Wall clock time and date at job start Tue Mar 31 2020 03:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 120.00578 * 2 1 4 4 C 1.50703 * 119.99631 * 179.97438 * 2 1 3 5 5 H 1.09000 * 110.33234 * 128.36855 * 4 2 1 6 6 O 1.44429 * 110.37425 * 6.11492 * 4 2 1 7 7 C 1.44521 * 105.22621 * 200.75021 * 6 4 2 8 8 C 1.54481 * 104.87765 * 40.35952 * 7 6 4 9 9 C 1.54484 * 110.37281 * 250.62042 * 4 2 1 10 10 H 1.09006 * 110.50658 * 261.59376 * 9 4 2 11 11 C 1.50700 * 110.51203 * 24.16140 * 9 4 2 12 12 O 1.21287 * 119.99694 * 59.40913 * 11 9 4 13 13 N 1.34769 * 120.00249 * 239.41222 * 11 9 4 14 14 C 1.47427 * 125.64978 * 359.68822 * 13 11 9 15 15 C 1.55127 * 104.72330 * 155.82043 * 14 13 11 16 16 C 1.55158 * 101.48431 * 37.29590 * 15 14 13 17 17 O 1.42904 * 110.87024 * 82.76939 * 16 15 14 18 18 C 1.50698 * 110.71849 * 205.96692 * 16 15 14 19 19 H 1.08002 * 120.00025 * 116.40311 * 18 16 15 20 20 C 1.37874 * 120.00267 * 296.39598 * 18 16 15 21 21 N 1.31519 * 120.00049 * 5.96088 * 20 18 16 22 22 Si 1.86803 * 120.00111 * 185.96150 * 20 18 16 23 23 H 1.48502 * 109.47151 * 94.98212 * 22 20 18 24 24 H 1.48497 * 109.47116 * 214.97842 * 22 20 18 25 25 H 1.48497 * 109.47394 * 334.98128 * 22 20 18 26 26 C 1.47026 * 125.65034 * 180.02562 * 13 11 9 27 27 H 1.07998 * 120.00108 * 180.02562 * 1 2 3 28 28 H 1.07996 * 119.99378 * 359.72736 * 1 2 3 29 29 H 1.09000 * 109.46633 * 355.37683 * 3 2 1 30 30 H 1.08995 * 109.47399 * 115.37786 * 3 2 1 31 31 H 1.08998 * 109.47043 * 235.38597 * 3 2 1 32 32 H 1.08997 * 110.27131 * 281.53672 * 7 6 4 33 33 H 1.09002 * 110.39814 * 159.24569 * 7 6 4 34 34 H 1.08995 * 110.50827 * 217.44971 * 8 7 6 35 35 H 1.08996 * 110.50952 * 94.73571 * 8 7 6 36 36 H 1.09003 * 110.36665 * 274.75358 * 14 13 11 37 37 H 1.09003 * 110.36555 * 37.07066 * 14 13 11 38 38 H 1.08993 * 111.19366 * 279.19411 * 15 14 13 39 39 H 1.09004 * 110.90489 * 155.27713 * 15 14 13 40 40 H 0.96695 * 114.00361 * 69.57572 * 17 16 15 41 41 H 0.96999 * 120.00059 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.87949 * 300.43775 * 26 13 11 43 43 H 1.09000 * 109.88056 * 61.60052 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 2.8022 -1.3164 -0.8008 6 8 1.1489 -2.4138 -0.1431 7 6 1.8651 -3.5642 0.3591 8 6 2.6151 -3.0503 1.6081 9 6 2.7485 -1.5301 1.3668 10 1 3.7980 -1.2393 1.3202 11 6 2.0360 -0.7592 2.4481 12 8 0.8640 -0.9745 2.6744 13 7 2.7009 0.1694 3.1635 14 6 4.1219 0.5259 2.9986 15 6 4.2314 1.9731 3.5464 16 6 3.2509 1.9236 4.7479 17 8 3.8872 1.3708 5.9019 18 6 2.7059 3.2962 5.0482 19 1 1.6491 3.4925 4.9429 20 6 3.5563 4.3013 5.4574 21 7 4.8555 4.0976 5.4733 22 14 2.8632 5.9524 5.9892 23 1 2.7040 5.9701 7.4655 24 1 3.7931 7.0350 5.5787 25 1 1.5416 6.1649 5.3462 26 6 2.1312 0.9898 4.2424 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5399 0.9353 0.0045 29 1 1.3582 2.1318 -0.0828 30 1 2.6267 1.3994 0.9284 31 1 2.7508 1.3277 -0.8458 32 1 2.5732 -3.9237 -0.3875 33 1 1.1678 -4.3555 0.6340 34 1 3.5991 -3.5135 1.6800 35 1 2.0336 -3.2444 2.5093 36 1 4.7521 -0.1498 3.5769 37 1 4.4004 0.4974 1.9452 38 1 3.9036 2.7011 2.8045 39 1 5.2470 2.1871 3.8794 40 1 4.5658 1.9413 6.2881 41 1 5.4539 4.8049 5.7608 42 1 1.3002 1.5816 3.8586 43 1 1.7884 0.3484 5.0543 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911526209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:53 Heat of formation + Delta-G solvation = -125.393900 kcal Electronic energy + Delta-G solvation = -25629.563507 eV Core-core repulsion = 22060.514007 eV Total energy + Delta-G solvation = -3569.049500 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.78726 -40.05504 -38.56382 -36.12708 -35.94210 -34.20288 -33.40704 -31.35504 -30.15588 -29.54614 -28.07776 -27.13926 -24.89730 -23.87663 -22.77744 -21.44538 -20.43221 -19.43842 -19.10153 -18.35448 -17.29231 -17.03391 -16.91510 -16.61100 -16.41139 -16.06599 -15.87568 -15.04247 -14.81954 -14.67778 -14.37664 -13.98588 -13.92823 -13.85955 -13.37494 -13.32350 -13.07062 -13.02208 -12.86655 -12.69191 -12.60672 -12.38857 -12.28872 -12.27232 -12.14037 -11.96605 -11.84933 -11.22004 -10.82110 -10.75157 -10.60596 -10.12236 -9.96289 -9.52808 -8.25265 -6.39645 1.28739 1.39979 1.44415 1.52366 1.64767 2.03830 2.39179 2.86680 2.99396 3.36734 3.56335 3.76924 3.86055 4.01068 4.01875 4.17110 4.18763 4.24515 4.30079 4.32860 4.46940 4.56269 4.60096 4.66579 4.68549 4.80464 4.82224 4.87620 4.93486 4.99915 5.07724 5.12987 5.19706 5.29828 5.49357 5.58095 5.62442 5.76209 5.77216 6.05815 6.08348 6.60794 6.68886 7.23450 7.31470 7.36970 8.79558 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.025324 B = 0.004581 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.396398 B = 6110.592776 C = 6540.144841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.151 4.151 3 C -0.116 4.116 4 C 0.133 3.867 5 H 0.117 0.883 6 O -0.386 6.386 7 C 0.046 3.954 8 C -0.136 4.136 9 C -0.132 4.132 10 H 0.129 0.871 11 C 0.533 3.467 12 O -0.578 6.578 13 N -0.609 5.609 14 C 0.101 3.899 15 C -0.119 4.119 16 C 0.236 3.764 17 O -0.593 6.593 18 C -0.565 4.565 19 H 0.047 0.953 20 C 0.042 3.958 21 N -0.901 5.901 22 Si 0.954 3.046 23 H -0.278 1.278 24 H -0.276 1.276 25 H -0.277 1.277 26 C 0.133 3.867 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.380 0.620 41 H 0.272 0.728 42 H 0.052 0.948 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 -10.078 -12.112 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.173 4.173 4 C 0.075 3.925 5 H 0.135 0.865 6 O -0.306 6.306 7 C -0.030 4.030 8 C -0.174 4.174 9 C -0.154 4.154 10 H 0.147 0.853 11 C 0.323 3.677 12 O -0.458 6.458 13 N -0.341 5.341 14 C -0.020 4.020 15 C -0.158 4.158 16 C 0.196 3.804 17 O -0.402 6.402 18 C -0.603 4.603 19 H 0.066 0.934 20 C -0.160 4.160 21 N -0.540 5.540 22 Si 0.780 3.220 23 H -0.204 1.204 24 H -0.201 1.201 25 H -0.202 1.202 26 C 0.010 3.990 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.138 0.862 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.229 0.771 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.955 -10.655 -12.207 16.321 hybrid contribution -0.185 1.648 1.136 2.010 sum 1.770 -9.007 -11.071 14.381 Atomic orbital electron populations 1.23611 0.96004 1.01281 0.99215 1.21701 0.95857 0.95082 1.02512 1.20862 1.00551 0.92965 1.02874 1.21762 0.90656 0.85532 0.94547 0.86529 1.89147 1.39268 1.17825 1.84333 1.23615 0.96306 0.88849 0.94228 1.22952 1.03417 0.91298 0.99738 1.22855 1.02047 0.97000 0.93478 0.85295 1.20511 0.86426 0.78763 0.81975 1.90656 1.17909 1.67604 1.69642 1.48699 1.12662 1.37560 1.35230 1.22617 0.80603 0.96911 1.01916 1.23056 1.01270 0.93465 0.98009 1.19555 0.88282 0.89045 0.83495 1.86108 1.57709 1.49585 1.46755 1.21707 0.94501 0.95960 1.48127 0.93425 1.25511 0.95114 1.01376 0.93971 1.69799 1.02245 1.35325 1.46605 0.85616 0.78317 0.79598 0.78496 1.20360 1.20095 1.20246 1.21686 0.96530 0.92281 0.88498 0.88891 0.88821 0.92205 0.92235 0.88989 0.88741 0.88494 0.86232 0.92483 0.91034 0.88160 0.92355 0.90272 0.77094 0.91842 0.92987 0.94569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.25 12.86 67.78 0.87 -4.38 16 2 C -0.15 -4.37 3.71 -16.49 -0.06 -4.43 16 3 C -0.12 -3.03 9.99 71.23 0.71 -2.32 16 4 C 0.13 3.26 3.50 30.35 0.11 3.37 16 5 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 6 O -0.39 -10.48 9.83 -148.98 -1.46 -11.94 16 7 C 0.05 0.88 7.63 72.49 0.55 1.43 16 8 C -0.14 -2.85 6.64 31.61 0.21 -2.65 16 9 C -0.13 -3.32 3.16 -10.52 -0.03 -3.35 16 10 H 0.13 2.47 6.20 -2.38 -0.01 2.46 16 11 C 0.53 19.22 4.63 87.66 0.41 19.63 16 12 O -0.58 -25.61 15.79 -3.05 -0.05 -25.66 16 13 N -0.61 -23.01 2.77 -811.35 -2.24 -25.26 16 14 C 0.10 3.28 5.79 86.93 0.50 3.79 16 15 C -0.12 -4.87 5.49 32.06 0.18 -4.70 16 16 C 0.24 11.27 0.86 -10.35 -0.01 11.26 16 17 O -0.59 -29.46 13.11 -148.98 -1.95 -31.42 16 18 C -0.56 -29.58 8.20 25.60 0.21 -29.37 16 19 H 0.05 2.58 7.56 -2.91 -0.02 2.56 16 20 C 0.04 2.12 5.21 84.65 0.44 2.56 16 21 N -0.90 -44.66 10.70 21.45 0.23 -44.43 16 22 Si 0.95 40.85 29.54 68.60 2.03 42.88 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 26 C 0.13 6.14 6.22 86.73 0.54 6.68 16 27 H 0.09 3.19 6.91 -2.91 -0.02 3.17 16 28 H 0.09 2.86 7.84 -2.91 -0.02 2.84 16 29 H 0.06 1.60 7.79 -2.39 -0.02 1.59 16 30 H 0.06 1.75 5.89 -2.39 -0.01 1.74 16 31 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.52 7.56 -2.39 -0.02 1.50 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.10 2.46 6.54 -2.39 -0.02 2.44 16 38 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 39 H 0.08 3.37 7.52 -2.39 -0.02 3.36 16 40 H 0.38 18.86 7.37 -74.06 -0.55 18.31 16 41 H 0.27 12.82 8.31 -92.71 -0.77 12.05 16 42 H 0.05 2.54 7.64 -2.39 -0.02 2.52 16 43 H 0.04 1.78 8.07 -2.39 -0.02 1.76 16 Total: -1.00 -63.83 339.05 1.64 -62.19 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.47 Total: 36.12 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.62 Total: -2.49 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -2.01 Total: -69.69 kcal Atomic # 8 Polarization: -65.55 SS G_CDS: -3.47 Total: -69.01 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -63.83 1.64 -62.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.202 kcal (2) G-P(sol) polarization free energy of solvation -63.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds