Wall clock time and date at job start Tue Mar 31 2020 04:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99937 * 2 1 4 4 H 1.48502 * 109.47308 * 270.00148 * 3 2 1 5 5 H 1.48500 * 109.47166 * 30.00773 * 3 2 1 6 6 H 1.48503 * 109.47084 * 150.00462 * 3 2 1 7 7 C 1.37874 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00104 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00036 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47079 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00211 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00008 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00444 * 179.97438 * 11 10 9 14 14 N 1.46894 * 109.47512 * 174.15586 * 13 11 10 15 15 C 1.48753 * 110.99685 * 293.82859 * 14 13 11 16 16 C 1.54457 * 104.40043 * 199.25760 * 15 14 13 17 17 H 1.09001 * 111.90204 * 263.60224 * 16 15 14 18 18 C 1.54153 * 108.80581 * 138.52050 * 16 15 14 19 19 C 1.54834 * 104.34573 * 223.92809 * 18 16 15 20 20 C 1.54828 * 102.73252 * 38.22218 * 19 18 16 21 21 C 1.54149 * 104.34714 * 321.77469 * 20 19 18 22 22 H 1.08995 * 111.87029 * 261.19078 * 21 20 19 23 23 C 1.48858 * 111.12018 * 179.28633 * 14 13 11 24 24 H 1.08997 * 110.35467 * 41.95658 * 23 14 13 25 25 C 1.50709 * 110.61045 * 279.47333 * 23 14 13 26 26 N 1.34771 * 120.00200 * 164.94299 * 25 23 14 27 27 O 1.21285 * 119.99577 * 344.94225 * 25 23 14 28 28 H 0.97003 * 119.99916 * 359.97438 * 1 2 3 29 29 H 1.08989 * 109.47121 * 60.00668 * 9 7 2 30 30 H 1.09002 * 109.46923 * 299.99769 * 9 7 2 31 31 H 0.97005 * 120.00227 * 359.97438 * 10 9 7 32 32 H 1.08999 * 109.47044 * 54.15145 * 13 11 10 33 33 H 1.08999 * 109.46934 * 294.15468 * 13 11 10 34 34 H 1.09006 * 110.46859 * 80.49645 * 15 14 13 35 35 H 1.09000 * 110.47477 * 318.02415 * 15 14 13 36 36 H 1.09005 * 110.45420 * 342.64699 * 18 16 15 37 37 H 1.09001 * 110.45732 * 105.20783 * 18 16 15 38 38 H 1.09000 * 110.75612 * 279.91420 * 19 18 16 39 39 H 1.08997 * 110.91384 * 156.60975 * 19 18 16 40 40 H 1.09002 * 110.45778 * 203.06108 * 20 19 18 41 41 H 1.09003 * 110.56665 * 80.54802 * 20 19 18 42 42 H 0.96994 * 120.00027 * 359.97438 * 26 25 23 43 43 H 0.96999 * 119.99808 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 6 1.7537 -4.8833 -0.0011 12 8 0.5614 -5.1050 -0.0011 13 6 2.7330 -6.0288 -0.0016 14 7 2.0040 -7.2963 0.1389 15 6 1.3528 -7.3916 1.4729 16 6 1.0770 -8.9000 1.6588 17 1 0.0579 -9.1647 1.3769 18 6 1.4104 -9.2906 3.1123 19 6 2.1887 -10.6228 2.9825 20 6 3.0507 -10.3926 1.7172 21 6 2.1285 -9.6064 0.7645 22 1 1.6631 -10.2553 0.0226 23 6 2.9371 -8.4561 0.1254 24 1 3.8234 -8.2365 0.7208 25 6 3.3267 -8.8072 -1.2875 26 7 4.3820 -9.6140 -1.5148 27 8 2.6903 -8.3638 -2.2199 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 3.1567 -3.4354 -0.0009 32 1 3.4266 -5.9142 0.8313 33 1 3.2886 -6.0313 -0.9394 34 1 0.4189 -6.8294 1.4822 35 1 2.0234 -7.0280 2.2514 36 1 2.0350 -8.5282 3.5779 37 1 0.4957 -9.4380 3.6865 38 1 1.5035 -11.4579 2.8365 39 1 2.8201 -10.7911 3.8549 40 1 3.3354 -11.3457 1.2715 41 1 3.9372 -9.8064 1.9593 42 1 4.8911 -9.9683 -0.7691 43 1 4.6329 -9.8397 -2.4242 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787332286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:16 Heat of formation + Delta-G solvation = -106.564243 kcal Electronic energy + Delta-G solvation = -24310.217032 eV Core-core repulsion = 20774.276799 eV Total energy + Delta-G solvation = -3535.940233 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -41.80578 -40.31788 -39.45313 -36.49465 -35.95580 -34.63825 -34.36444 -31.60665 -31.38572 -29.41154 -27.29126 -26.87260 -24.56843 -23.52963 -21.76306 -21.52940 -20.91642 -20.33775 -18.93129 -18.60233 -17.84619 -17.43602 -17.13152 -16.64990 -16.55549 -16.36096 -15.82617 -15.38074 -15.26367 -15.21000 -14.71445 -14.44404 -14.29345 -13.95780 -13.85210 -13.54836 -13.15646 -12.92998 -12.76008 -12.56384 -12.23981 -12.18510 -11.95355 -11.87212 -11.56593 -11.54508 -11.49817 -11.44194 -10.90173 -10.81472 -10.69745 -10.60218 -9.84964 -9.44573 -8.30064 -6.47351 1.41898 1.45105 1.56194 1.63825 1.75200 2.17576 2.37373 2.56098 3.04533 3.13650 3.41540 3.45245 3.72905 3.92229 4.06508 4.09434 4.15351 4.26826 4.27400 4.43472 4.46939 4.54734 4.56574 4.76489 4.90625 4.91726 5.04164 5.08610 5.16480 5.21932 5.28695 5.30761 5.38504 5.47173 5.53486 5.65040 5.71864 5.80623 5.84027 5.97036 6.54965 6.63429 6.91165 7.22129 7.43488 7.49634 8.82383 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022864 B = 0.003283 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.354613 B = 8526.039913 C = 9191.988012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.988 3.012 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.709 5.709 11 C 0.496 3.504 12 O -0.583 6.583 13 C 0.040 3.960 14 N -0.500 5.500 15 C 0.038 3.962 16 C -0.090 4.090 17 H 0.073 0.927 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.072 4.072 22 H 0.079 0.921 23 C 0.047 3.953 24 H 0.111 0.889 25 C 0.520 3.480 26 N -0.832 5.832 27 O -0.579 6.579 28 H 0.269 0.731 29 H -0.019 1.019 30 H -0.012 1.012 31 H 0.408 0.592 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.418 0.582 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.341 -24.949 7.030 30.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.360 5.360 11 C 0.282 3.718 12 O -0.463 6.463 13 C -0.091 4.091 14 N -0.224 5.224 15 C -0.089 4.089 16 C -0.110 4.110 17 H 0.091 0.909 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.092 4.092 22 H 0.098 0.902 23 C -0.064 4.064 24 H 0.128 0.872 25 C 0.304 3.696 26 N -0.397 5.397 27 O -0.457 6.457 28 H 0.078 0.922 29 H -0.001 1.001 30 H 0.006 0.994 31 H 0.243 0.757 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.250 0.750 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 13.448 -24.609 6.116 28.703 hybrid contribution 0.657 1.254 0.091 1.418 sum 14.105 -23.355 6.206 27.981 Atomic orbital electron populations 1.70151 1.08375 1.28597 1.49921 1.26117 0.95802 1.04051 0.93788 0.85118 0.78532 0.76739 0.78574 1.19728 1.20840 1.17653 1.21616 0.94325 0.90483 1.52980 0.89707 1.18508 0.88667 0.84360 0.93852 1.46165 1.11140 1.05393 1.73304 1.21176 0.89879 0.84722 0.75973 1.90631 1.19180 1.85264 1.51273 1.22089 0.94296 0.88154 1.04573 1.65135 1.25593 1.00091 1.31590 1.23406 0.99348 0.97716 0.88431 1.22552 0.99274 0.92501 0.96625 0.90858 1.22482 1.00805 0.98551 0.93670 1.22473 0.98418 0.96355 0.98212 1.22562 0.97451 1.00642 0.94419 1.22470 0.95390 0.94198 0.97122 0.90250 1.23085 0.97033 0.92952 0.93376 0.87168 1.20664 0.79951 0.78019 0.90986 1.43615 1.31561 1.51054 1.13477 1.90792 1.54011 1.54315 1.46595 0.92234 1.00083 0.99384 0.75687 0.88427 0.87621 0.92696 0.92186 0.90939 0.91401 0.91155 0.89622 0.89200 0.89380 0.75010 0.76040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.99 43.11 29.54 68.60 2.03 45.14 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.56 -31.17 9.28 25.60 0.24 -30.94 16 8 H 0.08 4.27 7.60 -2.91 -0.02 4.24 16 9 C 0.27 15.48 5.43 85.63 0.46 15.95 16 10 N -0.71 -31.88 5.55 -466.80 -2.59 -34.47 16 11 C 0.50 21.77 7.52 87.66 0.66 22.43 16 12 O -0.58 -31.58 14.79 -3.03 -0.04 -31.63 16 13 C 0.04 1.24 5.26 85.56 0.45 1.69 16 14 N -0.50 -15.42 4.41 -863.92 -3.81 -19.23 16 15 C 0.04 1.09 5.24 86.44 0.45 1.55 16 16 C -0.09 -1.91 3.95 -9.20 -0.04 -1.95 16 17 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 18 C -0.12 -1.71 6.36 31.61 0.20 -1.51 16 19 C -0.12 -1.07 6.90 31.84 0.22 -0.85 16 20 C -0.11 -0.91 6.36 31.61 0.20 -0.70 16 21 C -0.07 -1.21 3.43 -9.20 -0.03 -1.25 16 22 H 0.08 1.52 7.95 -2.39 -0.02 1.50 16 23 C 0.05 0.94 2.17 44.29 0.10 1.04 16 24 H 0.11 1.41 7.07 -2.39 -0.02 1.40 16 25 C 0.52 11.82 6.98 87.66 0.61 12.43 16 26 N -0.83 -9.21 8.87 -173.53 -1.54 -10.75 16 27 O -0.58 -20.83 17.41 -3.04 -0.05 -20.88 16 28 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 29 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 30 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.41 14.99 8.32 -92.70 -0.77 14.22 16 32 H 0.10 2.21 7.97 -2.39 -0.02 2.19 16 33 H 0.11 3.18 7.90 -2.39 -0.02 3.17 16 34 H 0.05 2.08 6.79 -2.38 -0.02 2.06 16 35 H 0.06 1.47 6.97 -2.39 -0.02 1.45 16 36 H 0.07 1.03 7.18 -2.38 -0.02 1.01 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.09 0.40 8.14 -2.39 -0.02 0.39 16 41 H 0.09 0.43 7.18 -2.39 -0.02 0.41 16 42 H 0.42 1.30 8.83 -92.71 -0.82 0.48 16 43 H 0.41 4.03 8.93 -92.71 -0.83 3.20 16 Total: -1.00 -87.17 347.51 -3.10 -90.27 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -1.37 Total: 20.56 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 3.99 Total: 18.46 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -7.65 Total: -121.92 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.10 Total: -52.51 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -87.17 -3.10 -90.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787332286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.293 kcal (2) G-P(sol) polarization free energy of solvation -87.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds