Wall clock time and date at job start Tue Mar 31 2020 03:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34583 * 125.74519 * 2 1 4 4 N 1.30875 * 107.62276 * 179.72988 * 3 2 1 5 5 C 1.34543 * 107.26699 * 0.37048 * 4 3 2 6 6 C 1.47876 * 126.04768 * 179.89507 * 5 4 3 7 7 O 1.21558 * 120.00162 * 179.69075 * 6 5 4 8 8 N 1.34774 * 119.99909 * 359.68212 * 6 5 4 9 9 C 1.46504 * 119.99981 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47036 * 180.02562 * 9 8 6 11 11 H 1.09002 * 110.78272 * 51.75735 * 10 9 8 12 12 C 1.54327 * 110.71739 * 288.52195 * 10 9 8 13 13 N 1.47014 * 107.27187 * 219.44553 * 12 10 9 14 14 C 1.36941 * 125.65028 * 178.98893 * 13 12 10 15 15 H 1.08001 * 119.99881 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00004 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00364 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00071 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46867 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47240 * 119.99641 * 18 16 14 21 21 H 1.48505 * 109.47038 * 240.00124 * 18 16 14 22 22 C 1.47419 * 108.70437 * 358.94082 * 13 12 10 23 23 C 1.54912 * 104.83306 * 24.12578 * 22 13 12 24 24 H 1.08995 * 111.03828 * 204.90274 * 23 22 13 25 25 O 1.42903 * 110.99758 * 81.06681 * 23 22 13 26 26 N 1.28850 * 125.74820 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46719 * 270.01569 * 1 2 3 28 28 H 1.08997 * 109.46881 * 30.01758 * 1 2 3 29 29 H 1.09004 * 109.46605 * 150.01293 * 1 2 3 30 30 H 1.07999 * 126.19081 * 359.97134 * 3 2 1 31 31 H 0.97000 * 119.99775 * 0.02562 * 8 6 5 32 32 H 1.08996 * 109.46660 * 60.00162 * 9 8 6 33 33 H 1.08998 * 109.47245 * 300.00289 * 9 8 6 34 34 H 1.08999 * 109.88583 * 338.86569 * 12 10 9 35 35 H 1.09001 * 109.88372 * 100.02571 * 12 10 9 36 36 H 0.96996 * 119.99935 * 179.97438 * 17 16 14 37 37 H 1.09009 * 110.36844 * 265.29198 * 22 13 12 38 38 H 1.09002 * 110.37005 * 142.96697 * 22 13 12 39 39 H 0.96700 * 114.00311 * 67.80834 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4951 0.6852 0.0059 5 6 3.4750 -0.6600 0.0012 6 6 4.6575 -1.5480 0.0029 7 8 4.5115 -2.7547 0.0039 8 7 5.8972 -1.0192 0.0032 9 6 7.0688 -1.8989 0.0043 10 6 8.3427 -1.0516 0.0051 11 1 8.3148 -0.3119 0.8053 12 6 8.5444 -0.3678 -1.3636 13 7 9.9815 -0.4184 -1.6693 14 6 10.5733 0.0650 -2.8057 15 1 9.9714 0.5317 -3.5714 16 6 11.9469 -0.0449 -2.9735 17 7 12.6806 -0.6132 -2.0402 18 14 12.7541 0.6139 -4.5240 19 1 11.7176 1.2021 -5.4101 20 1 13.7448 1.6587 -4.1607 21 1 13.4415 -0.4948 -5.2336 22 6 10.6803 -1.0748 -0.5494 23 6 9.6003 -1.9512 0.1327 24 1 9.8467 -2.1322 1.1789 25 8 9.4222 -3.1832 -0.5692 26 7 2.2178 -1.0457 0.0005 27 1 -0.3633 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5137 30 1 1.9164 2.1191 -0.0004 31 1 6.0138 -0.0562 0.0027 32 1 7.0512 -2.5284 -0.8853 33 1 7.0504 -2.5274 0.8946 34 1 7.9832 -0.9011 -2.1308 35 1 8.2126 0.6692 -1.3124 36 1 13.6403 -0.6903 -2.1577 37 1 11.0609 -0.3296 0.1493 38 1 11.4939 -1.6970 -0.9222 39 1 10.1824 -3.7786 -0.5180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958020185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:35 Heat of formation + Delta-G solvation = 14.177194 kcal Electronic energy + Delta-G solvation = -23445.364322 eV Core-core repulsion = 19811.119487 eV Total energy + Delta-G solvation = -3634.244835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.44054 -40.80524 -39.70917 -36.32405 -36.18100 -35.50973 -33.95308 -32.78950 -31.52219 -29.61516 -28.66691 -27.21528 -25.70681 -24.36211 -23.05848 -22.24706 -21.57806 -21.05109 -19.28972 -19.03441 -18.06969 -17.77378 -17.33884 -17.13218 -16.81039 -16.33582 -15.80219 -15.78243 -15.58284 -15.06069 -14.64794 -14.44287 -14.03573 -13.95706 -13.85745 -13.64507 -13.16674 -13.03682 -12.85533 -12.65782 -12.30670 -12.03561 -11.86955 -11.81651 -11.73671 -11.55977 -11.44898 -11.31209 -10.80044 -10.64530 -10.62257 -10.15379 -8.84119 -7.77589 -5.19726 0.28120 1.12069 1.29779 1.46811 1.47741 1.57941 2.04860 2.23327 2.49887 3.08938 3.29335 3.36720 3.49901 3.61672 3.88526 3.91540 3.97146 4.02438 4.35710 4.42126 4.44859 4.60945 4.64781 4.70369 4.80877 4.85549 4.92290 5.01618 5.24100 5.32646 5.35258 5.41736 5.52687 5.66118 5.79043 6.29844 6.32414 6.90851 7.00076 7.08842 7.13000 7.79172 8.42190 9.24849 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.003152 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.910650 B = 8880.476893 C = 9668.290838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.300 5.300 3 C 0.207 3.793 4 N -0.510 5.510 5 C 0.117 3.883 6 C 0.609 3.391 7 O -0.564 6.564 8 N -0.694 5.694 9 C 0.156 3.844 10 C -0.090 4.090 11 H 0.116 0.884 12 C 0.142 3.858 13 N -0.621 5.621 14 C -0.235 4.235 15 H 0.075 0.925 16 C -0.066 4.066 17 N -0.948 5.948 18 Si 0.979 3.021 19 H -0.270 1.270 20 H -0.290 1.290 21 H -0.292 1.292 22 C 0.127 3.873 23 C 0.094 3.906 24 H 0.093 0.907 25 O -0.570 6.570 26 N -0.284 5.284 27 H 0.109 0.891 28 H 0.144 0.856 29 H 0.095 0.905 30 H 0.282 0.718 31 H 0.418 0.582 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.012 0.988 35 H 0.030 0.970 36 H 0.247 0.753 37 H 0.003 0.997 38 H 0.081 0.919 39 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.770 4.931 8.208 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.095 5.095 3 C -0.087 4.087 4 N -0.237 5.237 5 C -0.162 4.162 6 C 0.392 3.608 7 O -0.440 6.440 8 N -0.346 5.346 9 C 0.033 3.967 10 C -0.110 4.110 11 H 0.134 0.866 12 C 0.017 3.983 13 N -0.346 5.346 14 C -0.364 4.364 15 H 0.093 0.907 16 C -0.258 4.258 17 N -0.598 5.598 18 Si 0.807 3.193 19 H -0.195 1.195 20 H -0.217 1.217 21 H -0.219 1.219 22 C 0.002 3.998 23 C 0.034 3.966 24 H 0.111 0.889 25 O -0.377 6.377 26 N -0.125 5.125 27 H 0.127 0.873 28 H 0.162 0.838 29 H 0.114 0.886 30 H 0.297 0.703 31 H 0.255 0.745 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.030 0.970 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.021 0.979 38 H 0.099 0.901 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -24.174 3.886 7.975 25.750 hybrid contribution 1.189 0.628 -0.799 1.564 sum -22.985 4.514 7.176 24.498 Atomic orbital electron populations 1.22781 0.68966 1.07903 1.06786 1.47843 1.10964 1.02949 1.47774 1.27528 0.84451 0.97654 0.99083 1.71230 1.23124 1.08204 1.21104 1.23396 0.91892 0.90307 1.10571 1.16588 0.81970 0.85652 0.76562 1.90790 1.86364 1.15308 1.51577 1.45692 1.04206 1.11776 1.72911 1.21053 0.81610 0.91703 1.02354 1.22450 0.92947 0.97216 0.98344 0.86617 1.21438 0.85470 0.97111 0.94318 1.44660 1.02310 1.68982 1.18684 1.19452 0.91076 1.30459 0.95458 0.90685 1.25561 0.96598 1.02191 1.01469 1.69994 1.04779 1.50374 1.34633 0.85000 0.78151 0.77176 0.78942 1.19490 1.21662 1.21880 1.22460 0.94912 0.94368 0.88080 1.23113 0.94283 0.84241 0.94985 0.88948 1.86384 1.44730 1.29178 1.77406 1.74254 1.03049 1.15733 1.19511 0.87302 0.83787 0.88619 0.70250 0.74531 0.92596 0.90363 0.96983 0.95161 0.94290 0.97912 0.90139 0.76226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 11.38 127.77 1.45 1.63 16 2 N -0.30 -4.50 3.72 -373.44 -1.39 -5.88 16 3 C 0.21 2.73 12.62 180.30 2.27 5.00 16 4 N -0.51 -12.06 11.09 -193.03 -2.14 -14.20 16 5 C 0.12 3.49 7.96 137.13 1.09 4.58 16 6 C 0.61 21.09 7.83 86.80 0.68 21.77 16 7 O -0.56 -23.42 17.09 -3.90 -0.07 -23.48 16 8 N -0.69 -21.43 5.47 -465.93 -2.55 -23.98 16 9 C 0.16 5.17 4.50 86.38 0.39 5.55 16 10 C -0.09 -3.09 2.89 -9.61 -0.03 -3.11 16 11 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 12 C 0.14 6.07 6.75 86.73 0.59 6.66 16 13 N -0.62 -32.52 3.39 -691.99 -2.35 -34.87 16 14 C -0.24 -13.53 10.27 84.03 0.86 -12.66 16 15 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 16 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 17 N -0.95 -56.06 10.09 21.65 0.22 -55.84 16 18 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 C 0.13 6.11 5.62 86.86 0.49 6.59 16 23 C 0.09 3.44 4.17 31.98 0.13 3.57 16 24 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 25 O -0.57 -21.23 12.33 -148.98 -1.84 -23.07 16 26 N -0.28 -7.64 12.08 -52.44 -0.63 -8.27 16 27 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.14 -0.83 8.14 -2.39 -0.02 -0.85 16 29 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.28 -0.01 8.06 -2.91 -0.02 -0.04 16 31 H 0.42 11.53 8.18 -92.71 -0.76 10.77 16 32 H 0.06 2.19 7.52 -2.39 -0.02 2.17 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.01 0.56 7.68 -2.39 -0.02 0.54 16 35 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 37 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 38 H 0.08 4.39 5.88 -2.39 -0.01 4.37 16 39 H 0.39 11.82 9.12 -74.06 -0.68 11.15 16 Total: -1.00 -85.90 333.32 -0.66 -86.56 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -0.34 Total: 18.38 kcal Atomic # 6 Polarization: 27.89 SS G_CDS: 8.40 Total: 36.28 kcal Atomic # 7 Polarization: -134.21 SS G_CDS: -8.84 Total: -143.05 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -1.90 Total: -46.55 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -85.90 -0.66 -86.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958020185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.735 kcal (2) G-P(sol) polarization free energy of solvation -85.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds