 5.541 3 C 0.049 3.951 4 C 0.079 3.921 5 O -0.584 6.584 6 C 0.034 3.966 7 C 0.124 3.876 8 H 0.092 0.908 9 O -0.559 6.559 10 C 0.031 3.969 11 O -0.332 6.332 12 C -0.001 4.001 13 C -0.163 4.163 14 C -0.208 4.208 15 C 0.056 3.944 16 C -0.500 4.500 17 H 0.077 0.923 18 C 0.034 3.966 19 N -0.830 5.830 20 Si 0.981 3.019 21 H -0.257 1.257 22 H -0.266 1.266 23 H -0.266 1.266 24 C -0.153 4.153 25 C -0.134 4.134 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.389 0.611 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.381 0.619 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.130 0.870 40 H 0.107 0.893 41 H 0.288 0.712 42 H 0.106 0.894 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 19.805 -6.584 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.265 5.265 3 C -0.079 4.079 4 C 0.001 3.999 5 O -0.391 6.391 6 C -0.094 4.094 7 C 0.064 3.936 8 H 0.110 0.890 9 O -0.365 6.365 10 C -0.046 4.046 11 O -0.248 6.248 12 C -0.045 4.045 13 C -0.182 4.182 14 C -0.227 4.227 15 C 0.054 3.946 16 C -0.530 4.530 17 H 0.095 0.905 18 C -0.180 4.180 19 N -0.457 5.457 20 Si 0.802 3.198 21 H -0.181 1.181 22 H -0.190 1.190 23 H -0.191 1.191 24 C -0.173 4.173 25 C -0.153 4.153 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.238 0.762 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.229 0.771 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.148 0.852 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.124 0.876 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.795 19.198 -7.432 20.601 hybrid contribution 0.960 -0.220 1.502 1.796 sum 0.164 18.977 -5.930 19.883 Atomic orbital electron populations 1.22460 0.86969 1.02380 1.00854 1.61754 1.08194 1.13862 1.42682 1.22294 0.96071 0.88946 1.00555 1.22264 0.95967 0.98478 0.83156 1.86567 1.34672 1.90346 1.27543 1.22696 1.01828 0.92391 0.92507 1.21809 0.97986 0.90576 0.83262 0.89028 1.86614 1.24216 1.84563 1.41085 1.23501 0.99877 0.81329 0.99850 1.85885 1.76035 1.20899 1.41982 1.18692 1.05394 0.90514 0.89879 1.20697 1.02817 0.99826 0.94828 1.20813 1.06910 0.94940 1.00079 1.17948 0.90616 0.92658 0.93372 1.19720 1.44528 0.92187 0.96539 0.90495 1.26750 0.91158 1.00674 0.99449 1.69913 1.35191 1.16435 1.24153 0.85174 0.78862 0.77423 0.78320 1.18088 1.19050 1.19135 1.20836 1.01844 0.98880 0.95738 1.19998 1.04057 0.91663 0.99563 0.94603 0.90752 0.92249 0.90248 0.91699 0.91565 0.93452 0.76243 0.92484 0.88894 0.77053 0.91210 0.91656 0.85229 0.87475 0.90193 0.87572 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.23 127.69 1.18 1.57 16 2 N -0.54 -10.41 4.58 -922.44 -4.22 -14.63 16 3 C 0.05 0.71 5.39 86.30 0.46 1.18 16 4 C 0.08 1.03 7.23 71.98 0.52 1.55 16 5 O -0.58 -10.13 13.59 -148.98 -2.03 -12.16 16 6 C 0.03 0.62 4.43 86.30 0.38 1.00 16 7 C 0.12 3.08 3.20 30.60 0.10 3.18 16 8 H 0.09 2.51 6.46 -2.39 -0.02 2.50 16 9 O -0.56 -15.96 13.25 -144.35 -1.91 -17.88 16 10 C 0.03 0.89 4.36 71.98 0.31 1.20 16 11 O -0.33 -13.48 10.09 -85.30 -0.86 -14.34 16 12 C 0.00 -0.04 6.71 22.79 0.15 0.11 16 13 C -0.16 -7.13 8.96 22.11 0.20 -6.93 16 14 C -0.21 -10.17 9.74 22.48 0.22 -9.95 16 15 C 0.06 3.08 5.56 -21.28 -0.12 2.97 16 16 C -0.50 -27.21 9.03 23.40 0.21 -27.00 16 17 H 0.08 4.01 7.92 -2.91 -0.02 3.99 16 18 C 0.03 1.73 5.09 85.23 0.43 2.16 16 19 N -0.83 -44.33 11.10 21.82 0.24 -44.09 16 20 Si 0.98 38.57 29.60 68.60 2.03 40.61 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 22 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 24 C -0.15 -8.37 8.64 22.48 0.19 -8.18 16 25 C -0.13 -6.73 9.92 22.11 0.22 -6.51 16 26 H 0.04 0.56 8.06 -2.39 -0.02 0.54 16 27 H 0.07 1.22 7.83 -2.39 -0.02 1.20 16 28 H 0.06 1.25 6.66 -2.39 -0.02 1.23 16 29 H 0.08 1.18 7.74 -2.39 -0.02 1.16 16 30 H 0.06 0.72 8.00 -2.39 -0.02 0.71 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.57 6.66 -2.38 -0.02 0.56 16 33 H 0.39 3.41 9.12 -74.05 -0.68 2.73 16 34 H 0.06 0.90 8.06 -2.39 -0.02 0.88 16 35 H 0.09 1.43 6.55 -2.39 -0.02 1.42 16 36 H 0.38 8.34 9.05 -74.06 -0.67 7.68 16 37 H 0.07 1.83 7.66 -2.39 -0.02 1.81 16 38 H 0.07 1.73 7.63 -2.39 -0.02 1.71 16 39 H 0.13 4.59 6.27 -2.91 -0.02 4.57 16 40 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 41 H 0.29 13.84 8.30 -92.70 -0.77 13.07 16 42 H 0.11 6.01 6.26 -2.91 -0.02 5.99 16 43 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -69.32 353.53 -2.59 -71.92 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.31 Total: 34.23 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 4.47 Total: -43.66 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -3.98 Total: -58.72 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -4.80 Total: -44.38 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.61 kcal Total: -69.32 -2.59 -71.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604468390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.654 kcal (2) G-P(sol) polarization free energy of solvation -69.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds