Wall clock time and date at job start Tue Mar 31 2020 03:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28725 * 126.03645 * 2 1 4 4 N 1.28511 * 110.63888 * 180.29330 * 3 2 1 5 5 C 1.33317 * 109.43821 * 359.71301 * 4 3 2 6 6 C 1.37000 * 106.37748 * 359.97438 * 5 4 3 7 7 C 1.47230 * 127.19185 * 180.02562 * 6 5 4 8 8 O 1.21624 * 119.99934 * 184.82487 * 7 6 5 9 9 N 1.34776 * 119.99984 * 4.82143 * 7 6 5 10 10 C 1.46496 * 119.99919 * 174.49280 * 9 7 6 11 11 C 1.53001 * 109.47070 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.64013 * 51.86718 * 11 10 9 13 13 C 1.54315 * 110.72390 * 288.52297 * 11 10 9 14 14 N 1.47022 * 107.27303 * 219.44062 * 13 11 10 15 15 C 1.36941 * 125.64533 * 178.95795 * 14 13 11 16 16 H 1.07994 * 120.00282 * 0.02562 * 15 14 13 17 17 C 1.38818 * 119.99729 * 180.02562 * 15 14 13 18 18 N 1.31620 * 119.99932 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99773 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47228 * 90.00465 * 19 17 15 21 21 H 1.48504 * 109.46629 * 210.00046 * 19 17 15 22 22 H 1.48501 * 109.47211 * 329.99769 * 19 17 15 23 23 C 1.47414 * 108.70397 * 358.94343 * 14 13 11 24 24 C 1.54914 * 104.83497 * 24.12816 * 23 14 13 25 25 H 1.08996 * 111.03740 * 81.07370 * 24 23 14 26 26 O 1.42900 * 111.00603 * 204.92084 * 24 23 14 27 27 H 1.08995 * 109.47506 * 271.34515 * 1 2 3 28 28 H 1.09000 * 109.47313 * 31.34906 * 1 2 3 29 29 H 1.09008 * 109.46716 * 151.34671 * 1 2 3 30 30 H 1.08008 * 126.81133 * 180.02562 * 5 4 3 31 31 H 0.96999 * 120.00106 * 354.49447 * 9 7 6 32 32 H 1.09000 * 109.47402 * 60.00255 * 10 9 7 33 33 H 1.08998 * 109.47767 * 300.00632 * 10 9 7 34 34 H 1.09001 * 109.88121 * 338.86270 * 13 11 10 35 35 H 1.09003 * 109.87953 * 100.02837 * 13 11 10 36 36 H 0.97000 * 119.99963 * 179.97438 * 18 17 15 37 37 H 1.09001 * 110.37053 * 265.28995 * 23 14 13 38 38 H 1.09001 * 110.36961 * 142.96506 * 23 14 13 39 39 H 0.96707 * 113.99792 * 292.19176 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4612 0.6997 -0.0062 5 6 3.5552 -0.6301 -0.0043 6 6 2.2713 -1.1081 0.0042 7 6 1.8464 -2.5178 0.0099 8 8 0.6655 -2.7973 -0.0713 9 7 2.7661 -3.4984 0.1049 10 6 2.3385 -4.8938 0.2321 11 6 3.5693 -5.7983 0.3209 12 1 4.2492 -5.4469 1.0970 13 6 4.2867 -5.8797 -1.0430 14 7 4.7303 -7.2700 -1.2206 15 6 5.3908 -7.7635 -2.3140 16 1 5.6278 -7.1113 -3.1415 17 6 5.7557 -9.1021 -2.3587 18 7 5.4663 -9.8971 -1.3504 19 14 6.6573 -9.7751 -3.8499 20 1 8.1218 -9.6395 -3.6457 21 1 6.3134 -11.2083 -4.0309 22 1 6.2532 -9.0126 -5.0584 23 6 4.3467 -8.0448 -0.0266 24 6 3.1516 -7.2696 0.5822 25 1 2.2239 -7.5104 0.0632 26 8 3.0337 -7.5275 1.9828 27 1 -0.3634 0.0241 1.0273 28 1 -0.3634 0.8776 -0.5346 29 1 -0.3633 -0.9019 -0.4928 30 1 4.4633 -1.2148 -0.0078 31 1 3.7111 -3.2802 0.0891 32 1 1.7451 -5.1728 -0.6386 33 1 1.7368 -5.0088 1.1337 34 1 3.5971 -5.6056 -1.8414 35 1 5.1483 -5.2120 -1.0490 36 1 5.7209 -10.8326 -1.3818 37 1 5.1739 -8.0841 0.6821 38 1 4.0407 -9.0519 -0.3100 39 1 2.7745 -8.4347 2.1952 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958029724.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:43 Heat of formation + Delta-G solvation = 45.766944 kcal Electronic energy + Delta-G solvation = -23565.786205 eV Core-core repulsion = 19932.911204 eV Total energy + Delta-G solvation = -3632.875001 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -43.54431 -39.79504 -38.27785 -35.49629 -35.03595 -34.57123 -32.59485 -31.64017 -29.71423 -28.34421 -27.63422 -25.82426 -24.38920 -23.32671 -22.29084 -21.00020 -20.33910 -19.87991 -18.32131 -17.15531 -17.08689 -16.95240 -16.71062 -15.92899 -15.45676 -15.00822 -14.72894 -14.28104 -14.16615 -13.80916 -13.62509 -13.29260 -13.11896 -12.96731 -12.49615 -12.32940 -12.04951 -11.67303 -11.40647 -11.31810 -11.06756 -10.87321 -10.72053 -10.51270 -10.39724 -10.12501 -9.95971 -9.80060 -9.75912 -9.26347 -9.20239 -8.76608 -6.97788 -5.77343 -3.20156 0.66703 1.81623 2.04755 2.84380 2.90619 3.33938 3.39264 3.40921 4.04016 4.21572 4.36411 4.46492 4.61795 4.71784 4.72940 4.90455 5.08097 5.09384 5.31745 5.36774 5.40591 5.57345 5.65877 5.81753 5.88185 5.94657 6.07231 6.07835 6.16193 6.32000 6.48571 6.70923 7.17937 7.28345 7.48550 7.68008 7.80952 8.07362 8.07724 8.22175 9.08740 9.69593 10.31881 11.26645 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.003268 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.157994 B = 8564.911833 C = 9295.724734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.256 5.256 3 N -0.062 5.062 4 N -0.273 5.273 5 C 0.003 3.997 6 C -0.068 4.068 7 C 0.594 3.406 8 O -0.539 6.539 9 N -0.703 5.703 10 C 0.134 3.866 11 C -0.106 4.106 12 H 0.089 0.911 13 C 0.140 3.860 14 N -0.601 5.601 15 C -0.226 4.226 16 H 0.080 0.920 17 C -0.010 4.010 18 N -0.923 5.923 19 Si 0.917 3.083 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.128 3.872 24 C 0.082 3.918 25 H 0.061 0.939 26 O -0.570 6.570 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.119 0.881 30 H 0.200 0.800 31 H 0.406 0.594 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.030 0.970 35 H 0.026 0.974 36 H 0.253 0.747 37 H 0.023 0.977 38 H 0.110 0.890 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.860 13.515 4.967 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.052 5.052 3 N -0.043 5.043 4 N -0.136 5.136 5 C -0.158 4.158 6 C -0.203 4.203 7 C 0.378 3.622 8 O -0.416 6.416 9 N -0.354 5.354 10 C 0.012 3.988 11 C -0.125 4.125 12 H 0.107 0.893 13 C 0.014 3.986 14 N -0.328 5.328 15 C -0.354 4.354 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.571 5.571 19 Si 0.747 3.253 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.002 3.998 24 C 0.021 3.979 25 H 0.079 0.921 26 O -0.374 6.374 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.137 0.863 30 H 0.217 0.783 31 H 0.241 0.759 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.127 0.873 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.459 15.269 4.873 18.610 hybrid contribution 0.745 -1.947 -0.760 2.219 sum -8.714 13.321 4.114 16.441 Atomic orbital electron populations 1.22596 0.71373 1.06998 1.05668 1.47647 1.09912 1.03431 1.44242 1.78280 0.96761 1.11558 1.17740 1.74906 1.09092 1.12569 1.17000 1.23960 0.96791 0.91979 1.03039 1.21999 0.91554 0.90964 1.15745 1.16647 0.85854 0.82526 0.77160 1.90792 1.16713 1.83617 1.50504 1.45728 1.09672 1.06933 1.73072 1.21569 0.97038 0.77641 1.02585 1.22431 0.96121 0.94597 0.99397 0.89308 1.21393 0.95736 0.88960 0.92505 1.44308 1.67408 1.03276 1.17813 1.19090 1.28750 0.93155 0.94415 0.90229 1.24807 1.01232 0.96227 0.98255 1.69754 1.51677 1.05182 1.30482 0.86037 0.79396 0.78183 0.81667 1.21513 1.21588 1.20602 1.22553 0.91991 0.97733 0.87478 1.23305 0.99459 0.94149 0.80961 0.92060 1.86363 1.92640 1.34605 1.23837 0.88683 0.87953 0.86281 0.78293 0.75885 0.90605 0.90677 0.95254 0.95599 0.93582 0.95930 0.87264 0.77513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 11.00 59.84 0.66 1.20 16 2 N -0.26 -2.82 3.79 -64.12 -0.24 -3.06 16 3 N -0.06 -0.79 13.14 60.35 0.79 0.00 16 4 N -0.27 -3.54 12.35 30.47 0.38 -3.16 16 5 C 0.00 0.03 11.54 -17.36 -0.20 -0.17 16 6 C -0.07 -0.77 6.98 -82.33 -0.57 -1.35 16 7 C 0.59 7.28 7.80 -12.61 -0.10 7.18 16 8 O -0.54 -7.81 14.82 5.26 0.08 -7.73 16 9 N -0.70 -7.96 5.46 -61.45 -0.34 -8.29 16 10 C 0.13 1.79 5.02 -4.04 -0.02 1.77 16 11 C -0.11 -1.66 2.70 -88.78 -0.24 -1.90 16 12 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 13 C 0.14 2.61 6.75 -3.07 -0.02 2.59 16 14 N -0.60 -14.42 3.39 -170.08 -0.58 -15.00 16 15 C -0.23 -6.01 10.27 -15.06 -0.15 -6.16 16 16 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -25.72 10.09 55.49 0.56 -25.16 16 19 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.13 2.90 5.62 -2.53 -0.01 2.88 16 24 C 0.08 1.43 3.88 -24.58 -0.10 1.34 16 25 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 26 O -0.57 -9.09 13.47 -35.23 -0.47 -9.56 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.12 0.96 6.31 -51.92 -0.33 0.64 16 30 H 0.20 1.40 7.56 -52.48 -0.40 1.00 16 31 H 0.41 3.73 7.50 -40.82 -0.31 3.43 16 32 H 0.08 1.08 7.93 -51.93 -0.41 0.67 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.03 0.55 7.68 -51.93 -0.40 0.15 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.11 2.78 5.87 -51.93 -0.30 2.47 16 39 H 0.38 4.65 9.12 45.56 0.42 5.06 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -33.21 329.46 -4.97 -38.18 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.23 Total: 5.50 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -0.86 Total: 7.04 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.57 Total: -54.67 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.40 Total: -17.30 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.21 -4.97 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958029724.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.949 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds