Wall clock time and date at job start Tue Mar 31 2020 04:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99680 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99880 * 3 2 1 5 5 H 1.48503 * 109.47261 * 150.00060 * 3 2 1 6 6 H 1.48500 * 109.47454 * 30.00053 * 3 2 1 7 7 C 1.38942 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00210 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99872 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00246 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99735 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47170 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00067 * 180.02562 * 13 12 10 15 15 O 1.21590 * 120.00051 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99963 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99996 * 179.97438 * 16 14 13 18 18 H 1.08997 * 112.88763 * 26.84601 * 17 16 14 19 19 C 1.53960 * 113.66187 * 255.49078 * 17 16 14 20 20 C 1.53227 * 86.25294 * 218.96351 * 19 17 16 21 21 H 1.09003 * 111.34429 * 274.74784 * 20 19 17 22 22 C 1.50505 * 115.71592 * 146.49236 * 20 19 17 23 23 C 1.51631 * 114.39247 * 290.09489 * 22 20 19 24 24 C 1.52605 * 111.07233 * 313.08613 * 23 22 20 25 25 C 1.52980 * 108.83578 * 63.70058 * 24 23 22 26 26 C 1.51200 * 108.94213 * 296.54202 * 25 24 23 27 27 H 1.09001 * 113.09914 * 274.19134 * 26 25 24 28 28 H 0.97009 * 120.00103 * 180.02562 * 1 2 3 29 29 H 0.96998 * 119.99825 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47387 * 299.99688 * 12 10 9 31 31 H 1.08998 * 109.46985 * 59.99655 * 12 10 9 32 32 H 0.97003 * 120.00107 * 359.97438 * 13 12 10 33 33 H 0.97003 * 120.00211 * 359.97438 * 16 14 13 34 34 H 1.08996 * 113.75397 * 333.30021 * 19 17 16 35 35 H 1.09004 * 113.74855 * 104.63091 * 19 17 16 36 36 H 1.08996 * 108.49929 * 51.36860 * 22 20 19 37 37 H 1.09006 * 108.49905 * 168.98126 * 22 20 19 38 38 H 1.08998 * 109.16019 * 73.49717 * 23 22 20 39 39 H 1.08994 * 109.16008 * 192.73148 * 23 22 20 40 40 H 1.09006 * 109.57457 * 183.50052 * 24 23 22 41 41 H 1.08991 * 109.58164 * 303.88780 * 24 23 22 42 42 H 1.09002 * 109.51694 * 56.25579 * 25 24 23 43 43 H 1.08995 * 109.51692 * 176.36196 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 3.5456 1.4403 0.7000 6 1 1.4454 2.6527 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2102 -3.5577 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1959 -5.9764 -0.0027 14 6 1.7467 -7.2471 -0.0038 15 8 0.5513 -7.4693 -0.0039 16 7 2.6225 -8.2715 -0.0037 17 6 2.1343 -9.6527 -0.0043 18 1 1.1485 -9.7536 -0.4582 19 6 2.2608 -10.3534 1.3607 20 6 2.6548 -11.6047 0.5689 21 1 1.7759 -12.1601 0.2415 22 6 3.6545 -12.5113 1.2352 23 6 5.0553 -11.9381 1.3279 24 6 5.4933 -11.3413 -0.0065 25 6 4.5779 -10.1632 -0.3450 26 6 3.1667 -10.6746 -0.5265 27 1 2.9672 -11.0297 -1.5375 28 1 -0.4851 -0.8401 0.0004 29 1 0.3534 -2.3906 -0.0016 30 1 0.6169 -4.9209 0.8876 31 1 0.6176 -4.9204 -0.8924 32 1 3.1496 -5.7992 -0.0030 33 1 3.5762 -8.0942 -0.0033 34 1 3.0625 -9.9582 1.9845 35 1 1.3149 -10.4510 1.8935 36 1 3.3035 -12.7315 2.2433 37 1 3.7017 -13.4452 0.6750 38 1 5.0737 -11.1600 2.0910 39 1 5.7483 -12.7310 1.6089 40 1 6.5235 -10.9931 0.0697 41 1 5.4185 -12.0980 -0.7873 42 1 4.6002 -9.4391 0.4695 43 1 4.9207 -9.6881 -1.2641 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883695311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:40 Heat of formation + Delta-G solvation = -84.202212 kcal Electronic energy + Delta-G solvation = -23535.496954 eV Core-core repulsion = 20000.526411 eV Total energy + Delta-G solvation = -3534.970543 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.07197 -40.88332 -39.97117 -36.64074 -35.89761 -35.36125 -33.94283 -33.23140 -31.90545 -29.16114 -27.22408 -26.27668 -25.08751 -23.57705 -22.21349 -21.68835 -21.51931 -20.09547 -19.82383 -18.68327 -17.87225 -17.59910 -17.08718 -16.89738 -16.55645 -15.87577 -15.79574 -15.64695 -15.40207 -15.29723 -14.87838 -14.54996 -14.16132 -14.01026 -13.64390 -13.53892 -13.39141 -12.83990 -12.78691 -12.52039 -12.40251 -12.07443 -11.96440 -11.91784 -11.85566 -11.58884 -11.45729 -11.01363 -10.85660 -10.79272 -10.62554 -10.41219 -10.18810 -9.79237 -8.97164 -6.12990 1.46875 1.53308 1.58576 1.83287 1.87804 2.05586 2.40652 2.88862 3.12632 3.26787 3.39052 3.53120 3.75621 3.85042 3.96616 4.16131 4.22698 4.27759 4.32655 4.35231 4.46604 4.52652 4.65659 4.73955 4.82052 4.89631 4.98827 5.07114 5.12313 5.19376 5.23400 5.23817 5.36526 5.41982 5.48414 5.57540 5.59246 5.64330 5.88376 5.94767 6.45945 6.61509 6.97529 7.32934 7.48474 7.73819 8.49660 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.037212 B = 0.002492 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.272473 B =11233.347399 C =11725.857673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.040 4.040 3 Si 1.138 2.862 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.411 4.411 8 H 0.081 0.919 9 N -0.573 5.573 10 C 0.439 3.561 11 O -0.618 6.618 12 C 0.142 3.858 13 N -0.726 5.726 14 C 0.703 3.297 15 O -0.633 6.633 16 N -0.721 5.721 17 C 0.130 3.870 18 H 0.095 0.905 19 C -0.148 4.148 20 C -0.089 4.089 21 H 0.092 0.908 22 C -0.102 4.102 23 C -0.118 4.118 24 C -0.113 4.113 25 C -0.111 4.111 26 C -0.095 4.095 27 H 0.089 0.911 28 H 0.261 0.739 29 H 0.387 0.613 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.409 0.591 33 H 0.408 0.592 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.143 -24.717 0.703 26.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.239 4.239 3 Si 0.957 3.043 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.540 4.540 8 H 0.099 0.901 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.505 6.505 12 C 0.013 3.987 13 N -0.383 5.383 14 C 0.403 3.597 15 O -0.515 6.515 16 N -0.377 5.377 17 C 0.024 3.976 18 H 0.113 0.887 19 C -0.187 4.187 20 C -0.108 4.108 21 H 0.111 0.889 22 C -0.140 4.140 23 C -0.156 4.156 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.114 4.114 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.222 0.778 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.247 0.753 33 H 0.246 0.754 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.668 -23.238 0.702 24.480 hybrid contribution 0.072 -1.299 0.041 1.301 sum 7.740 -24.536 0.743 25.739 Atomic orbital electron populations 1.70938 1.07152 1.29745 1.47265 1.27927 0.96621 1.05545 0.93798 0.82574 0.73695 0.69917 0.78110 1.19497 1.19905 1.19902 1.20607 0.94178 0.85160 1.54095 0.90114 1.41895 1.08895 1.05369 1.64926 1.20386 0.88143 0.85701 0.83171 1.90472 1.15171 1.87464 1.57384 1.20576 0.91056 0.83004 1.04051 1.44700 1.10893 1.03325 1.79419 1.16051 0.85321 0.80821 0.77522 1.90869 1.15737 1.84696 1.60156 1.45159 1.09060 1.04602 1.78878 1.22767 0.98820 0.77855 0.98116 0.88726 1.23481 1.01674 0.96876 0.96673 1.21420 0.99282 0.94310 0.95779 0.88945 1.20511 0.94176 0.98471 1.00831 1.21171 0.96381 1.00530 0.97491 1.21360 0.98696 0.97314 0.97664 1.21108 0.93364 0.98459 1.01973 1.22334 0.94625 0.94686 0.99774 0.89267 0.92809 0.77845 0.89041 0.88995 0.75304 0.75354 0.89714 0.92000 0.91701 0.91336 0.92856 0.91079 0.91309 0.91296 0.91927 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.44 13.68 21.66 0.30 -50.14 16 2 C -0.04 -2.13 5.50 84.93 0.47 -1.66 16 3 Si 1.14 47.35 29.92 68.60 2.05 49.40 16 4 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.41 -22.91 9.68 84.04 0.81 -22.09 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -28.69 5.28 -306.99 -1.62 -30.31 16 10 C 0.44 20.34 7.85 87.66 0.69 21.03 16 11 O -0.62 -32.11 15.24 -3.05 -0.05 -32.16 16 12 C 0.14 5.26 6.15 85.63 0.53 5.78 16 13 N -0.73 -24.34 5.53 -482.30 -2.67 -27.01 16 14 C 0.70 22.82 8.57 179.05 1.53 24.35 16 15 O -0.63 -24.90 15.98 -4.00 -0.06 -24.96 16 16 N -0.72 -17.09 5.15 -454.23 -2.34 -19.43 16 17 C 0.13 2.66 4.04 45.74 0.18 2.85 16 18 H 0.09 2.32 7.54 -2.39 -0.02 2.31 16 19 C -0.15 -2.63 7.09 30.99 0.22 -2.41 16 20 C -0.09 -1.18 3.68 -11.71 -0.04 -1.22 16 21 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 22 C -0.10 -1.11 5.50 29.34 0.16 -0.95 16 23 C -0.12 -1.26 5.75 30.01 0.17 -1.08 16 24 C -0.11 -1.20 5.89 30.46 0.18 -1.02 16 25 C -0.11 -1.43 4.48 30.00 0.13 -1.29 16 26 C -0.09 -1.36 4.15 -11.07 -0.05 -1.41 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.26 14.00 6.78 -92.70 -0.63 13.38 16 29 H 0.39 18.01 6.73 -92.71 -0.62 17.38 16 30 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.41 13.34 7.45 -92.71 -0.69 12.65 16 33 H 0.41 7.91 6.30 -92.71 -0.58 7.32 16 34 H 0.08 1.51 7.44 -2.39 -0.02 1.49 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.05 0.65 7.94 -2.39 -0.02 0.63 16 39 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.87 5.72 -2.39 -0.01 0.85 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -69.24 343.06 -0.11 -69.35 By element: Atomic # 1 Polarization: 45.10 SS G_CDS: -0.71 Total: 44.39 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 4.99 Total: 20.88 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -6.33 Total: -126.89 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: -0.11 Total: -57.12 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.05 Total: 49.40 kcal Total: -69.24 -0.11 -69.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883695311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.854 kcal (2) G-P(sol) polarization free energy of solvation -69.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds