Wall clock time and date at job start Tue Mar 31 2020 03:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28725 * 126.03645 * 2 1 4 4 N 1.28511 * 110.63888 * 180.29330 * 3 2 1 5 5 C 1.33317 * 109.43821 * 359.71301 * 4 3 2 6 6 C 1.37000 * 106.37748 * 359.97438 * 5 4 3 7 7 C 1.47230 * 127.19185 * 180.02562 * 6 5 4 8 8 O 1.21624 * 119.99934 * 184.82487 * 7 6 5 9 9 N 1.34776 * 119.99984 * 4.82143 * 7 6 5 10 10 C 1.46496 * 119.99919 * 174.49280 * 9 7 6 11 11 C 1.53001 * 109.47070 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.64013 * 51.86718 * 11 10 9 13 13 C 1.54315 * 110.72390 * 288.52297 * 11 10 9 14 14 N 1.47022 * 107.27303 * 219.44062 * 13 11 10 15 15 C 1.36941 * 125.64533 * 178.95795 * 14 13 11 16 16 H 1.07994 * 120.00282 * 0.02562 * 15 14 13 17 17 C 1.38818 * 119.99729 * 180.02562 * 15 14 13 18 18 N 1.31620 * 119.99932 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99773 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47228 * 90.00465 * 19 17 15 21 21 H 1.48504 * 109.46629 * 210.00046 * 19 17 15 22 22 H 1.48501 * 109.47211 * 329.99769 * 19 17 15 23 23 C 1.47414 * 108.70397 * 358.94343 * 14 13 11 24 24 C 1.54914 * 104.83497 * 24.12816 * 23 14 13 25 25 H 1.08996 * 111.03740 * 81.07370 * 24 23 14 26 26 O 1.42900 * 111.00603 * 204.92084 * 24 23 14 27 27 H 1.08995 * 109.47506 * 271.34515 * 1 2 3 28 28 H 1.09000 * 109.47313 * 31.34906 * 1 2 3 29 29 H 1.09008 * 109.46716 * 151.34671 * 1 2 3 30 30 H 1.08008 * 126.81133 * 180.02562 * 5 4 3 31 31 H 0.96999 * 120.00106 * 354.49447 * 9 7 6 32 32 H 1.09000 * 109.47402 * 60.00255 * 10 9 7 33 33 H 1.08998 * 109.47767 * 300.00632 * 10 9 7 34 34 H 1.09001 * 109.88121 * 338.86270 * 13 11 10 35 35 H 1.09003 * 109.87953 * 100.02837 * 13 11 10 36 36 H 0.97000 * 119.99963 * 179.97438 * 18 17 15 37 37 H 1.09001 * 110.37053 * 265.28995 * 23 14 13 38 38 H 1.09001 * 110.36961 * 142.96506 * 23 14 13 39 39 H 0.96707 * 113.99792 * 292.19176 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4612 0.6997 -0.0062 5 6 3.5552 -0.6301 -0.0043 6 6 2.2713 -1.1081 0.0042 7 6 1.8464 -2.5178 0.0099 8 8 0.6655 -2.7973 -0.0713 9 7 2.7661 -3.4984 0.1049 10 6 2.3385 -4.8938 0.2321 11 6 3.5693 -5.7983 0.3209 12 1 4.2492 -5.4469 1.0970 13 6 4.2867 -5.8797 -1.0430 14 7 4.7303 -7.2700 -1.2206 15 6 5.3908 -7.7635 -2.3140 16 1 5.6278 -7.1113 -3.1415 17 6 5.7557 -9.1021 -2.3587 18 7 5.4663 -9.8971 -1.3504 19 14 6.6573 -9.7751 -3.8499 20 1 8.1218 -9.6395 -3.6457 21 1 6.3134 -11.2083 -4.0309 22 1 6.2532 -9.0126 -5.0584 23 6 4.3467 -8.0448 -0.0266 24 6 3.1516 -7.2696 0.5822 25 1 2.2239 -7.5104 0.0632 26 8 3.0337 -7.5275 1.9828 27 1 -0.3634 0.0241 1.0273 28 1 -0.3634 0.8776 -0.5346 29 1 -0.3633 -0.9019 -0.4928 30 1 4.4633 -1.2148 -0.0078 31 1 3.7111 -3.2802 0.0891 32 1 1.7451 -5.1728 -0.6386 33 1 1.7368 -5.0088 1.1337 34 1 3.5971 -5.6056 -1.8414 35 1 5.1483 -5.2120 -1.0490 36 1 5.7209 -10.8326 -1.3818 37 1 5.1739 -8.0841 0.6821 38 1 4.0407 -9.0519 -0.3100 39 1 2.7745 -8.4347 2.1952 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958029724.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:40 Heat of formation + Delta-G solvation = 18.155421 kcal Electronic energy + Delta-G solvation = -23566.983530 eV Core-core repulsion = 19932.911204 eV Total energy + Delta-G solvation = -3634.072326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -44.39319 -40.84864 -39.69158 -36.65143 -36.38265 -35.53469 -34.13867 -32.77632 -31.19296 -29.32371 -28.97218 -27.32777 -25.73762 -24.42909 -23.24510 -22.32099 -21.68784 -21.15208 -19.31442 -18.84338 -18.24941 -17.90147 -17.76291 -17.10068 -16.84915 -16.36649 -15.71009 -15.65536 -15.39887 -15.08454 -14.71433 -14.34101 -14.25783 -14.03606 -13.88748 -13.64203 -13.25100 -13.21270 -13.08406 -12.75421 -12.37664 -12.31022 -12.23130 -11.88098 -11.84857 -11.49387 -11.29119 -11.19410 -10.80568 -10.71280 -10.68612 -10.19292 -8.89656 -7.78269 -5.22902 -0.19214 1.04555 1.17652 1.49340 1.49888 1.58592 1.93443 1.99881 2.49071 3.18103 3.28723 3.33152 3.40501 3.63148 3.70714 3.75170 3.93928 4.01419 4.15130 4.21941 4.46277 4.48563 4.53329 4.60633 4.65891 4.77876 4.90750 4.91798 4.99940 5.18835 5.29321 5.34741 5.45817 5.51274 5.76793 6.26660 6.28485 6.89585 6.91180 7.09843 7.20956 7.76617 8.38355 9.23306 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.003268 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.157994 B = 8564.911833 C = 9295.724734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.252 5.252 3 N -0.078 5.078 4 N -0.302 5.302 5 C 0.012 3.988 6 C -0.079 4.079 7 C 0.601 3.399 8 O -0.562 6.562 9 N -0.694 5.694 10 C 0.149 3.851 11 C -0.089 4.089 12 H 0.097 0.903 13 C 0.137 3.863 14 N -0.624 5.624 15 C -0.238 4.238 16 H 0.085 0.915 17 C -0.066 4.066 18 N -0.948 5.948 19 Si 0.978 3.022 20 H -0.288 1.288 21 H -0.295 1.295 22 H -0.269 1.269 23 C 0.132 3.868 24 C 0.097 3.903 25 H 0.070 0.930 26 O -0.569 6.569 27 H 0.111 0.889 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.232 0.768 31 H 0.418 0.582 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.035 0.965 35 H 0.039 0.961 36 H 0.247 0.753 37 H -0.008 1.008 38 H 0.077 0.923 39 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.287 14.795 4.960 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.050 5.050 3 N -0.059 5.059 4 N -0.164 5.164 5 C -0.149 4.149 6 C -0.214 4.214 7 C 0.385 3.615 8 O -0.442 6.442 9 N -0.346 5.346 10 C 0.025 3.975 11 C -0.108 4.108 12 H 0.115 0.885 13 C 0.012 3.988 14 N -0.351 5.351 15 C -0.367 4.367 16 H 0.102 0.898 17 C -0.258 4.258 18 N -0.598 5.598 19 Si 0.807 3.193 20 H -0.215 1.215 21 H -0.221 1.221 22 H -0.194 1.194 23 C 0.006 3.994 24 C 0.037 3.963 25 H 0.087 0.913 26 O -0.376 6.376 27 H 0.129 0.871 28 H 0.143 0.857 29 H 0.130 0.870 30 H 0.248 0.752 31 H 0.255 0.745 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.010 0.990 38 H 0.095 0.905 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -9.889 16.591 4.875 19.921 hybrid contribution 0.853 -2.333 -0.731 2.589 sum -9.036 14.258 4.144 17.382 Atomic orbital electron populations 1.22868 0.69653 1.07721 1.07006 1.47966 1.10975 1.03041 1.42974 1.78238 0.97040 1.12131 1.18471 1.74886 1.09434 1.13825 1.18214 1.24513 0.97702 0.91375 1.01289 1.21949 0.91999 0.90597 1.16847 1.16655 0.85455 0.82831 0.76548 1.90789 1.17729 1.83982 1.51655 1.45546 1.10313 1.06009 1.72726 1.21278 0.95524 0.78087 1.02566 1.22254 0.96856 0.93888 0.97779 0.88461 1.21583 0.96433 0.86443 0.94357 1.44590 1.67345 1.05743 1.17445 1.19467 1.28371 0.93471 0.95352 0.89759 1.25598 1.02644 0.96746 1.00830 1.70001 1.52813 1.04927 1.32056 0.85077 0.77990 0.77114 0.79143 1.21543 1.22133 1.19389 1.22329 0.92921 0.97277 0.86897 1.22974 0.97331 0.94493 0.81536 0.91256 1.86339 1.92548 1.36189 1.22510 0.87093 0.85742 0.86952 0.75208 0.74465 0.91236 0.90212 0.94713 0.94293 0.94312 0.99047 0.90473 0.75646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 11.00 127.77 1.41 2.27 16 2 N -0.25 -5.13 3.79 -356.78 -1.35 -6.49 16 3 N -0.08 -1.87 13.14 37.02 0.49 -1.38 16 4 N -0.30 -7.37 12.35 -57.50 -0.71 -8.08 16 5 C 0.01 0.24 11.54 84.18 0.97 1.21 16 6 C -0.08 -1.63 6.98 40.40 0.28 -1.35 16 7 C 0.60 13.35 7.80 86.61 0.68 14.03 16 8 O -0.56 -15.26 14.82 -4.11 -0.06 -15.32 16 9 N -0.69 -13.77 5.46 -466.57 -2.55 -16.31 16 10 C 0.15 3.57 5.02 86.38 0.43 4.00 16 11 C -0.09 -2.57 2.70 -9.60 -0.03 -2.59 16 12 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 13 C 0.14 4.86 6.75 86.73 0.59 5.44 16 14 N -0.62 -29.85 3.39 -692.01 -2.35 -32.20 16 15 C -0.24 -12.64 10.27 84.03 0.86 -11.77 16 16 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 17 C -0.07 -3.57 5.49 84.86 0.47 -3.10 16 18 N -0.95 -54.18 10.09 21.65 0.22 -53.96 16 19 Si 0.98 44.03 29.55 68.60 2.03 46.06 16 20 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 C 0.13 6.04 5.62 86.86 0.49 6.53 16 24 C 0.10 3.29 3.88 31.99 0.12 3.42 16 25 H 0.07 2.27 8.05 -2.39 -0.02 2.25 16 26 O -0.57 -17.13 13.47 -148.98 -2.01 -19.14 16 27 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.11 1.67 6.31 -2.38 -0.02 1.65 16 30 H 0.23 2.48 7.56 -2.91 -0.02 2.46 16 31 H 0.42 6.31 7.50 -92.71 -0.70 5.61 16 32 H 0.07 1.81 7.93 -2.39 -0.02 1.79 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.03 1.22 7.68 -2.39 -0.02 1.20 16 35 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 37 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 38 H 0.08 4.05 5.87 -2.39 -0.01 4.03 16 39 H 0.39 9.10 9.12 -74.05 -0.68 8.42 16 Total: -1.00 -71.90 329.46 -0.29 -72.19 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -0.27 Total: 16.55 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 6.27 Total: 18.07 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -6.25 Total: -118.42 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -2.07 Total: -34.45 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -71.90 -0.29 -72.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958029724.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.348 kcal (2) G-P(sol) polarization free energy of solvation -71.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds