Wall clock time and date at job start Tue Mar 31 2020 04:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00398 * 2 1 4 4 H 1.48492 * 109.47128 * 269.99787 * 3 2 1 5 5 H 1.48501 * 109.46837 * 30.00056 * 3 2 1 6 6 H 1.48497 * 109.46883 * 149.99676 * 3 2 1 7 7 C 1.38816 * 119.99586 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99821 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.48906 * 179.97438 * 9 7 2 11 11 C 1.53947 * 86.11463 * 155.36127 * 10 9 7 12 12 N 1.46504 * 113.74344 * 269.26153 * 11 10 9 13 13 C 1.34778 * 119.99807 * 204.99729 * 12 11 10 14 14 O 1.21276 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99977 * 179.97438 * 13 12 11 16 16 H 1.08999 * 109.46657 * 60.00158 * 15 13 12 17 17 C 1.52999 * 109.47186 * 300.01017 * 15 13 12 18 18 C 1.52997 * 109.47240 * 179.97438 * 17 15 13 19 19 C 1.52997 * 109.47460 * 59.99134 * 18 17 15 20 20 C 1.53006 * 109.47360 * 300.00560 * 19 18 17 21 21 H 1.08996 * 109.47178 * 179.97438 * 20 19 18 22 22 C 1.50698 * 109.46524 * 299.99615 * 20 19 18 23 23 N 1.34768 * 120.00536 * 299.99254 * 22 20 19 24 24 O 1.21282 * 119.99670 * 120.00194 * 22 20 19 25 25 C 1.52993 * 109.47049 * 59.99600 * 20 19 18 26 26 C 1.47573 * 134.49418 * 0.02562 * 9 7 2 27 27 H 0.97001 * 119.99179 * 0.02562 * 1 2 3 28 28 H 1.08996 * 113.77114 * 41.06470 * 10 9 7 29 29 H 1.08993 * 113.87279 * 269.67624 * 10 9 7 30 30 H 1.09004 * 113.74083 * 137.95224 * 11 10 9 31 31 H 0.96993 * 120.00029 * 25.00079 * 12 11 10 32 32 H 1.08999 * 109.46621 * 299.99163 * 17 15 13 33 33 H 1.08993 * 109.47896 * 59.99518 * 17 15 13 34 34 H 1.08993 * 109.47702 * 179.97438 * 18 17 15 35 35 H 1.09007 * 109.47266 * 299.99540 * 18 17 15 36 36 H 1.08999 * 109.47091 * 60.00305 * 19 18 17 37 37 H 1.08999 * 109.48023 * 180.02562 * 19 18 17 38 38 H 0.97005 * 120.00057 * 0.02562 * 23 22 20 39 39 H 0.96999 * 120.00574 * 179.97438 * 23 22 20 40 40 H 1.09000 * 109.47531 * 180.02562 * 25 20 19 41 41 H 1.09000 * 109.47263 * 59.99956 * 25 20 19 42 42 H 1.09003 * 113.77162 * 90.33937 * 26 9 7 43 43 H 1.09004 * 113.77283 * 318.93909 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 1.7200 -3.8102 0.0005 11 6 0.3468 -4.0829 0.6409 12 7 0.3629 -4.0548 2.1055 13 6 -0.5659 -4.7386 2.8029 14 8 -1.4147 -5.3774 2.2178 15 6 -0.5490 -4.7102 4.3095 16 1 -0.6640 -3.6828 4.6548 17 6 0.7810 -5.2723 4.8153 18 6 0.7984 -5.2429 6.3449 19 6 -0.3530 -6.0936 6.8845 20 6 -1.6832 -5.5314 6.3787 21 1 -2.5034 -6.1378 6.7628 22 6 -1.8418 -4.1108 6.8556 23 7 -1.8553 -3.8406 8.1759 24 8 -1.9574 -3.2104 6.0513 25 6 -1.7005 -5.5609 4.8491 26 6 -0.1033 -2.7573 -0.0004 27 1 -0.4849 0.8401 -0.0004 28 1 2.5622 -4.0325 0.6558 29 1 1.8325 -4.2367 -0.9961 30 1 -0.1594 -4.9597 0.2369 31 1 1.0420 -3.5442 2.5734 32 1 0.8960 -6.2997 4.4700 33 1 1.6014 -4.6660 4.4313 34 1 1.7458 -5.6437 6.7053 35 1 0.6836 -4.2153 6.6899 36 1 -0.2383 -7.1212 6.5396 37 1 -0.3410 -6.0724 7.9743 38 1 -1.7626 -4.5607 8.8193 39 1 -1.9571 -2.9262 8.4829 40 1 -2.6479 -5.1600 4.4887 41 1 -1.5857 -6.5885 4.5042 42 1 -0.5265 -2.8734 -0.9982 43 1 -0.7175 -2.1387 0.6541 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031040566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:10 Heat of formation + Delta-G solvation = -66.521433 kcal Electronic energy + Delta-G solvation = -24689.943451 eV Core-core repulsion = 21155.739604 eV Total energy + Delta-G solvation = -3534.203847 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.78721 -40.67950 -39.24693 -37.65472 -34.97812 -34.75898 -33.73896 -31.87023 -31.73155 -29.43554 -26.60942 -25.57786 -24.85008 -24.09340 -22.51812 -21.31755 -20.92829 -20.28393 -18.78677 -18.34848 -17.78550 -17.34034 -17.09354 -16.91145 -16.44427 -15.89102 -15.68026 -15.47299 -15.09697 -14.90574 -14.70756 -14.43480 -14.37778 -13.61885 -13.36395 -13.24507 -13.20149 -13.06247 -12.95287 -12.79871 -12.41821 -12.14271 -12.05804 -11.81688 -11.74334 -11.54469 -11.40967 -11.10136 -10.96587 -10.67433 -10.63893 -10.41399 -9.89873 -8.95939 -7.90246 -5.25562 1.43591 1.46317 1.54890 1.67663 1.75629 2.29158 2.46052 2.69050 3.26026 3.39809 3.59086 3.73983 3.83804 3.88259 4.03027 4.21796 4.27941 4.31909 4.46720 4.47831 4.55122 4.56894 4.69750 4.76846 4.80641 4.89178 5.06258 5.08339 5.11688 5.18289 5.24106 5.25504 5.29482 5.36642 5.47234 5.49747 5.74627 5.90347 5.99130 6.56689 6.66125 6.88405 7.31350 7.47164 7.59925 8.54126 9.26179 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.017772 B = 0.004082 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.134979 B = 6858.556663 C = 7562.584357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.262 1.262 7 C -0.232 4.232 8 H 0.091 0.909 9 N -0.633 5.633 10 C 0.121 3.879 11 C 0.111 3.889 12 N -0.692 5.692 13 C 0.515 3.485 14 O -0.588 6.588 15 C -0.111 4.111 16 H 0.099 0.901 17 C -0.107 4.107 18 C -0.119 4.119 19 C -0.104 4.104 20 C -0.103 4.103 21 H 0.131 0.869 22 C 0.513 3.487 23 N -0.837 5.837 24 O -0.592 6.592 25 C -0.076 4.076 26 C 0.143 3.857 27 H 0.245 0.755 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.406 0.594 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.418 0.582 39 H 0.403 0.597 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.022 0.978 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 -16.285 21.182 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.226 1.226 6 H -0.186 1.186 7 C -0.360 4.360 8 H 0.109 0.891 9 N -0.361 5.361 10 C -0.004 4.004 11 C 0.004 3.996 12 N -0.340 5.340 13 C 0.304 3.696 14 O -0.469 6.469 15 C -0.132 4.132 16 H 0.117 0.883 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.142 4.142 20 C -0.124 4.124 21 H 0.149 0.851 22 C 0.299 3.701 23 N -0.401 5.401 24 O -0.472 6.472 25 C -0.115 4.115 26 C 0.016 3.984 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.241 0.759 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.250 0.750 39 H 0.234 0.766 40 H 0.059 0.941 41 H 0.102 0.898 42 H 0.040 0.960 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.720 -15.990 20.152 25.736 hybrid contribution 0.120 1.968 -0.265 1.989 sum 0.840 -14.022 19.888 24.348 Atomic orbital electron populations 1.70070 1.06786 1.25429 1.58285 1.25681 0.96388 1.01118 1.03059 0.85058 0.77786 0.78962 0.77412 1.21415 1.22618 1.18634 1.19472 0.90961 0.83110 1.42477 0.89141 1.46365 1.02740 1.00704 1.86268 1.23052 0.95143 0.83630 0.98612 1.22518 0.98458 0.97580 0.81067 1.45556 1.32326 1.50173 1.05976 1.21334 0.79695 0.77347 0.91260 1.90598 1.38295 1.45165 1.72814 1.21567 0.99147 1.03785 0.88722 0.88278 1.21550 0.93660 1.01716 0.97572 1.21587 1.00455 1.00187 0.93434 1.21626 0.90218 1.00323 1.02004 1.21452 1.02726 0.92696 0.95514 0.85107 1.21122 0.74071 0.91893 0.82974 1.43741 1.75724 1.13966 1.06624 1.90749 1.51258 1.49815 1.55378 1.21077 0.96537 0.99948 0.93903 1.22634 0.87800 0.91808 0.96175 0.94565 0.91135 0.91654 0.88412 0.75906 0.90377 0.91785 0.88853 0.93291 0.88702 0.88072 0.74976 0.76605 0.94053 0.89818 0.96036 0.94700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.04 11.38 21.65 0.25 -60.79 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.98 47.01 29.55 68.60 2.03 49.04 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.23 -13.16 10.70 84.03 0.90 -12.26 16 8 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 9 N -0.63 -33.12 3.70 -717.31 -2.65 -35.77 16 10 C 0.12 4.82 8.69 86.48 0.75 5.57 16 11 C 0.11 4.60 4.43 46.76 0.21 4.81 16 12 N -0.69 -26.60 5.26 -447.32 -2.35 -28.95 16 13 C 0.51 19.42 7.15 87.66 0.63 20.05 16 14 O -0.59 -25.68 15.58 -3.02 -0.05 -25.72 16 15 C -0.11 -3.27 2.23 -11.54 -0.03 -3.30 16 16 H 0.10 3.50 5.51 -2.39 -0.01 3.48 16 17 C -0.11 -2.23 5.10 30.59 0.16 -2.08 16 18 C -0.12 -1.70 5.70 30.59 0.17 -1.53 16 19 C -0.10 -0.97 5.36 30.60 0.16 -0.80 16 20 C -0.10 -1.59 3.01 -11.54 -0.03 -1.62 16 21 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 22 C 0.51 10.56 5.91 87.66 0.52 11.08 16 23 N -0.84 -9.05 8.77 -173.54 -1.52 -10.57 16 24 O -0.59 -19.81 14.49 -3.03 -0.04 -19.85 16 25 C -0.08 -1.93 3.66 30.59 0.11 -1.82 16 26 C 0.14 7.48 7.32 86.50 0.63 8.11 16 27 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 30 H 0.10 3.92 7.46 -2.38 -0.02 3.90 16 31 H 0.41 15.02 8.17 -92.71 -0.76 14.26 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.39 7.56 -2.39 -0.02 1.37 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.86 7.22 -2.38 -0.02 0.84 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 0.30 7.56 -2.39 -0.02 0.28 16 38 H 0.42 1.10 8.25 -92.70 -0.76 0.34 16 39 H 0.40 4.35 8.93 -92.71 -0.83 3.52 16 40 H 0.04 1.32 8.06 -2.39 -0.02 1.30 16 41 H 0.08 1.95 8.10 -2.39 -0.02 1.93 16 42 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.03 2.10 7.15 -2.39 -0.02 2.09 16 Total: -1.00 -83.84 341.93 -0.99 -84.83 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -1.30 Total: 25.19 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 4.65 Total: 22.59 kcal Atomic # 7 Polarization: -129.80 SS G_CDS: -6.28 Total: -136.08 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -0.09 Total: -45.58 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -83.84 -0.99 -84.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031040566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.312 kcal (2) G-P(sol) polarization free energy of solvation -83.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds