Wall clock time and date at job start Tue Mar 31 2020 04:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00398 * 2 1 4 4 H 1.48492 * 109.47128 * 269.99787 * 3 2 1 5 5 H 1.48501 * 109.46837 * 30.00056 * 3 2 1 6 6 H 1.48497 * 109.46883 * 149.99676 * 3 2 1 7 7 C 1.38816 * 119.99586 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99821 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.48906 * 179.97438 * 9 7 2 11 11 C 1.53947 * 86.11463 * 155.36127 * 10 9 7 12 12 N 1.46504 * 113.74344 * 269.26153 * 11 10 9 13 13 C 1.34778 * 119.99807 * 204.99729 * 12 11 10 14 14 O 1.21276 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99977 * 179.97438 * 13 12 11 16 16 H 1.08999 * 109.46657 * 60.00158 * 15 13 12 17 17 C 1.52999 * 109.47186 * 300.01017 * 15 13 12 18 18 C 1.52997 * 109.47240 * 179.97438 * 17 15 13 19 19 C 1.52997 * 109.47460 * 59.99134 * 18 17 15 20 20 C 1.53006 * 109.47360 * 300.00560 * 19 18 17 21 21 H 1.08996 * 109.47178 * 179.97438 * 20 19 18 22 22 C 1.50698 * 109.46524 * 299.99615 * 20 19 18 23 23 N 1.34768 * 120.00536 * 299.99254 * 22 20 19 24 24 O 1.21282 * 119.99670 * 120.00194 * 22 20 19 25 25 C 1.52993 * 109.47049 * 59.99600 * 20 19 18 26 26 C 1.47573 * 134.49418 * 0.02562 * 9 7 2 27 27 H 0.97001 * 119.99179 * 0.02562 * 1 2 3 28 28 H 1.08996 * 113.77114 * 41.06470 * 10 9 7 29 29 H 1.08993 * 113.87279 * 269.67624 * 10 9 7 30 30 H 1.09004 * 113.74083 * 137.95224 * 11 10 9 31 31 H 0.96993 * 120.00029 * 25.00079 * 12 11 10 32 32 H 1.08999 * 109.46621 * 299.99163 * 17 15 13 33 33 H 1.08993 * 109.47896 * 59.99518 * 17 15 13 34 34 H 1.08993 * 109.47702 * 179.97438 * 18 17 15 35 35 H 1.09007 * 109.47266 * 299.99540 * 18 17 15 36 36 H 1.08999 * 109.47091 * 60.00305 * 19 18 17 37 37 H 1.08999 * 109.48023 * 180.02562 * 19 18 17 38 38 H 0.97005 * 120.00057 * 0.02562 * 23 22 20 39 39 H 0.96999 * 120.00574 * 179.97438 * 23 22 20 40 40 H 1.09000 * 109.47531 * 180.02562 * 25 20 19 41 41 H 1.09000 * 109.47263 * 59.99956 * 25 20 19 42 42 H 1.09003 * 113.77162 * 90.33937 * 26 9 7 43 43 H 1.09004 * 113.77283 * 318.93909 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 1.7200 -3.8102 0.0005 11 6 0.3468 -4.0829 0.6409 12 7 0.3629 -4.0548 2.1055 13 6 -0.5659 -4.7386 2.8029 14 8 -1.4147 -5.3774 2.2178 15 6 -0.5490 -4.7102 4.3095 16 1 -0.6640 -3.6828 4.6548 17 6 0.7810 -5.2723 4.8153 18 6 0.7984 -5.2429 6.3449 19 6 -0.3530 -6.0936 6.8845 20 6 -1.6832 -5.5314 6.3787 21 1 -2.5034 -6.1378 6.7628 22 6 -1.8418 -4.1108 6.8556 23 7 -1.8553 -3.8406 8.1759 24 8 -1.9574 -3.2104 6.0513 25 6 -1.7005 -5.5609 4.8491 26 6 -0.1033 -2.7573 -0.0004 27 1 -0.4849 0.8401 -0.0004 28 1 2.5622 -4.0325 0.6558 29 1 1.8325 -4.2367 -0.9961 30 1 -0.1594 -4.9597 0.2369 31 1 1.0420 -3.5442 2.5734 32 1 0.8960 -6.2997 4.4700 33 1 1.6014 -4.6660 4.4313 34 1 1.7458 -5.6437 6.7053 35 1 0.6836 -4.2153 6.6899 36 1 -0.2383 -7.1212 6.5396 37 1 -0.3410 -6.0724 7.9743 38 1 -1.7626 -4.5607 8.8193 39 1 -1.9571 -2.9262 8.4829 40 1 -2.6479 -5.1600 4.4887 41 1 -1.5857 -6.5885 4.5042 42 1 -0.5265 -2.8734 -0.9982 43 1 -0.7175 -2.1387 0.6541 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031040566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:10 Heat of formation + Delta-G solvation = -37.344942 kcal Electronic energy + Delta-G solvation = -24688.678263 eV Core-core repulsion = 21155.739604 eV Total energy + Delta-G solvation = -3532.938659 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -40.77985 -39.24990 -37.63545 -36.58510 -33.98302 -33.16235 -31.87564 -30.95158 -30.75458 -27.42174 -24.73135 -24.24100 -23.83467 -22.55294 -21.68958 -19.96614 -19.45333 -19.12264 -17.41441 -16.85848 -16.66948 -16.44584 -15.70375 -15.15482 -14.89991 -14.84501 -14.40092 -14.12893 -13.74305 -13.63060 -13.43541 -13.07161 -12.52908 -12.50158 -12.32157 -12.18496 -12.05180 -11.51015 -11.22924 -11.17712 -11.00029 -10.83074 -10.66742 -10.50864 -10.25579 -10.14674 -9.86750 -9.76370 -9.66438 -9.43742 -9.17144 -8.76792 -8.21668 -6.84152 -5.70744 -3.04574 2.52980 3.19774 3.36273 3.41755 3.45949 3.48939 3.75197 4.48676 4.49300 4.53648 4.54151 4.84151 5.08295 5.13777 5.19666 5.23657 5.24863 5.37726 5.42545 5.53821 5.66676 5.71029 5.76121 5.86402 5.91052 6.03220 6.07463 6.21502 6.31869 6.35539 6.41746 6.51278 6.60303 6.64386 6.96502 7.14579 7.30670 7.43801 7.69216 8.03202 8.15407 8.20664 8.83762 9.09004 9.75640 10.64571 11.45439 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.017772 B = 0.004082 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.134979 B = 6858.556663 C = 7562.584357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.610 5.610 10 C 0.110 3.890 11 C 0.090 3.910 12 N -0.692 5.692 13 C 0.521 3.479 14 O -0.557 6.557 15 C -0.119 4.119 16 H 0.123 0.877 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.110 4.110 20 C -0.110 4.110 21 H 0.099 0.901 22 C 0.518 3.482 23 N -0.860 5.860 24 O -0.527 6.527 25 C -0.077 4.077 26 C 0.149 3.851 27 H 0.254 0.746 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.402 0.598 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.398 0.602 39 H 0.400 0.600 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 -14.273 18.740 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.337 5.337 10 C -0.017 4.017 11 C -0.017 4.017 12 N -0.341 5.341 13 C 0.307 3.693 14 O -0.436 6.436 15 C -0.140 4.140 16 H 0.140 0.860 17 C -0.149 4.149 18 C -0.159 4.159 19 C -0.148 4.148 20 C -0.132 4.132 21 H 0.117 0.883 22 C 0.303 3.697 23 N -0.424 5.424 24 O -0.402 6.402 25 C -0.115 4.115 26 C 0.023 3.977 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.237 0.763 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.226 0.774 39 H 0.230 0.770 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.346 -13.918 17.638 22.508 hybrid contribution 0.786 1.388 0.489 1.669 sum -0.560 -12.530 18.127 22.043 Atomic orbital electron populations 1.69839 1.04999 1.25308 1.56204 1.24789 0.95598 0.97461 1.02409 0.86157 0.78587 0.83680 0.77528 1.21673 1.21672 1.20667 1.18997 0.90174 0.82055 1.44258 0.90354 1.46093 1.02317 0.99107 1.86217 1.22917 0.94632 0.86948 0.97204 1.22824 0.98703 1.00018 0.80107 1.45528 1.31904 1.50005 1.06660 1.20502 0.80830 0.78471 0.89486 1.90626 1.37342 1.43818 1.71766 1.21577 0.96106 1.04269 0.92008 0.85984 1.21529 0.96318 1.01681 0.95333 1.21569 0.98239 1.00286 0.95772 1.21564 0.93000 1.00287 0.99939 1.21439 0.99853 0.93307 0.98573 0.88262 1.20722 0.74947 0.91684 0.82303 1.43934 1.77876 1.12930 1.07615 1.90759 1.47993 1.47964 1.53492 1.21103 0.99162 1.00486 0.90740 1.22722 0.88186 0.89714 0.97069 0.93631 0.93634 0.93796 0.89383 0.76294 0.91448 0.91191 0.91267 0.91819 0.90408 0.91641 0.77362 0.76985 0.90478 0.90575 0.94890 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.11 11.38 55.49 0.63 -27.47 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.44 10.70 -15.06 -0.16 -6.60 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.61 -15.84 3.70 -178.08 -0.66 -16.50 16 10 C 0.11 2.27 8.69 -2.97 -0.03 2.24 16 11 C 0.09 1.85 4.43 -70.12 -0.31 1.54 16 12 N -0.69 -13.09 5.26 -55.32 -0.29 -13.38 16 13 C 0.52 9.56 7.15 -10.98 -0.08 9.48 16 14 O -0.56 -11.81 15.58 5.56 0.09 -11.73 16 15 C -0.12 -1.72 2.23 -91.77 -0.20 -1.92 16 16 H 0.12 2.04 5.51 -51.93 -0.29 1.75 16 17 C -0.11 -1.24 5.10 -26.73 -0.14 -1.37 16 18 C -0.12 -1.05 5.70 -26.73 -0.15 -1.20 16 19 C -0.11 -0.74 5.36 -26.73 -0.14 -0.89 16 20 C -0.11 -0.98 3.01 -91.77 -0.28 -1.25 16 21 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 22 C 0.52 5.58 5.91 -10.99 -0.06 5.52 16 23 N -0.86 -5.62 8.77 31.22 0.27 -5.34 16 24 O -0.53 -8.46 14.49 5.56 0.08 -8.38 16 25 C -0.08 -0.97 3.66 -26.74 -0.10 -1.07 16 26 C 0.15 3.76 7.32 -2.96 -0.02 3.74 16 27 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.77 7.46 -51.93 -0.39 1.38 16 31 H 0.40 7.35 8.17 -40.82 -0.33 7.01 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.80 7.56 -51.93 -0.39 0.40 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.62 7.22 -51.93 -0.37 0.25 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.29 7.56 -51.93 -0.39 -0.10 16 38 H 0.40 1.28 8.25 -40.82 -0.34 0.94 16 39 H 0.40 2.47 8.93 -40.82 -0.36 2.11 16 40 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 41 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.08 2.19 7.15 -51.93 -0.37 1.82 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -36.29 341.93 -8.10 -44.39 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.58 Total: 7.78 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -1.77 Total: 7.96 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.04 Total: -62.70 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.17 Total: -20.11 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.29 -8.10 -44.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031040566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.048 kcal (2) G-P(sol) polarization free energy of solvation -36.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds