Wall clock time and date at job start Tue Mar 31 2020 04:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00022 * 2 1 4 4 H 1.48493 * 109.47351 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47282 * 300.00532 * 3 2 1 6 6 H 1.48503 * 109.47045 * 60.00172 * 3 2 1 7 7 C 1.38811 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99533 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99874 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.91574 * 328.90170 * 10 9 7 12 12 C 1.55156 * 111.00578 * 92.80424 * 10 9 7 13 13 C 1.54332 * 103.02302 * 153.38092 * 12 10 9 14 14 N 1.47016 * 107.26487 * 338.13883 * 13 12 10 15 15 C 1.34776 * 125.65018 * 178.84504 * 14 13 12 16 16 O 1.21278 * 120.00570 * 185.81819 * 15 14 13 17 17 C 1.50703 * 119.99904 * 5.82406 * 15 14 13 18 18 H 1.08999 * 109.73577 * 273.49724 * 17 15 14 19 19 C 1.52989 * 109.60802 * 153.08336 * 17 15 14 20 20 C 1.51781 * 110.87916 * 326.71227 * 19 17 15 21 21 C 1.51816 * 113.82793 * 293.02044 * 20 19 17 22 22 C 1.53052 * 110.74834 * 66.77349 * 21 20 19 23 23 C 1.51422 * 108.49367 * 275.10522 * 22 21 20 24 24 O 1.21283 * 119.89384 * 251.23065 * 23 22 21 25 25 N 1.33368 * 120.22193 * 71.25780 * 23 22 21 26 26 C 1.47425 * 108.70620 * 358.58812 * 14 13 12 27 27 H 0.96996 * 120.00109 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00288 * 0.02562 * 9 7 2 29 29 H 1.09001 * 110.72030 * 271.93861 * 12 10 9 30 30 H 1.09009 * 110.72082 * 35.03086 * 12 10 9 31 31 H 1.09000 * 109.99090 * 218.66741 * 13 12 10 32 32 H 1.08997 * 109.77886 * 97.49901 * 13 12 10 33 33 H 1.08996 * 109.19545 * 87.07434 * 19 17 15 34 34 H 1.08996 * 109.19296 * 206.35674 * 19 17 15 35 35 H 1.09002 * 108.61371 * 54.12191 * 20 19 17 36 36 H 1.09006 * 108.61003 * 171.87491 * 20 19 17 37 37 H 1.08999 * 109.20412 * 306.45429 * 21 20 19 38 38 H 1.09005 * 109.23684 * 187.11213 * 21 20 19 39 39 H 1.09000 * 109.63334 * 155.40505 * 22 21 20 40 40 H 1.08998 * 109.63813 * 34.80652 * 22 21 20 41 41 H 0.96994 * 119.79504 * 180.24434 * 25 23 22 42 42 H 1.08995 * 110.37007 * 143.19339 * 26 14 13 43 43 H 1.09005 * 110.36434 * 265.40774 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0078 -3.5578 -0.5265 12 6 2.2748 -4.1738 1.4462 13 6 2.3886 -5.7012 1.2562 14 7 1.7390 -6.0316 -0.0206 15 6 1.6460 -7.2637 -0.5589 16 8 1.1800 -7.4068 -1.6694 17 6 2.1210 -8.4637 0.2192 18 1 3.1876 -8.6128 0.0511 19 6 1.3514 -9.7063 -0.2329 20 6 -0.0707 -9.3489 -0.6249 21 6 -0.9292 -8.8847 0.5380 22 6 -0.4258 -7.5461 1.0832 23 6 0.6835 -7.8190 2.0771 24 8 0.4908 -7.6428 3.2615 25 7 1.8721 -8.2518 1.6545 26 6 1.2007 -4.7930 -0.6117 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 3.1934 -3.7659 1.8680 30 1 1.4201 -3.9270 2.0761 31 1 1.8839 -6.2169 2.0732 32 1 3.4386 -5.9917 1.2241 33 1 1.8586 -10.1499 -1.0897 34 1 1.3275 -10.4293 0.5823 35 1 -0.0369 -8.5547 -1.3707 36 1 -0.5381 -10.2249 -1.0749 37 1 -0.8929 -9.6317 1.3310 38 1 -1.9594 -8.7703 0.2006 39 1 -1.2425 -7.0228 1.5804 40 1 -0.0421 -6.9380 0.2640 41 1 2.5771 -8.4280 2.2969 42 1 1.3115 -4.8107 -1.6959 43 1 0.1525 -4.6675 -0.3402 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019367619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:51 Heat of formation + Delta-G solvation = -44.120912 kcal Electronic energy + Delta-G solvation = -25596.779625 eV Core-core repulsion = 22063.547138 eV Total energy + Delta-G solvation = -3533.232487 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 6.44 seconds Orbital eigenvalues (eV) -42.82459 -40.18256 -39.16021 -37.10424 -36.09439 -35.02694 -33.32198 -32.12369 -31.17514 -29.52749 -28.00735 -25.92421 -25.26114 -24.07239 -22.44907 -21.70355 -21.15701 -20.01689 -19.34570 -18.74870 -18.53863 -17.60615 -16.95866 -16.54749 -16.46086 -16.21086 -15.53936 -15.38966 -15.16753 -14.82045 -14.73773 -14.54640 -14.14870 -13.95974 -13.65705 -13.46220 -13.30251 -13.10537 -13.03951 -12.73598 -12.61914 -12.36645 -12.12135 -12.08450 -11.82999 -11.76872 -11.67903 -11.55986 -11.00262 -10.94293 -10.72959 -10.09683 -9.61556 -9.06325 -7.96596 -5.26873 1.31224 1.46339 1.48955 1.49065 1.59042 1.80926 2.20891 2.55898 3.23866 3.36963 3.39126 3.64461 3.70705 3.82679 3.87176 3.94095 4.09151 4.09922 4.22703 4.25126 4.29050 4.43373 4.48816 4.66237 4.67475 4.77852 4.85040 4.92485 4.93799 5.01723 5.10198 5.15825 5.17943 5.23660 5.36577 5.51898 5.61835 5.76485 5.99074 6.24175 6.43682 6.96866 7.10418 7.31015 8.02128 8.25776 9.26957 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.027314 B = 0.003928 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.854372 B = 7126.152726 C = 7294.990460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.241 4.241 8 H 0.082 0.918 9 N -0.728 5.728 10 C 0.168 3.832 11 H 0.070 0.930 12 C -0.149 4.149 13 C 0.103 3.897 14 N -0.611 5.611 15 C 0.518 3.482 16 O -0.549 6.549 17 C 0.133 3.867 18 H 0.167 0.833 19 C -0.111 4.111 20 C -0.168 4.168 21 C -0.103 4.103 22 C -0.171 4.171 23 C 0.533 3.467 24 O -0.585 6.585 25 N -0.704 5.704 26 C 0.105 3.895 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.419 0.581 42 H 0.071 0.929 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 -23.001 0.634 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.373 4.373 8 H 0.100 0.900 9 N -0.367 5.367 10 C 0.058 3.942 11 H 0.088 0.912 12 C -0.190 4.190 13 C -0.020 4.020 14 N -0.345 5.345 15 C 0.309 3.691 16 O -0.428 6.428 17 C 0.026 3.974 18 H 0.184 0.816 19 C -0.149 4.149 20 C -0.204 4.204 21 C -0.141 4.141 22 C -0.211 4.211 23 C 0.322 3.678 24 O -0.466 6.466 25 N -0.360 5.360 26 C -0.019 4.019 27 H 0.060 0.940 28 H 0.206 0.794 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.258 0.742 42 H 0.090 0.910 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.232 -22.905 0.464 23.742 hybrid contribution -0.256 1.454 0.361 1.520 sum 5.975 -21.451 0.825 22.283 Atomic orbital electron populations 1.69825 1.06737 1.26087 1.59321 1.25564 0.96297 1.01143 1.03490 0.85084 0.78416 0.79812 0.76490 1.18694 1.22241 1.22268 1.19660 0.91601 0.84759 1.41239 0.90044 1.42415 1.05434 1.00620 1.88214 1.21434 0.94537 0.84337 0.93891 0.91243 1.23257 1.02360 0.93923 0.99487 1.22453 0.98867 0.95642 0.85047 1.48666 1.56327 1.06516 1.23016 1.20872 0.78236 0.83564 0.86410 1.90570 1.46340 1.84798 1.21055 1.21740 1.05040 0.91917 0.78730 0.81573 1.21581 0.95137 0.94700 1.03493 1.21857 0.95301 1.04231 0.99054 1.21175 1.00500 0.93847 0.98578 1.22518 0.97680 1.01398 0.99542 1.20425 0.84242 0.74407 0.88762 1.90767 1.82394 1.54164 1.19276 1.45902 1.14031 1.67498 1.08562 1.22297 0.97377 0.83727 0.98462 0.94004 0.79434 0.89852 0.93070 0.90903 0.88326 0.87918 0.88925 0.88915 0.90387 0.91500 0.90414 0.89839 0.88452 0.74161 0.91021 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.75 13.06 21.65 0.28 -58.47 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.24 -12.90 9.96 84.03 0.84 -12.07 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.73 -35.48 5.24 -316.36 -1.66 -37.14 16 10 C 0.17 6.25 3.72 46.38 0.17 6.43 16 11 H 0.07 2.56 8.09 -2.38 -0.02 2.54 16 12 C -0.15 -4.77 6.64 31.79 0.21 -4.56 16 13 C 0.10 2.46 5.57 86.73 0.48 2.94 16 14 N -0.61 -15.90 2.07 -811.79 -1.68 -17.58 16 15 C 0.52 11.93 4.09 87.66 0.36 12.29 16 16 O -0.55 -15.73 13.55 -3.02 -0.04 -15.77 16 17 C 0.13 1.81 3.53 44.11 0.16 1.97 16 18 H 0.17 0.98 8.14 -2.39 -0.02 0.96 16 19 C -0.11 -1.35 5.35 30.19 0.16 -1.19 16 20 C -0.17 -2.94 5.15 29.80 0.15 -2.79 16 21 C -0.10 -2.02 5.67 30.22 0.17 -1.85 16 22 C -0.17 -4.27 5.44 30.10 0.16 -4.10 16 23 C 0.53 13.06 4.09 88.11 0.36 13.42 16 24 O -0.59 -19.14 17.66 -3.04 -0.05 -19.20 16 25 N -0.70 -11.01 3.37 -445.71 -1.50 -12.51 16 26 C 0.11 3.50 6.27 86.86 0.54 4.05 16 27 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 28 H 0.37 19.89 7.76 -92.71 -0.72 19.17 16 29 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.07 1.83 4.14 -2.39 -0.01 1.82 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 0.89 8.05 -2.39 -0.02 0.87 16 35 H 0.09 2.21 4.38 -35.69 -0.16 2.05 16 36 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.07 1.23 7.86 -2.39 -0.02 1.21 16 38 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.08 2.29 8.13 -2.39 -0.02 2.27 16 40 H 0.10 2.67 3.34 -2.39 -0.01 2.66 16 41 H 0.42 4.68 8.91 -92.71 -0.83 3.86 16 42 H 0.07 2.49 7.98 -2.39 -0.02 2.47 16 43 H 0.05 1.98 7.96 -2.38 -0.02 1.96 16 Total: -1.00 -70.77 326.55 0.97 -69.80 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -0.64 Total: 32.66 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 4.24 Total: 10.93 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -4.56 Total: -125.70 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.09 Total: -34.97 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -70.77 0.97 -69.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019367619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.680 kcal (2) G-P(sol) polarization free energy of solvation -70.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.45 seconds