Wall clock time and date at job start Tue Mar 31 2020 03:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00253 * 2 1 4 4 C 1.38000 * 119.99850 * 179.97438 * 2 1 3 5 5 N 1.32868 * 120.04291 * 0.02562 * 4 2 1 6 6 C 1.32839 * 119.82042 * 180.02562 * 5 4 2 7 7 N 1.37995 * 120.04079 * 179.97438 * 6 5 4 8 8 N 1.33129 * 119.91785 * 0.25522 * 6 5 4 9 9 C 1.32136 * 120.08131 * 359.48910 * 8 6 5 10 10 C 1.50694 * 119.91096 * 180.23077 * 9 8 6 11 11 O 1.45206 * 109.47314 * 270.27611 * 10 9 8 12 12 C 1.34233 * 116.99848 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00254 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99560 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.46795 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47117 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99755 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00340 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00425 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00032 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46993 * 89.99468 * 20 18 16 22 22 H 1.48497 * 109.47418 * 210.00251 * 20 18 16 23 23 H 1.48501 * 109.46828 * 329.99947 * 20 18 16 24 24 N 1.32165 * 120.17762 * 0.51349 * 9 8 6 25 25 H 1.09000 * 109.47121 * 269.99517 * 1 2 3 26 26 H 1.09003 * 109.47292 * 29.99863 * 1 2 3 27 27 H 1.09002 * 109.47189 * 150.00098 * 1 2 3 28 28 H 1.08998 * 109.47435 * 240.00466 * 3 2 1 29 29 H 1.09005 * 109.46616 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.46989 * 119.99990 * 3 2 1 31 31 H 0.96996 * 120.00297 * 0.02562 * 7 6 5 32 32 H 0.97009 * 120.00094 * 179.72794 * 7 6 5 33 33 H 1.08999 * 109.47153 * 30.28043 * 10 9 8 34 34 H 1.09000 * 109.47498 * 150.28025 * 10 9 8 35 35 H 1.09003 * 109.46624 * 299.99886 * 14 12 11 36 36 H 1.08997 * 109.47189 * 59.99818 * 14 12 11 37 37 H 1.08991 * 109.47428 * 299.99741 * 15 14 12 38 38 H 1.08997 * 109.47447 * 59.99918 * 15 14 12 39 39 H 0.96997 * 120.00209 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1549 -1.1951 0.0005 5 7 1.4914 -2.3463 0.0005 6 6 2.1600 -3.4941 0.0016 7 7 1.4755 -4.6923 0.0021 8 7 3.4913 -3.4871 0.0077 9 6 4.1476 -2.3402 0.0026 10 6 5.6545 -2.3368 0.0044 11 8 6.1370 -2.3353 1.3739 12 6 7.4675 -2.3327 1.5513 13 8 8.2047 -2.3313 0.5939 14 6 8.0419 -2.3316 2.9446 15 6 9.5699 -2.3280 2.8662 16 6 10.1443 -2.3262 4.2594 17 1 9.4854 -2.3279 5.1152 18 6 11.5109 -2.3235 4.4417 19 7 12.0123 -2.3214 5.6575 20 14 12.6506 -2.3212 2.9616 21 1 12.9497 -0.9205 2.5693 22 1 13.9147 -3.0187 3.3091 23 1 11.9933 -3.0226 1.8297 24 7 3.4859 -1.1961 0.0016 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 2.8241 1.3265 -0.8900 29 1 1.4891 2.0972 0.0005 30 1 2.8242 1.3264 0.8900 31 1 0.5056 -4.6968 0.0014 32 1 1.9644 -5.5302 -0.0011 33 1 6.0205 -3.2260 -0.5088 34 1 6.0165 -1.4461 -0.5092 35 1 7.7036 -1.4422 3.4763 36 1 7.7071 -3.2221 3.4763 37 1 9.9085 -3.2170 2.3344 38 1 9.9044 -1.4372 2.3346 39 1 12.9737 -2.3191 5.7857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:04 Heat of formation + Delta-G solvation = -25.661670 kcal Electronic energy + Delta-G solvation = -22793.467578 eV Core-core repulsion = 19157.495200 eV Total energy + Delta-G solvation = -3635.972378 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.64776 -41.50712 -38.45465 -37.90180 -36.52948 -35.61865 -34.25706 -33.42804 -32.72167 -30.26193 -28.93837 -28.09267 -27.13432 -24.33091 -23.60997 -22.80069 -21.48111 -20.28969 -19.38534 -19.03572 -18.41542 -17.72735 -17.32065 -17.12191 -17.01705 -16.68452 -16.25924 -15.54550 -15.48350 -15.28202 -15.21677 -14.93150 -14.69820 -13.97798 -13.92083 -13.49557 -13.33324 -13.28684 -13.00321 -12.91015 -12.82970 -12.25176 -12.18769 -12.01280 -11.88371 -11.76295 -11.47949 -11.38384 -10.76588 -10.73840 -10.62475 -10.01455 -9.34022 -8.29670 -6.34082 -0.25590 0.27742 1.18291 1.37189 1.37571 1.39503 1.53399 1.66165 2.06804 2.37180 2.60795 2.90224 3.05894 3.24304 3.66398 3.86054 4.09001 4.16343 4.25994 4.36848 4.40136 4.43061 4.51136 4.73507 4.76753 4.84324 4.93083 4.98602 5.22090 5.30106 5.32945 5.38796 5.39107 5.60197 5.88763 6.09379 6.16928 6.23214 6.65094 6.67836 6.76798 7.31020 7.44461 8.85948 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024460 B = 0.002768 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.454321 B =10113.218001 C =10568.320239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.578 5.578 3 C 0.102 3.898 4 C 0.606 3.394 5 N -0.650 5.650 6 C 0.616 3.384 7 N -0.782 5.782 8 N -0.637 5.637 9 C 0.425 3.575 10 C 0.138 3.862 11 O -0.352 6.352 12 C 0.476 3.524 13 O -0.531 6.531 14 C -0.089 4.089 15 C 0.002 3.998 16 C -0.532 4.532 17 H 0.049 0.951 18 C 0.013 3.987 19 N -0.944 5.944 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.255 1.255 24 N -0.631 5.631 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.114 0.886 30 H 0.052 0.948 31 H 0.428 0.572 32 H 0.428 0.572 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.021 0.979 38 H 0.020 0.980 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.236 2.260 -15.440 32.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.294 5.294 3 C -0.040 4.040 4 C 0.242 3.758 5 N -0.392 5.392 6 C 0.248 3.752 7 N -0.334 5.334 8 N -0.374 5.374 9 C 0.145 3.855 10 C 0.062 3.938 11 O -0.268 6.268 12 C 0.321 3.679 13 O -0.420 6.420 14 C -0.127 4.127 15 C -0.036 4.036 16 C -0.569 4.569 17 H 0.068 0.932 18 C -0.184 4.184 19 N -0.584 5.584 20 Si 0.764 3.236 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.179 1.179 24 N -0.367 5.367 25 H 0.078 0.922 26 H 0.121 0.879 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.132 0.868 30 H 0.071 0.929 31 H 0.262 0.738 32 H 0.262 0.738 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -28.059 2.462 -15.640 32.218 hybrid contribution 0.636 -0.430 -0.297 0.823 sum -27.423 2.032 -15.937 31.782 Atomic orbital electron populations 1.21916 0.75264 1.04525 1.02688 1.46315 1.07346 1.01551 1.74190 1.21822 0.97463 0.82553 1.02165 1.19341 0.84882 0.86951 0.84643 1.67997 1.40340 0.97267 1.33611 1.19373 0.84908 0.87395 0.83516 1.41662 1.10426 1.02803 1.78465 1.68349 1.08453 1.31200 1.29429 1.22233 0.95825 0.82742 0.84734 1.21434 0.84819 1.05654 0.81912 1.86525 1.25245 1.84272 1.30768 1.24332 0.79331 0.70779 0.93464 1.90623 1.60620 1.46724 1.44000 1.21354 0.96355 1.06407 0.88558 1.19336 0.91167 0.97424 0.95623 1.21334 0.92432 1.50801 0.92379 0.93228 1.25824 1.00051 0.94095 0.98478 1.70026 1.13246 1.52237 1.22905 0.85797 0.78239 0.79278 0.80251 1.19199 1.20585 1.17900 1.68366 1.08162 1.31204 1.29014 0.92200 0.87885 0.90761 0.92259 0.86802 0.92901 0.73798 0.73849 0.87503 0.87539 0.86879 0.86896 0.96104 0.96209 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 10.42 127.77 1.33 2.37 16 2 N -0.58 -10.33 3.36 -760.56 -2.56 -12.89 16 3 C 0.10 1.39 10.17 127.77 1.30 2.69 16 4 C 0.61 15.18 8.19 261.25 2.14 17.32 16 5 N -0.65 -15.37 9.29 -200.58 -1.86 -17.23 16 6 C 0.62 14.30 8.76 261.25 2.29 16.59 16 7 N -0.78 -10.44 9.05 -59.46 -0.54 -10.97 16 8 N -0.64 -17.46 10.46 -190.36 -1.99 -19.45 16 9 C 0.42 12.29 7.33 138.53 1.02 13.31 16 10 C 0.14 3.94 5.94 71.23 0.42 4.36 16 11 O -0.35 -11.68 10.20 -51.44 -0.52 -12.21 16 12 C 0.48 17.58 7.96 71.24 0.57 18.15 16 13 O -0.53 -21.95 15.73 21.97 0.35 -21.60 16 14 C -0.09 -3.46 5.75 29.85 0.17 -3.29 16 15 C 0.00 0.10 3.33 29.85 0.10 0.20 16 16 C -0.53 -30.32 9.66 25.60 0.25 -30.07 16 17 H 0.05 3.01 7.99 -2.91 -0.02 2.98 16 18 C 0.01 0.78 5.47 84.65 0.46 1.24 16 19 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 20 Si 0.94 45.58 27.47 68.60 1.88 47.47 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.26 -12.04 6.54 99.48 0.65 -11.39 16 24 N -0.63 -17.83 9.64 -190.35 -1.83 -19.66 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.10 0.47 7.92 -2.39 -0.02 0.45 16 27 H 0.07 0.92 7.37 -2.39 -0.02 0.90 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 0.69 7.79 -2.38 -0.02 0.68 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.43 3.53 8.95 -92.71 -0.83 2.71 16 32 H 0.43 4.34 8.95 -92.70 -0.83 3.51 16 33 H 0.11 2.87 8.13 -2.39 -0.02 2.85 16 34 H 0.11 2.87 8.13 -2.39 -0.02 2.85 16 35 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 36 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 37 H 0.02 1.02 7.16 -2.39 -0.02 1.01 16 38 H 0.02 0.96 7.53 -2.39 -0.02 0.94 16 39 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -76.36 341.84 2.65 -73.71 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -0.62 Total: 8.47 kcal Atomic # 6 Polarization: 32.83 SS G_CDS: 10.05 Total: 42.88 kcal Atomic # 7 Polarization: -130.23 SS G_CDS: -8.48 Total: -138.71 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.18 Total: -33.81 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.88 Total: 47.47 kcal Total: -76.36 2.65 -73.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.045 kcal (2) G-P(sol) polarization free energy of solvation -76.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds