Wall clock time and date at job start Tue Mar 31 2020 03:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.40889 * 2 1 4 4 C 1.54912 * 110.36372 * 122.28594 * 2 1 3 5 5 C 1.55162 * 101.57717 * 155.85311 * 4 2 1 6 6 H 1.09002 * 110.72059 * 82.86237 * 5 4 2 7 7 N 1.46502 * 110.72003 * 205.95874 * 5 4 2 8 8 C 1.36933 * 120.00130 * 202.56136 * 7 5 4 9 9 H 1.08000 * 120.00359 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00072 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00036 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00142 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47243 * 89.99242 * 12 10 8 14 14 H 1.48500 * 109.46843 * 209.99447 * 12 10 8 15 15 H 1.48502 * 109.46711 * 329.99164 * 12 10 8 16 16 C 1.54319 * 102.94182 * 324.49866 * 5 4 2 17 17 N 1.47018 * 107.27536 * 22.19457 * 16 5 4 18 18 C 1.34774 * 125.65380 * 181.02495 * 17 16 5 19 19 O 1.21282 * 120.00129 * 180.02562 * 18 17 16 20 20 C 1.50706 * 119.99769 * 0.04072 * 18 17 16 21 21 N 1.46496 * 109.46836 * 180.02562 * 20 18 17 22 22 C 1.36606 * 127.11488 * 264.67768 * 21 20 18 23 23 N 1.30334 * 107.27685 * 179.89577 * 22 21 20 24 24 N 1.28538 * 109.99717 * 0.38681 * 23 22 21 25 25 C 1.31032 * 109.85542 * 359.75105 * 24 23 22 26 26 O 1.35533 * 126.44433 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.47137 * 297.70904 * 1 2 3 28 28 H 1.09002 * 109.46920 * 57.71568 * 1 2 3 29 29 H 1.09000 * 109.46766 * 177.70690 * 1 2 3 30 30 H 1.08999 * 111.00244 * 37.78040 * 4 2 1 31 31 H 1.09004 * 111.03866 * 273.93552 * 4 2 1 32 32 H 0.97000 * 119.99643 * 22.55638 * 7 5 4 33 33 H 0.97002 * 120.00200 * 180.02562 * 11 10 8 34 34 H 1.09001 * 109.88349 * 141.61302 * 16 5 4 35 35 H 1.09003 * 109.88537 * 262.77719 * 16 5 4 36 36 H 1.08999 * 109.46514 * 300.00078 * 20 18 17 37 37 H 1.08992 * 109.46981 * 60.00069 * 20 18 17 38 38 H 1.07997 * 126.36456 * 0.04796 * 22 21 20 39 39 H 0.96701 * 114.00817 * 270.00384 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0691 -0.7757 1.2278 5 6 3.4778 -1.1995 0.7344 6 1 4.1945 -0.3899 0.8723 7 7 3.9269 -2.4102 1.4264 8 6 5.2633 -2.6975 1.5061 9 1 5.9865 -2.0318 1.0585 10 6 5.6888 -3.8450 2.1613 11 7 4.8075 -4.6566 2.7064 12 14 7.5120 -4.2365 2.2706 13 1 8.0769 -3.6243 3.5000 14 1 7.7000 -5.7087 2.3194 15 1 8.2084 -3.6877 1.0793 16 6 3.2495 -1.4768 -0.7664 17 7 2.0432 -0.7385 -1.1682 18 6 1.4974 -0.7365 -2.4004 19 8 0.4966 -0.0873 -2.6193 20 6 2.1303 -1.5414 -3.5062 21 7 1.3549 -1.3735 -4.7377 22 6 0.3693 -2.1933 -5.2094 23 7 -0.0582 -1.6804 -6.3288 24 7 0.5927 -0.6047 -6.5962 25 6 1.4716 -0.3702 -5.6531 26 8 2.3349 0.6732 -5.5984 27 1 -0.3633 0.4778 0.9098 28 1 -0.3633 0.5489 -0.8688 29 1 -0.3633 -1.0269 -0.0411 30 1 1.4511 -1.6479 1.4410 31 1 2.1398 -0.1266 2.1006 32 1 3.2774 -3.0083 1.8282 33 1 5.1048 -5.4582 3.1646 34 1 4.1066 -1.1280 -1.3425 35 1 3.1015 -2.5445 -0.9279 36 1 3.1507 -1.1946 -3.6695 37 1 2.1449 -2.5947 -3.2263 38 1 0.0092 -3.0972 -4.7406 39 1 3.1860 0.5024 -6.0245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988663685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:17 Heat of formation + Delta-G solvation = 11.947880 kcal Electronic energy + Delta-G solvation = -23947.724241 eV Core-core repulsion = 20313.382736 eV Total energy + Delta-G solvation = -3634.341506 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.09439 -41.32263 -38.91072 -38.66299 -36.06249 -35.81325 -33.34833 -32.98639 -30.93668 -30.14610 -29.19864 -26.65647 -25.80420 -24.01999 -23.49517 -22.82266 -21.78215 -20.44687 -19.81025 -19.20572 -18.28010 -18.04187 -17.48601 -16.97411 -16.65013 -16.38434 -16.23272 -15.49214 -15.40689 -15.28153 -14.80965 -14.45982 -14.27487 -13.77383 -13.43411 -13.40261 -13.31235 -13.08480 -12.93157 -12.80262 -12.77793 -12.38628 -12.21511 -12.06635 -11.84790 -11.69756 -11.51325 -11.34591 -10.99937 -10.63502 -10.29476 -9.70477 -9.04623 -7.92346 -5.22035 0.53563 0.99115 1.40343 1.52980 1.54583 1.61615 1.69755 1.92703 2.58952 2.72664 3.21839 3.39779 3.52143 3.69439 3.78685 3.85374 3.87818 4.03279 4.17878 4.18889 4.31910 4.48287 4.52648 4.60354 4.71555 4.77093 4.87206 4.87841 5.09975 5.16361 5.19495 5.32299 5.45972 5.55140 5.58633 6.28328 6.40387 6.45506 6.97189 7.36989 7.54444 8.08762 8.31463 9.30395 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.018800 B = 0.003690 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.029105 B = 7586.078401 C = 8383.414011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 H 0.084 0.916 4 C -0.126 4.126 5 C 0.164 3.836 6 H 0.071 0.929 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.084 0.916 10 C -0.068 4.068 11 N -0.967 5.967 12 Si 0.965 3.035 13 H -0.293 1.293 14 H -0.302 1.302 15 H -0.265 1.265 16 C 0.080 3.920 17 N -0.601 5.601 18 C 0.510 3.490 19 O -0.568 6.568 20 C 0.095 3.905 21 N -0.470 5.470 22 C 0.187 3.813 23 N -0.323 5.323 24 N -0.332 5.332 25 C 0.363 3.637 26 O -0.442 6.442 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.376 0.624 33 H 0.250 0.750 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.152 0.848 37 H 0.163 0.837 38 H 0.263 0.737 39 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 6.280 -10.123 12.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.035 3.965 3 H 0.102 0.898 4 C -0.165 4.165 5 C 0.054 3.946 6 H 0.089 0.911 7 N -0.363 5.363 8 C -0.371 4.371 9 H 0.102 0.898 10 C -0.261 4.261 11 N -0.617 5.617 12 Si 0.795 3.205 13 H -0.221 1.221 14 H -0.229 1.229 15 H -0.189 1.189 16 C -0.045 4.045 17 N -0.334 5.334 18 C 0.298 3.702 19 O -0.448 6.448 20 C -0.030 4.030 21 N -0.172 5.172 22 C -0.101 4.101 23 N -0.162 5.162 24 N -0.182 5.182 25 C 0.057 3.943 26 O -0.245 6.245 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.208 0.792 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.169 0.831 37 H 0.180 0.820 38 H 0.279 0.721 39 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -4.028 7.221 -11.289 13.994 hybrid contribution 1.828 -0.938 1.534 2.565 sum -2.200 6.283 -9.755 11.810 Atomic orbital electron populations 1.22011 0.94046 1.01917 1.02900 1.21934 0.94888 0.95690 0.83952 0.89821 1.23068 0.96100 1.00299 0.97029 1.21352 0.94461 0.89321 0.89487 0.91064 1.42517 1.04439 1.24588 1.64779 1.19639 0.84929 1.04322 1.28247 0.89812 1.25461 1.01016 0.98117 1.01472 1.69796 1.33984 1.15059 1.42888 0.85271 0.80950 0.76278 0.78012 1.22059 1.22884 1.18946 1.23121 0.85756 0.96440 0.99166 1.48591 1.28468 1.47779 1.08600 1.20652 0.84168 0.82298 0.83116 1.90737 1.26819 1.45118 1.82115 1.21969 0.96378 1.05055 0.79642 1.46587 1.31109 1.20122 1.19406 1.27177 0.89887 0.99210 0.93832 1.74109 1.22254 1.04621 1.15253 1.74478 1.08722 1.12245 1.22793 1.22154 0.96829 0.86864 0.88480 1.84915 1.29748 1.29613 1.80216 0.90366 0.92109 0.93601 0.91320 0.88923 0.79174 0.94126 0.89870 0.90980 0.83065 0.81964 0.72099 0.70981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 8.59 71.98 0.62 -3.08 16 2 C 0.14 3.30 3.77 45.47 0.17 3.47 16 3 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 4 C -0.13 -3.24 6.12 31.99 0.20 -3.05 16 5 C 0.16 4.93 3.59 46.18 0.17 5.09 16 6 H 0.07 2.13 8.11 -2.39 -0.02 2.11 16 7 N -0.72 -30.03 5.17 -317.33 -1.64 -31.67 16 8 C -0.24 -11.29 9.97 84.03 0.84 -10.45 16 9 H 0.08 3.70 7.83 -2.91 -0.02 3.68 16 10 C -0.07 -3.46 5.50 84.86 0.47 -3.00 16 11 N -0.97 -53.79 13.06 21.65 0.28 -53.51 16 12 Si 0.96 41.43 29.55 68.60 2.03 43.46 16 13 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 15 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 16 C 0.08 1.94 6.24 86.73 0.54 2.48 16 17 N -0.60 -14.04 3.24 -788.16 -2.56 -16.59 16 18 C 0.51 12.20 7.70 87.66 0.67 12.87 16 19 O -0.57 -18.35 14.15 -3.04 -0.04 -18.39 16 20 C 0.10 1.46 5.89 85.64 0.50 1.97 16 21 N -0.47 -9.60 2.29 -647.67 -1.48 -11.08 16 22 C 0.19 3.85 12.80 179.81 2.30 6.15 16 23 N -0.32 -9.27 12.18 -59.40 -0.72 -9.99 16 24 N -0.33 -10.21 12.22 -173.68 -2.12 -12.33 16 25 C 0.36 9.03 9.22 179.70 1.66 10.69 16 26 O -0.44 -8.68 13.62 -88.37 -1.20 -9.88 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.76 6.09 -2.39 -0.01 1.74 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.92 7.92 -2.39 -0.02 1.90 16 31 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.38 17.31 7.74 -92.71 -0.72 16.60 16 33 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.86 8.03 -2.39 -0.02 1.84 16 36 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.16 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.26 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.43 2.99 9.06 -74.06 -0.67 2.31 16 Total: -1.00 -74.27 334.34 0.38 -73.89 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.29 Total: 22.95 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 8.13 Total: 23.15 kcal Atomic # 7 Polarization: -126.94 SS G_CDS: -8.24 Total: -135.18 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -1.25 Total: -28.27 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -74.27 0.38 -73.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988663685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.838 kcal (2) G-P(sol) polarization free energy of solvation -74.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds