Wall clock time and date at job start Tue Mar 31 2020 04:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99680 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99880 * 3 2 1 5 5 H 1.48503 * 109.47261 * 150.00060 * 3 2 1 6 6 H 1.48500 * 109.47454 * 30.00053 * 3 2 1 7 7 C 1.38942 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00210 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99872 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00246 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99735 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47170 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00067 * 180.02562 * 13 12 10 15 15 O 1.21590 * 120.00051 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99963 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99996 * 179.97438 * 16 14 13 18 18 H 1.08997 * 112.88763 * 26.84601 * 17 16 14 19 19 C 1.53960 * 113.66187 * 255.49078 * 17 16 14 20 20 C 1.53227 * 86.25294 * 218.96351 * 19 17 16 21 21 H 1.09003 * 111.34429 * 274.74784 * 20 19 17 22 22 C 1.50505 * 115.71592 * 146.49236 * 20 19 17 23 23 C 1.51631 * 114.39247 * 290.09489 * 22 20 19 24 24 C 1.52605 * 111.07233 * 313.08613 * 23 22 20 25 25 C 1.52980 * 108.83578 * 63.70058 * 24 23 22 26 26 C 1.51200 * 108.94213 * 296.54202 * 25 24 23 27 27 H 1.09001 * 113.09914 * 274.19134 * 26 25 24 28 28 H 0.97009 * 120.00103 * 180.02562 * 1 2 3 29 29 H 0.96998 * 119.99825 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47387 * 299.99688 * 12 10 9 31 31 H 1.08998 * 109.46985 * 59.99655 * 12 10 9 32 32 H 0.97003 * 120.00107 * 359.97438 * 13 12 10 33 33 H 0.97003 * 120.00211 * 359.97438 * 16 14 13 34 34 H 1.08996 * 113.75397 * 333.30021 * 19 17 16 35 35 H 1.09004 * 113.74855 * 104.63091 * 19 17 16 36 36 H 1.08996 * 108.49929 * 51.36860 * 22 20 19 37 37 H 1.09006 * 108.49905 * 168.98126 * 22 20 19 38 38 H 1.08998 * 109.16019 * 73.49717 * 23 22 20 39 39 H 1.08994 * 109.16008 * 192.73148 * 23 22 20 40 40 H 1.09006 * 109.57457 * 183.50052 * 24 23 22 41 41 H 1.08991 * 109.58164 * 303.88780 * 24 23 22 42 42 H 1.09002 * 109.51694 * 56.25579 * 25 24 23 43 43 H 1.08995 * 109.51692 * 176.36196 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 3.5456 1.4403 0.7000 6 1 1.4454 2.6527 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2102 -3.5577 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1959 -5.9764 -0.0027 14 6 1.7467 -7.2471 -0.0038 15 8 0.5513 -7.4693 -0.0039 16 7 2.6225 -8.2715 -0.0037 17 6 2.1343 -9.6527 -0.0043 18 1 1.1485 -9.7536 -0.4582 19 6 2.2608 -10.3534 1.3607 20 6 2.6548 -11.6047 0.5689 21 1 1.7759 -12.1601 0.2415 22 6 3.6545 -12.5113 1.2352 23 6 5.0553 -11.9381 1.3279 24 6 5.4933 -11.3413 -0.0065 25 6 4.5779 -10.1632 -0.3450 26 6 3.1667 -10.6746 -0.5265 27 1 2.9672 -11.0297 -1.5375 28 1 -0.4851 -0.8401 0.0004 29 1 0.3534 -2.3906 -0.0016 30 1 0.6169 -4.9209 0.8876 31 1 0.6176 -4.9204 -0.8924 32 1 3.1496 -5.7992 -0.0030 33 1 3.5762 -8.0942 -0.0033 34 1 3.0625 -9.9582 1.9845 35 1 1.3149 -10.4510 1.8935 36 1 3.3035 -12.7315 2.2433 37 1 3.7017 -13.4452 0.6750 38 1 5.0737 -11.1600 2.0910 39 1 5.7483 -12.7310 1.6089 40 1 6.5235 -10.9931 0.0697 41 1 5.4185 -12.0980 -0.7873 42 1 4.6002 -9.4391 0.4695 43 1 4.9207 -9.6881 -1.2641 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883695311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:44 Heat of formation + Delta-G solvation = -61.626286 kcal Electronic energy + Delta-G solvation = -23534.517988 eV Core-core repulsion = 20000.526411 eV Total energy + Delta-G solvation = -3533.991577 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -41.24531 -39.47149 -38.24952 -35.15782 -34.65327 -33.78451 -33.01480 -31.32461 -31.14392 -27.61700 -26.46837 -24.62776 -24.04718 -22.83132 -21.27382 -20.47467 -19.91139 -18.50685 -18.07529 -18.00877 -16.80312 -16.20477 -15.70754 -15.46988 -15.02653 -14.91455 -14.69540 -14.15401 -14.09739 -14.03452 -13.78937 -13.62726 -13.13384 -12.91025 -12.39643 -12.22586 -11.98347 -11.87372 -11.74299 -11.41862 -11.30470 -11.22354 -11.00523 -10.47700 -10.26142 -10.20663 -10.18300 -10.04829 -9.93885 -9.66858 -9.10184 -8.66769 -8.62474 -8.15208 -6.84211 -3.98698 2.82375 3.23988 3.31311 3.35732 3.50598 3.71127 4.08374 4.16640 4.17853 4.35833 4.44456 4.58947 4.72237 4.76191 4.80453 4.91261 5.08894 5.11316 5.17781 5.27281 5.38681 5.46858 5.53733 5.61616 5.66376 5.74436 5.77220 5.79497 5.81003 5.87665 5.89516 5.91304 6.02187 6.13407 6.21589 6.57485 6.69074 7.10010 7.68739 7.98020 8.21314 8.46721 8.64793 8.78433 9.35333 9.69464 10.58762 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.037212 B = 0.002492 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.272473 B =11233.347399 C =11725.857673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.006 4.006 3 Si 1.095 2.905 4 H -0.283 1.283 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.386 4.386 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.432 3.568 11 O -0.591 6.591 12 C 0.129 3.871 13 N -0.726 5.726 14 C 0.704 3.296 15 O -0.599 6.599 16 N -0.738 5.738 17 C 0.145 3.855 18 H 0.113 0.887 19 C -0.150 4.150 20 C -0.099 4.099 21 H 0.086 0.914 22 C -0.103 4.103 23 C -0.118 4.118 24 C -0.116 4.116 25 C -0.110 4.110 26 C -0.108 4.108 27 H 0.082 0.918 28 H 0.264 0.736 29 H 0.379 0.621 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.406 0.594 33 H 0.397 0.603 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.170 -23.540 0.808 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.210 4.210 3 Si 0.921 3.079 4 H -0.210 1.210 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.515 4.515 8 H 0.119 0.881 9 N -0.199 5.199 10 C 0.218 3.782 11 O -0.477 6.477 12 C 0.000 4.000 13 N -0.383 5.383 14 C 0.404 3.596 15 O -0.478 6.478 16 N -0.394 5.394 17 C 0.039 3.961 18 H 0.131 0.869 19 C -0.189 4.189 20 C -0.117 4.117 21 H 0.105 0.895 22 C -0.141 4.141 23 C -0.155 4.155 24 C -0.153 4.153 25 C -0.147 4.147 26 C -0.127 4.127 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.213 0.787 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.243 0.757 33 H 0.233 0.767 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.675 -22.003 0.810 23.008 hybrid contribution 0.360 -1.545 0.001 1.587 sum 7.036 -23.548 0.811 24.590 Atomic orbital electron populations 1.70866 1.06566 1.29706 1.46112 1.26591 0.96519 1.02786 0.95101 0.83075 0.74369 0.73244 0.77239 1.20984 1.20855 1.20527 1.20596 0.94781 0.83636 1.52507 0.88055 1.41862 1.08490 1.05412 1.64089 1.19693 0.88322 0.84768 0.85442 1.90492 1.13686 1.86736 1.56818 1.20761 0.91287 0.84910 1.03024 1.44772 1.11117 1.03392 1.79008 1.15931 0.85356 0.80593 0.77738 1.90892 1.14132 1.84278 1.58506 1.45199 1.08964 1.04834 1.80414 1.22529 0.98553 0.78436 0.96602 0.86945 1.23505 1.02034 0.95945 0.97389 1.21445 0.98761 0.94881 0.96662 0.89549 1.20514 0.94476 0.98421 1.00679 1.21158 0.96249 1.00406 0.97716 1.21375 0.98723 0.97701 0.97522 1.21085 0.93628 0.98033 1.01978 1.22356 0.95106 0.96009 0.99243 0.89965 0.92469 0.78703 0.90102 0.90107 0.75656 0.76686 0.89747 0.91096 0.91909 0.92385 0.92162 0.92064 0.91834 0.91835 0.91429 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.78 13.68 55.50 0.76 -24.02 16 2 C -0.01 -0.17 5.50 -17.47 -0.10 -0.27 16 3 Si 1.10 23.83 29.92 -169.99 -5.09 18.75 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.39 -10.65 9.68 -14.94 -0.14 -10.79 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.56 -13.96 5.28 -10.96 -0.06 -14.02 16 10 C 0.43 10.02 7.85 -10.98 -0.09 9.93 16 11 O -0.59 -15.33 15.24 5.55 0.08 -15.24 16 12 C 0.13 2.43 6.15 -5.19 -0.03 2.39 16 13 N -0.73 -12.41 5.53 -66.41 -0.37 -12.78 16 14 C 0.70 11.62 8.57 -86.92 -0.74 10.88 16 15 O -0.60 -11.85 15.98 5.29 0.08 -11.77 16 16 N -0.74 -9.04 5.15 -57.54 -0.30 -9.34 16 17 C 0.14 1.54 4.04 -66.77 -0.27 1.27 16 18 H 0.11 1.38 7.54 -51.93 -0.39 0.99 16 19 C -0.15 -1.40 7.09 -26.11 -0.19 -1.58 16 20 C -0.10 -0.74 3.68 -92.04 -0.34 -1.08 16 21 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 22 C -0.10 -0.68 5.50 -28.67 -0.16 -0.83 16 23 C -0.12 -0.76 5.75 -27.63 -0.16 -0.92 16 24 C -0.12 -0.75 5.89 -26.94 -0.16 -0.91 16 25 C -0.11 -0.81 4.48 -27.65 -0.12 -0.93 16 26 C -0.11 -0.86 4.15 -91.05 -0.38 -1.24 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.26 7.04 6.78 -40.82 -0.28 6.76 16 29 H 0.38 8.76 6.73 -40.82 -0.27 8.48 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.41 6.75 7.45 -40.82 -0.30 6.45 16 33 H 0.40 4.08 6.30 -40.82 -0.26 3.82 16 34 H 0.08 0.80 7.44 -51.93 -0.39 0.41 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.42 7.94 -51.93 -0.41 0.01 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.52 5.72 -51.93 -0.30 0.23 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 343.06 15.07 5.17 5.17 Total: -1.00 -32.68 343.06 -9.00 -41.68 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -6.42 Total: 15.64 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -2.87 Total: 5.92 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.04 Total: -60.16 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: 0.17 Total: -27.01 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.09 Total: 18.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.68 -9.00 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883695311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.944 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds