Wall clock time and date at job start Tue Mar 31 2020 04:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99937 * 2 1 4 4 H 1.48502 * 109.47308 * 270.00148 * 3 2 1 5 5 H 1.48500 * 109.47166 * 30.00773 * 3 2 1 6 6 H 1.48503 * 109.47084 * 150.00462 * 3 2 1 7 7 C 1.37874 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00104 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00036 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47079 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00211 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00008 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00444 * 179.97438 * 11 10 9 14 14 N 1.46894 * 109.47512 * 174.15586 * 13 11 10 15 15 C 1.48753 * 110.99685 * 293.82859 * 14 13 11 16 16 C 1.54457 * 104.40043 * 199.25760 * 15 14 13 17 17 H 1.09001 * 111.90204 * 263.60224 * 16 15 14 18 18 C 1.54153 * 108.80581 * 138.52050 * 16 15 14 19 19 C 1.54834 * 104.34573 * 223.92809 * 18 16 15 20 20 C 1.54828 * 102.73252 * 38.22218 * 19 18 16 21 21 C 1.54149 * 104.34714 * 321.77469 * 20 19 18 22 22 H 1.08995 * 111.87029 * 261.19078 * 21 20 19 23 23 C 1.48858 * 111.12018 * 179.28633 * 14 13 11 24 24 H 1.08997 * 110.35467 * 41.95658 * 23 14 13 25 25 C 1.50709 * 110.61045 * 279.47333 * 23 14 13 26 26 N 1.34771 * 120.00200 * 164.94299 * 25 23 14 27 27 O 1.21285 * 119.99577 * 344.94225 * 25 23 14 28 28 H 0.97003 * 119.99916 * 359.97438 * 1 2 3 29 29 H 1.08989 * 109.47121 * 60.00668 * 9 7 2 30 30 H 1.09002 * 109.46923 * 299.99769 * 9 7 2 31 31 H 0.97005 * 120.00227 * 359.97438 * 10 9 7 32 32 H 1.08999 * 109.47044 * 54.15145 * 13 11 10 33 33 H 1.08999 * 109.46934 * 294.15468 * 13 11 10 34 34 H 1.09006 * 110.46859 * 80.49645 * 15 14 13 35 35 H 1.09000 * 110.47477 * 318.02415 * 15 14 13 36 36 H 1.09005 * 110.45420 * 342.64699 * 18 16 15 37 37 H 1.09001 * 110.45732 * 105.20783 * 18 16 15 38 38 H 1.09000 * 110.75612 * 279.91420 * 19 18 16 39 39 H 1.08997 * 110.91384 * 156.60975 * 19 18 16 40 40 H 1.09002 * 110.45778 * 203.06108 * 20 19 18 41 41 H 1.09003 * 110.56665 * 80.54802 * 20 19 18 42 42 H 0.96994 * 120.00027 * 359.97438 * 26 25 23 43 43 H 0.96999 * 119.99808 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 6 1.7537 -4.8833 -0.0011 12 8 0.5614 -5.1050 -0.0011 13 6 2.7330 -6.0288 -0.0016 14 7 2.0040 -7.2963 0.1389 15 6 1.3528 -7.3916 1.4729 16 6 1.0770 -8.9000 1.6588 17 1 0.0579 -9.1647 1.3769 18 6 1.4104 -9.2906 3.1123 19 6 2.1887 -10.6228 2.9825 20 6 3.0507 -10.3926 1.7172 21 6 2.1285 -9.6064 0.7645 22 1 1.6631 -10.2553 0.0226 23 6 2.9371 -8.4561 0.1254 24 1 3.8234 -8.2365 0.7208 25 6 3.3267 -8.8072 -1.2875 26 7 4.3820 -9.6140 -1.5148 27 8 2.6903 -8.3638 -2.2199 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 3.1567 -3.4354 -0.0009 32 1 3.4266 -5.9142 0.8313 33 1 3.2886 -6.0313 -0.9394 34 1 0.4189 -6.8294 1.4822 35 1 2.0234 -7.0280 2.2514 36 1 2.0350 -8.5282 3.5779 37 1 0.4957 -9.4380 3.6865 38 1 1.5035 -11.4579 2.8365 39 1 2.8201 -10.7911 3.8549 40 1 3.3354 -11.3457 1.2715 41 1 3.9372 -9.8064 1.9593 42 1 4.8911 -9.9683 -0.7691 43 1 4.6329 -9.8397 -2.4242 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787332286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:17 Heat of formation + Delta-G solvation = -74.890711 kcal Electronic energy + Delta-G solvation = -24308.843565 eV Core-core repulsion = 20774.276799 eV Total energy + Delta-G solvation = -3534.566766 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.83995 -38.74721 -38.41403 -35.37749 -34.04047 -33.77190 -32.28628 -30.79813 -30.30150 -27.58393 -26.47123 -25.53776 -22.90524 -22.18087 -21.07519 -20.28522 -19.65038 -19.34920 -17.83067 -17.04976 -16.94449 -15.83147 -15.74706 -15.61623 -15.11168 -14.85598 -14.42225 -14.37935 -14.25081 -14.01513 -13.45027 -13.15762 -12.87903 -12.54125 -12.34729 -11.97724 -11.89705 -11.44598 -11.34596 -11.33030 -11.13284 -10.99091 -10.92812 -10.84498 -10.71789 -10.64505 -10.28274 -9.87242 -9.80943 -9.35837 -8.96464 -8.69584 -8.36086 -7.80057 -6.13208 -4.19977 2.56008 3.18269 3.26295 3.32070 3.34406 3.46339 3.77090 4.12090 4.23681 4.29726 4.39204 4.57140 4.79937 4.86002 4.94459 5.02159 5.19923 5.22641 5.23636 5.29505 5.33993 5.41193 5.48980 5.53419 5.57128 5.67719 5.73999 5.84335 5.89079 6.02304 6.14918 6.26985 6.59498 6.74533 6.87926 7.20981 7.37297 7.51154 7.57730 7.71885 8.01282 8.21402 8.69059 8.83568 9.18983 9.46759 10.97037 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022864 B = 0.003283 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.354613 B = 8526.039913 C = 9191.988012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.716 5.716 11 C 0.502 3.498 12 O -0.535 6.535 13 C 0.023 3.977 14 N -0.460 5.460 15 C 0.036 3.964 16 C -0.090 4.090 17 H 0.092 0.908 18 C -0.121 4.121 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.077 4.077 22 H 0.091 0.909 23 C 0.043 3.957 24 H 0.074 0.926 25 C 0.521 3.479 26 N -0.861 5.861 27 O -0.511 6.511 28 H 0.266 0.734 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.388 0.612 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.398 0.602 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.200 -23.611 5.732 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.365 5.365 11 C 0.286 3.714 12 O -0.412 6.412 13 C -0.108 4.108 14 N -0.184 5.184 15 C -0.091 4.091 16 C -0.109 4.109 17 H 0.110 0.890 18 C -0.159 4.159 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.097 4.097 22 H 0.109 0.891 23 C -0.069 4.069 24 H 0.092 0.908 25 C 0.304 3.696 26 N -0.426 5.426 27 O -0.384 6.384 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.221 0.779 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.225 0.775 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 9.205 -23.194 4.789 25.410 hybrid contribution 2.013 0.923 0.513 2.273 sum 11.218 -22.272 5.302 25.495 Atomic orbital electron populations 1.69978 1.06095 1.27248 1.48939 1.24953 0.94911 0.99421 0.94759 0.86420 0.79584 0.82698 0.78221 1.20463 1.21018 1.19790 1.21231 0.93233 0.90505 1.53127 0.91962 1.19076 0.88272 0.81847 0.97702 1.46430 1.10991 1.06042 1.73054 1.20104 0.89437 0.83914 0.77959 1.90648 1.16484 1.84536 1.49568 1.22247 0.95749 0.90136 1.02687 1.65278 1.23423 0.99163 1.30499 1.23507 1.01215 0.95980 0.88413 1.22570 0.99535 0.94589 0.94166 0.88965 1.22508 1.00326 0.97165 0.95856 1.22479 0.98392 0.97784 0.97345 1.22555 0.97864 0.99957 0.95673 1.22467 0.95362 0.94705 0.97118 0.89106 1.22937 0.96370 0.94299 0.93280 0.90836 1.20418 0.79715 0.78145 0.91313 1.43881 1.33407 1.53235 1.12088 1.90808 1.51447 1.51326 1.44804 0.92470 0.95529 0.95615 0.77938 0.92526 0.88259 0.87869 0.93735 0.91254 0.91285 0.91342 0.91466 0.91364 0.91284 0.77468 0.76883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.03 9.28 -34.44 -0.32 -15.34 16 8 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 9 C 0.25 6.87 5.43 -5.19 -0.03 6.84 16 10 N -0.72 -15.69 5.55 -61.48 -0.34 -16.03 16 11 C 0.50 10.63 7.52 -10.99 -0.08 10.55 16 12 O -0.54 -13.49 14.79 5.56 0.08 -13.41 16 13 C 0.02 0.37 5.26 -4.98 -0.03 0.35 16 14 N -0.46 -7.11 4.41 -224.42 -0.99 -8.10 16 15 C 0.04 0.50 5.24 -2.03 -0.01 0.49 16 16 C -0.09 -0.96 3.95 -88.16 -0.35 -1.30 16 17 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 18 C -0.12 -0.99 6.36 -25.16 -0.16 -1.15 16 19 C -0.12 -0.79 6.90 -24.80 -0.17 -0.96 16 20 C -0.12 -0.77 6.36 -25.17 -0.16 -0.93 16 21 C -0.08 -0.73 3.43 -88.16 -0.30 -1.03 16 22 H 0.09 0.92 7.95 -51.93 -0.41 0.51 16 23 C 0.04 0.49 2.17 -67.01 -0.15 0.34 16 24 H 0.07 0.65 7.07 -51.93 -0.37 0.29 16 25 C 0.52 6.37 6.98 -10.98 -0.08 6.29 16 26 N -0.86 -6.14 8.87 31.22 0.28 -5.86 16 27 O -0.51 -9.12 17.41 5.55 0.10 -9.02 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.03 0.81 8.14 -51.94 -0.42 0.39 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.39 7.28 8.32 -40.82 -0.34 6.94 16 32 H 0.06 0.73 7.97 -51.93 -0.41 0.32 16 33 H 0.10 1.56 7.90 -51.93 -0.41 1.14 16 34 H 0.10 1.78 6.79 -51.93 -0.35 1.43 16 35 H 0.04 0.57 6.97 -51.93 -0.36 0.20 16 36 H 0.07 0.58 7.18 -51.93 -0.37 0.21 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.38 7.18 -51.93 -0.37 0.01 16 42 H 0.40 1.54 8.83 -40.82 -0.36 1.18 16 43 H 0.40 2.52 8.93 -40.82 -0.36 2.16 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -36.56 347.51 -8.47 -45.03 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.62 Total: 5.99 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.93 Total: 5.84 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.32 Total: -55.79 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.18 Total: -22.43 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.56 -8.47 -45.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787332286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.861 kcal (2) G-P(sol) polarization free energy of solvation -36.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds