Wall clock time and date at job start Tue Mar 31 2020 03:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34583 * 125.74519 * 2 1 4 4 N 1.30875 * 107.62276 * 179.72988 * 3 2 1 5 5 C 1.34543 * 107.26699 * 0.37048 * 4 3 2 6 6 C 1.47876 * 126.04768 * 179.89507 * 5 4 3 7 7 O 1.21558 * 120.00162 * 179.69075 * 6 5 4 8 8 N 1.34774 * 119.99909 * 359.68212 * 6 5 4 9 9 C 1.46504 * 119.99981 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47036 * 180.02562 * 9 8 6 11 11 H 1.09002 * 110.78272 * 51.75735 * 10 9 8 12 12 C 1.54327 * 110.71739 * 288.52195 * 10 9 8 13 13 N 1.47014 * 107.27187 * 219.44553 * 12 10 9 14 14 C 1.36941 * 125.65028 * 178.98893 * 13 12 10 15 15 H 1.08001 * 119.99881 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00004 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00364 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00071 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46867 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47240 * 119.99641 * 18 16 14 21 21 H 1.48505 * 109.47038 * 240.00124 * 18 16 14 22 22 C 1.47419 * 108.70437 * 358.94082 * 13 12 10 23 23 C 1.54912 * 104.83306 * 24.12578 * 22 13 12 24 24 H 1.08995 * 111.03828 * 204.90274 * 23 22 13 25 25 O 1.42903 * 110.99758 * 81.06681 * 23 22 13 26 26 N 1.28850 * 125.74820 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46719 * 270.01569 * 1 2 3 28 28 H 1.08997 * 109.46881 * 30.01758 * 1 2 3 29 29 H 1.09004 * 109.46605 * 150.01293 * 1 2 3 30 30 H 1.07999 * 126.19081 * 359.97134 * 3 2 1 31 31 H 0.97000 * 119.99775 * 0.02562 * 8 6 5 32 32 H 1.08996 * 109.46660 * 60.00162 * 9 8 6 33 33 H 1.08998 * 109.47245 * 300.00289 * 9 8 6 34 34 H 1.08999 * 109.88583 * 338.86569 * 12 10 9 35 35 H 1.09001 * 109.88372 * 100.02571 * 12 10 9 36 36 H 0.96996 * 119.99935 * 179.97438 * 17 16 14 37 37 H 1.09009 * 110.36844 * 265.29198 * 22 13 12 38 38 H 1.09002 * 110.37005 * 142.96697 * 22 13 12 39 39 H 0.96700 * 114.00311 * 67.80834 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4951 0.6852 0.0059 5 6 3.4750 -0.6600 0.0012 6 6 4.6575 -1.5480 0.0029 7 8 4.5115 -2.7547 0.0039 8 7 5.8972 -1.0192 0.0032 9 6 7.0688 -1.8989 0.0043 10 6 8.3427 -1.0516 0.0051 11 1 8.3148 -0.3119 0.8053 12 6 8.5444 -0.3678 -1.3636 13 7 9.9815 -0.4184 -1.6693 14 6 10.5733 0.0650 -2.8057 15 1 9.9714 0.5317 -3.5714 16 6 11.9469 -0.0449 -2.9735 17 7 12.6806 -0.6132 -2.0402 18 14 12.7541 0.6139 -4.5240 19 1 11.7176 1.2021 -5.4101 20 1 13.7448 1.6587 -4.1607 21 1 13.4415 -0.4948 -5.2336 22 6 10.6803 -1.0748 -0.5494 23 6 9.6003 -1.9512 0.1327 24 1 9.8467 -2.1322 1.1789 25 8 9.4222 -3.1832 -0.5692 26 7 2.2178 -1.0457 0.0005 27 1 -0.3633 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5137 30 1 1.9164 2.1191 -0.0004 31 1 6.0138 -0.0562 0.0027 32 1 7.0512 -2.5284 -0.8853 33 1 7.0504 -2.5274 0.8946 34 1 7.9832 -0.9011 -2.1308 35 1 8.2126 0.6692 -1.3124 36 1 13.6403 -0.6903 -2.1577 37 1 11.0609 -0.3296 0.1493 38 1 11.4939 -1.6970 -0.9222 39 1 10.1824 -3.7786 -0.5180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958020185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:36 Heat of formation + Delta-G solvation = 44.903602 kcal Electronic energy + Delta-G solvation = -23444.031925 eV Core-core repulsion = 19811.119487 eV Total energy + Delta-G solvation = -3632.912438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.64184 -39.44131 -38.11959 -34.93930 -34.75394 -34.44983 -32.12451 -31.96447 -29.83757 -28.28434 -27.51926 -25.57286 -24.29349 -23.13358 -22.22496 -20.71708 -20.09785 -19.59985 -18.19791 -17.24926 -17.02575 -16.71180 -16.16426 -15.96092 -15.04993 -14.88382 -14.79336 -14.19024 -13.92786 -13.72648 -13.62507 -13.57117 -13.01216 -12.64056 -12.28151 -12.17084 -11.89088 -11.32966 -11.20224 -10.78486 -10.69836 -10.66232 -10.59086 -10.34672 -10.27971 -10.00162 -9.83328 -9.78660 -9.77848 -9.05310 -8.85085 -8.63982 -6.78940 -5.64733 -3.04201 1.23832 1.92305 1.92858 3.09320 3.39271 3.41687 3.47355 3.49775 3.93642 4.08701 4.49736 4.52755 4.54027 4.76588 4.81682 4.87395 5.21017 5.38775 5.46105 5.56522 5.67094 5.75106 5.97166 6.06129 6.11443 6.16972 6.21523 6.40263 6.48700 6.56433 6.72731 6.93057 7.33570 7.50403 7.63036 7.79931 7.85951 8.26092 8.29132 8.42643 9.23434 9.84795 10.49048 11.40379 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.003152 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.910650 B = 8880.476893 C = 9668.290838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.308 5.308 3 C 0.190 3.810 4 N -0.483 5.483 5 C 0.147 3.853 6 C 0.611 3.389 7 O -0.522 6.522 8 N -0.704 5.704 9 C 0.142 3.858 10 C -0.106 4.106 11 H 0.088 0.912 12 C 0.144 3.856 13 N -0.598 5.598 14 C -0.215 4.215 15 H 0.078 0.922 16 C -0.014 4.014 17 N -0.926 5.926 18 Si 0.915 3.085 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.126 3.874 23 C 0.082 3.918 24 H 0.055 0.945 25 O -0.557 6.557 26 N -0.255 5.255 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.227 0.773 31 H 0.410 0.590 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.021 0.979 36 H 0.251 0.749 37 H 0.019 0.981 38 H 0.112 0.888 39 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.674 3.248 7.634 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.104 5.104 3 C -0.106 4.106 4 N -0.208 5.208 5 C -0.133 4.133 6 C 0.392 3.608 7 O -0.395 6.395 8 N -0.356 5.356 9 C 0.019 3.981 10 C -0.125 4.125 11 H 0.106 0.894 12 C 0.018 3.982 13 N -0.324 5.324 14 C -0.343 4.343 15 H 0.096 0.904 16 C -0.209 4.209 17 N -0.576 5.576 18 Si 0.746 3.254 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.001 3.999 23 C 0.022 3.978 24 H 0.073 0.927 25 O -0.363 6.363 26 N -0.094 5.094 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.243 0.757 31 H 0.245 0.755 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.039 0.961 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.129 0.871 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -22.042 2.181 7.391 23.350 hybrid contribution 0.686 1.088 -0.607 1.422 sum -21.356 3.268 6.784 22.645 Atomic orbital electron populations 1.22240 0.72285 1.05989 1.04946 1.47404 1.09320 1.03917 1.49727 1.26510 0.85869 0.95975 1.02222 1.71299 1.20392 1.09446 1.19661 1.23862 0.92245 0.89478 1.07679 1.16264 0.81110 0.85792 0.77601 1.90832 1.85629 1.13491 1.49545 1.45834 1.04737 1.11592 1.73420 1.21335 0.81548 0.91991 1.03216 1.22511 0.93059 0.97155 0.99794 0.89406 1.21337 0.87834 0.96435 0.92616 1.44357 1.00405 1.68859 1.18766 1.19147 0.90509 1.30268 0.94399 0.90422 1.24759 0.96062 1.01544 0.98522 1.69759 1.04961 1.49632 1.33235 0.85981 0.79197 0.77997 0.82243 1.20544 1.21840 1.21777 1.22587 0.94050 0.94623 0.88629 1.23211 0.95780 0.85006 0.93842 0.92720 1.86398 1.43758 1.29074 1.77032 1.74354 1.02916 1.13203 1.18921 0.89156 0.87973 0.88183 0.75707 0.75471 0.89870 0.91344 0.95322 0.96071 0.93853 0.96311 0.87067 0.77837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.25 11.38 59.85 0.68 0.93 16 2 N -0.31 -2.70 3.72 -69.39 -0.26 -2.96 16 3 C 0.19 1.56 12.62 -90.48 -1.14 0.42 16 4 N -0.48 -6.10 11.09 -12.36 -0.14 -6.23 16 5 C 0.15 2.22 7.96 -156.36 -1.24 0.97 16 6 C 0.61 10.42 7.83 -12.32 -0.10 10.33 16 7 O -0.52 -10.51 17.09 5.31 0.09 -10.42 16 8 N -0.70 -10.95 5.47 -61.24 -0.33 -11.29 16 9 C 0.14 2.38 4.50 -4.04 -0.02 2.36 16 10 C -0.11 -1.87 2.89 -88.79 -0.26 -2.13 16 11 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 12 C 0.14 3.08 6.75 -3.07 -0.02 3.06 16 13 N -0.60 -15.47 3.39 -170.07 -0.58 -16.05 16 14 C -0.21 -6.08 10.27 -15.06 -0.15 -6.23 16 15 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 16 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 17 N -0.93 -26.88 10.09 55.49 0.56 -26.32 16 18 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 C 0.13 3.01 5.62 -2.53 -0.01 2.99 16 23 C 0.08 1.55 4.17 -24.59 -0.10 1.44 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 O -0.56 -10.52 12.33 -35.23 -0.43 -10.96 16 26 N -0.25 -3.52 12.08 32.07 0.39 -3.13 16 27 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.23 0.62 8.06 -52.49 -0.42 0.19 16 31 H 0.41 5.81 8.18 -40.82 -0.33 5.48 16 32 H 0.08 1.60 7.52 -51.93 -0.39 1.21 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.03 0.65 7.68 -51.93 -0.40 0.25 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.11 2.95 5.88 -51.93 -0.31 2.65 16 39 H 0.37 5.78 9.12 45.56 0.42 6.20 16 LS Contribution 333.32 15.07 5.02 5.02 Total: -1.00 -37.80 333.32 -7.53 -45.34 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.36 Total: 6.03 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: -2.46 Total: 13.66 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: -0.36 Total: -65.98 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.34 Total: -21.38 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -37.80 -7.53 -45.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958020185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.239 kcal (2) G-P(sol) polarization free energy of solvation -37.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds