Wall clock time and date at job start Tue Mar 31 2020 03:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00253 * 2 1 4 4 C 1.38000 * 119.99850 * 179.97438 * 2 1 3 5 5 N 1.32868 * 120.04291 * 0.02562 * 4 2 1 6 6 C 1.32839 * 119.82042 * 180.02562 * 5 4 2 7 7 N 1.37995 * 120.04079 * 179.97438 * 6 5 4 8 8 N 1.33129 * 119.91785 * 0.25522 * 6 5 4 9 9 C 1.32136 * 120.08131 * 359.48910 * 8 6 5 10 10 C 1.50694 * 119.91096 * 180.23077 * 9 8 6 11 11 O 1.45206 * 109.47314 * 270.27611 * 10 9 8 12 12 C 1.34233 * 116.99848 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00254 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99560 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.46795 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47117 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99755 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00340 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00425 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00032 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46993 * 89.99468 * 20 18 16 22 22 H 1.48497 * 109.47418 * 210.00251 * 20 18 16 23 23 H 1.48501 * 109.46828 * 329.99947 * 20 18 16 24 24 N 1.32165 * 120.17762 * 0.51349 * 9 8 6 25 25 H 1.09000 * 109.47121 * 269.99517 * 1 2 3 26 26 H 1.09003 * 109.47292 * 29.99863 * 1 2 3 27 27 H 1.09002 * 109.47189 * 150.00098 * 1 2 3 28 28 H 1.08998 * 109.47435 * 240.00466 * 3 2 1 29 29 H 1.09005 * 109.46616 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.46989 * 119.99990 * 3 2 1 31 31 H 0.96996 * 120.00297 * 0.02562 * 7 6 5 32 32 H 0.97009 * 120.00094 * 179.72794 * 7 6 5 33 33 H 1.08999 * 109.47153 * 30.28043 * 10 9 8 34 34 H 1.09000 * 109.47498 * 150.28025 * 10 9 8 35 35 H 1.09003 * 109.46624 * 299.99886 * 14 12 11 36 36 H 1.08997 * 109.47189 * 59.99818 * 14 12 11 37 37 H 1.08991 * 109.47428 * 299.99741 * 15 14 12 38 38 H 1.08997 * 109.47447 * 59.99918 * 15 14 12 39 39 H 0.96997 * 120.00209 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1549 -1.1951 0.0005 5 7 1.4914 -2.3463 0.0005 6 6 2.1600 -3.4941 0.0016 7 7 1.4755 -4.6923 0.0021 8 7 3.4913 -3.4871 0.0077 9 6 4.1476 -2.3402 0.0026 10 6 5.6545 -2.3368 0.0044 11 8 6.1370 -2.3353 1.3739 12 6 7.4675 -2.3327 1.5513 13 8 8.2047 -2.3313 0.5939 14 6 8.0419 -2.3316 2.9446 15 6 9.5699 -2.3280 2.8662 16 6 10.1443 -2.3262 4.2594 17 1 9.4854 -2.3279 5.1152 18 6 11.5109 -2.3235 4.4417 19 7 12.0123 -2.3214 5.6575 20 14 12.6506 -2.3212 2.9616 21 1 12.9497 -0.9205 2.5693 22 1 13.9147 -3.0187 3.3091 23 1 11.9933 -3.0226 1.8297 24 7 3.4859 -1.1961 0.0016 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 2.8241 1.3265 -0.8900 29 1 1.4891 2.0972 0.0005 30 1 2.8242 1.3264 0.8900 31 1 0.5056 -4.6968 0.0014 32 1 1.9644 -5.5302 -0.0011 33 1 6.0205 -3.2260 -0.5088 34 1 6.0165 -1.4461 -0.5092 35 1 7.7036 -1.4422 3.4763 36 1 7.7071 -3.2221 3.4763 37 1 9.9085 -3.2170 2.3344 38 1 9.9044 -1.4372 2.3346 39 1 12.9737 -2.3191 5.7857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:07 Heat of formation + Delta-G solvation = -4.793138 kcal Electronic energy + Delta-G solvation = -22792.562651 eV Core-core repulsion = 19157.495200 eV Total energy + Delta-G solvation = -3635.067451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.71585 -40.04571 -37.67418 -36.57624 -35.57051 -33.60740 -33.36422 -31.86661 -31.42516 -29.15424 -28.18528 -26.54263 -26.12313 -23.23390 -22.25364 -21.62195 -19.81626 -19.38173 -18.19207 -17.57887 -16.76734 -16.61823 -16.20269 -16.16348 -16.02919 -15.54601 -14.82239 -14.72881 -14.23747 -14.14875 -13.75835 -13.60623 -12.96647 -12.81404 -12.74474 -12.45662 -12.39649 -12.31833 -12.11038 -11.44402 -11.22882 -11.00374 -10.55741 -10.30588 -10.14355 -9.94185 -9.74624 -9.72936 -9.63205 -9.24915 -9.23578 -8.57669 -8.53488 -6.04998 -4.04862 0.77317 1.19733 2.15291 2.69063 2.79999 2.93781 3.36646 3.43475 3.52832 3.62927 3.93765 4.08434 4.48484 4.52903 4.75335 4.93229 5.03967 5.15380 5.21635 5.29803 5.31383 5.37051 5.47076 5.53219 5.73329 6.02329 6.04346 6.06031 6.21737 6.47344 6.56711 6.76009 6.90270 6.99656 7.26244 7.33116 7.33699 7.72779 8.18682 8.34304 8.49121 8.97459 9.56703 11.07592 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024460 B = 0.002768 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.454321 B =10113.218001 C =10568.320239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.581 5.581 3 C 0.104 3.896 4 C 0.626 3.374 5 N -0.650 5.650 6 C 0.630 3.370 7 N -0.806 5.806 8 N -0.621 5.621 9 C 0.438 3.562 10 C 0.136 3.864 11 O -0.354 6.354 12 C 0.463 3.537 13 O -0.508 6.508 14 C -0.093 4.093 15 C -0.002 4.002 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.070 3.930 19 N -0.901 5.901 20 Si 0.877 3.123 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.261 1.261 24 N -0.615 5.615 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.416 0.584 32 H 0.419 0.581 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.027 0.973 38 H 0.022 0.978 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.637 1.929 -13.984 30.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.298 5.298 3 C -0.038 4.038 4 C 0.262 3.738 5 N -0.391 5.391 6 C 0.262 3.738 7 N -0.356 5.356 8 N -0.357 5.357 9 C 0.158 3.842 10 C 0.060 3.940 11 O -0.270 6.270 12 C 0.307 3.693 13 O -0.394 6.394 14 C -0.131 4.131 15 C -0.040 4.040 16 C -0.564 4.564 17 H 0.093 0.907 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.185 1.185 24 N -0.350 5.350 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.247 0.753 32 H 0.251 0.749 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.375 2.137 -14.183 30.023 hybrid contribution 0.326 -0.335 -0.784 0.912 sum -26.049 1.802 -14.967 30.096 Atomic orbital electron populations 1.21710 0.77170 1.03297 1.02019 1.45902 1.06099 1.02031 1.75803 1.21688 0.96658 0.82312 1.03167 1.18888 0.84907 0.85687 0.84346 1.67883 1.40810 0.97308 1.33104 1.18987 0.85069 0.86212 0.83481 1.41670 1.09773 1.03796 1.80352 1.68368 1.07451 1.31404 1.28442 1.22303 0.95908 0.82128 0.83834 1.21284 0.84374 1.04898 0.83425 1.86581 1.26632 1.84832 1.28971 1.24784 0.78838 0.71336 0.94347 1.90630 1.59903 1.45451 1.43432 1.21563 0.99177 1.04988 0.87363 1.19494 0.88099 0.98028 0.98348 1.21029 0.92471 1.51762 0.91169 0.90659 1.24956 0.98193 0.94238 0.95746 1.69905 1.12622 1.50691 1.20726 0.86798 0.80200 0.78793 0.83780 1.20156 1.21366 1.18513 1.68387 1.07247 1.31297 1.28072 0.92689 0.90987 0.90089 0.91708 0.90401 0.91471 0.75308 0.74882 0.88243 0.88242 0.88224 0.88192 0.95490 0.95935 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 10.42 59.84 0.62 1.28 16 2 N -0.58 -5.65 3.36 -191.75 -0.64 -6.30 16 3 C 0.10 0.80 10.17 59.85 0.61 1.40 16 4 C 0.63 8.10 8.19 -322.13 -2.64 5.46 16 5 N -0.65 -8.02 9.29 -14.75 -0.14 -8.16 16 6 C 0.63 7.65 8.76 -322.13 -2.82 4.83 16 7 N -0.81 -6.03 9.05 29.85 0.27 -5.76 16 8 N -0.62 -8.72 10.46 -11.52 -0.12 -8.84 16 9 C 0.44 6.43 7.33 -156.58 -1.15 5.29 16 10 C 0.14 2.00 5.94 36.00 0.21 2.21 16 11 O -0.35 -6.03 10.20 -39.27 -0.40 -6.43 16 12 C 0.46 8.80 7.96 36.01 0.29 9.09 16 13 O -0.51 -10.76 15.73 -18.75 -0.29 -11.06 16 14 C -0.09 -1.85 5.75 -27.88 -0.16 -2.01 16 15 C 0.00 -0.05 3.33 -27.89 -0.09 -0.15 16 16 C -0.53 -14.92 9.66 -34.44 -0.33 -15.26 16 17 H 0.08 2.23 7.99 -52.48 -0.42 1.82 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 19 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 20 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 24 N -0.62 -8.82 9.64 -11.52 -0.11 -8.93 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.29 7.92 -51.93 -0.41 -0.13 16 27 H 0.08 0.57 7.37 -51.93 -0.38 0.19 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.35 7.79 -51.93 -0.40 -0.05 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.42 2.12 8.95 -40.82 -0.37 1.75 16 32 H 0.42 2.48 8.95 -40.82 -0.37 2.12 16 33 H 0.10 1.37 8.13 -51.93 -0.42 0.95 16 34 H 0.10 1.37 8.13 -51.93 -0.42 0.94 16 35 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 36 H 0.10 1.86 8.14 -51.93 -0.42 1.43 16 37 H 0.03 0.68 7.16 -51.93 -0.37 0.31 16 38 H 0.02 0.56 7.53 -51.93 -0.39 0.17 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -35.66 341.84 -10.98 -46.64 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.24 Total: -1.00 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: -5.56 Total: 14.11 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: 0.03 Total: -64.96 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.70 Total: -17.49 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.66 -10.98 -46.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.847 kcal (2) G-P(sol) polarization free energy of solvation -35.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds