Wall clock time and date at job start Tue Mar 31 2020 04:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00050 * 2 1 4 4 H 1.48497 * 109.47105 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47174 * 300.00083 * 3 2 1 6 6 H 1.48500 * 109.46917 * 60.00227 * 3 2 1 7 7 C 1.38809 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99750 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.47577 * 134.49225 * 180.02562 * 9 7 2 11 11 C 1.53945 * 86.11901 * 155.35097 * 10 9 7 12 12 N 1.46500 * 113.74018 * 137.95088 * 11 10 9 13 13 C 1.34779 * 119.99687 * 156.92638 * 12 11 10 14 14 O 1.21279 * 120.00236 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99766 * 179.97438 * 13 12 11 16 16 C 1.53001 * 109.47086 * 179.97438 * 15 13 12 17 17 H 1.08998 * 109.60049 * 28.96083 * 16 15 13 18 18 C 1.52992 * 109.74107 * 268.55608 * 16 15 13 19 19 C 1.51806 * 110.88044 * 326.59946 * 18 16 15 20 20 C 1.51789 * 113.82679 * 293.04531 * 19 18 16 21 21 C 1.53062 * 110.74926 * 66.79177 * 20 19 18 22 22 C 1.51424 * 108.49022 * 275.07531 * 21 20 19 23 23 O 1.21280 * 119.89420 * 251.19209 * 22 21 20 24 24 N 1.33371 * 120.20992 * 71.21919 * 22 21 20 25 25 C 1.47814 * 134.45809 * 359.85931 * 9 7 2 26 26 H 0.97005 * 119.99892 * 359.97438 * 1 2 3 27 27 H 1.09000 * 113.77333 * 41.04804 * 10 9 7 28 28 H 1.09001 * 113.87139 * 269.66970 * 10 9 7 29 29 H 1.08997 * 113.73993 * 269.15186 * 11 10 9 30 30 H 0.97001 * 120.00238 * 336.92842 * 12 11 10 31 31 H 1.09002 * 109.46769 * 60.00362 * 15 13 12 32 32 H 1.08996 * 109.47058 * 299.99980 * 15 13 12 33 33 H 1.08991 * 109.20053 * 86.98079 * 18 16 15 34 34 H 1.08996 * 109.19603 * 206.26909 * 18 16 15 35 35 H 1.08998 * 108.63048 * 171.90420 * 19 18 16 36 36 H 1.09000 * 108.58634 * 54.15218 * 19 18 16 37 37 H 1.09001 * 109.22590 * 306.46341 * 20 19 18 38 38 H 1.09006 * 109.22354 * 187.11556 * 20 19 18 39 39 H 1.09001 * 109.63265 * 34.77959 * 21 20 19 40 40 H 1.09005 * 109.63400 * 155.37732 * 21 20 19 41 41 H 0.97002 * 119.78097 * 180.30211 * 24 22 21 42 42 H 1.08996 * 113.77128 * 90.38545 * 25 9 7 43 43 H 1.09007 * 113.83356 * 318.91895 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 1.7200 -3.8101 0.0015 11 6 0.3465 -4.0826 0.6411 12 7 -0.3335 -5.2612 0.0983 13 6 -1.2740 -5.8926 0.8287 14 8 -1.5569 -5.4853 1.9355 15 6 -1.9739 -7.1047 0.2701 16 6 -2.9857 -7.6257 1.2927 17 1 -3.3451 -6.7990 1.9055 18 6 -2.3234 -8.6766 2.1859 19 6 -1.2891 -9.4719 1.4099 20 6 -1.8803 -10.3488 0.3211 21 6 -2.4928 -9.4938 -0.7909 22 6 -3.9063 -9.1264 -0.3909 23 8 -4.8476 -9.6303 -0.9661 24 7 -4.1194 -8.2502 0.5917 25 6 -0.1058 -2.7570 0.0027 26 1 -0.4850 0.8401 0.0004 27 1 2.5619 -4.0321 0.6573 28 1 1.8331 -4.2371 -0.9950 29 1 0.3583 -4.0631 1.7308 30 1 -0.1070 -5.5872 -0.7867 31 1 -1.2400 -7.8820 0.0571 32 1 -2.4928 -6.8331 -0.6491 33 1 -1.8375 -8.1789 3.0250 34 1 -3.0861 -9.3561 2.5659 35 1 -0.7415 -10.1053 2.1078 36 1 -0.5866 -8.7752 0.9524 37 1 -2.6537 -10.9843 0.7524 38 1 -1.0949 -10.9764 -0.1002 39 1 -1.9022 -8.5872 -0.9233 40 1 -2.5113 -10.0614 -1.7213 41 1 -5.0274 -8.0227 0.8459 42 1 -0.5313 -2.8722 -0.9942 43 1 -0.7189 -2.1398 0.6596 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031311474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:27 Heat of formation + Delta-G solvation = -0.572800 kcal Electronic energy + Delta-G solvation = -24251.108884 eV Core-core repulsion = 20719.764785 eV Total energy + Delta-G solvation = -3531.344100 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21451 -39.46282 -37.87218 -37.01921 -34.24416 -33.60871 -31.94589 -31.51100 -30.03791 -27.47435 -25.82205 -24.89697 -24.16262 -23.14804 -21.08665 -20.11585 -19.81009 -19.17521 -18.04540 -16.99639 -16.85082 -16.42279 -15.97913 -15.63577 -15.03317 -14.72677 -14.55549 -14.35413 -14.01035 -13.88678 -13.69204 -13.45123 -13.04750 -12.73573 -12.34817 -11.96039 -11.90383 -11.66525 -11.50671 -11.47502 -11.17971 -11.02966 -10.93072 -10.83813 -10.51779 -10.48514 -10.07236 -9.95117 -9.62974 -9.55166 -9.32398 -8.86703 -8.53920 -6.97756 -5.82647 -3.16897 2.45185 2.76663 2.98349 3.35510 3.39806 3.43921 3.46639 4.15186 4.32634 4.39614 4.42377 4.50044 4.67567 4.76573 4.94034 4.99915 5.08504 5.14443 5.20888 5.27787 5.41841 5.45657 5.51861 5.52898 5.60805 5.69610 5.82335 5.86058 5.93619 5.98590 6.13769 6.33826 6.48385 6.59756 6.66948 7.07340 7.17530 7.28492 7.49659 7.76310 7.91082 8.05385 8.41303 8.97478 9.63955 10.49517 11.34040 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.033621 B = 0.002919 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.614324 B = 9588.947578 C = 9781.338556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.226 4.226 8 H 0.082 0.918 9 N -0.607 5.607 10 C 0.113 3.887 11 C 0.091 3.909 12 N -0.714 5.714 13 C 0.513 3.487 14 O -0.542 6.542 15 C -0.187 4.187 16 C 0.150 3.850 17 H 0.117 0.883 18 C -0.132 4.132 19 C -0.135 4.135 20 C -0.112 4.112 21 C -0.172 4.172 22 C 0.520 3.480 23 O -0.558 6.558 24 N -0.719 5.719 25 C 0.153 3.847 26 H 0.254 0.746 27 H 0.049 0.951 28 H 0.035 0.965 29 H 0.111 0.889 30 H 0.397 0.603 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.402 0.598 42 H 0.028 0.972 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 -20.443 1.063 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.354 4.354 8 H 0.100 0.900 9 N -0.334 5.334 10 C -0.014 4.014 11 C -0.013 4.013 12 N -0.364 5.364 13 C 0.298 3.702 14 O -0.419 6.419 15 C -0.227 4.227 16 C 0.045 3.955 17 H 0.135 0.865 18 C -0.171 4.171 19 C -0.172 4.172 20 C -0.149 4.149 21 C -0.211 4.211 22 C 0.307 3.693 23 O -0.436 6.436 24 N -0.371 5.371 25 C 0.027 3.973 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.129 0.871 30 H 0.230 0.770 31 H 0.145 0.855 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.114 0.886 41 H 0.238 0.762 42 H 0.046 0.954 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.455 -20.089 1.518 20.440 hybrid contribution 0.220 0.955 -0.539 1.119 sum -3.235 -19.134 0.979 19.430 Atomic orbital electron populations 1.69840 1.05061 1.25430 1.56109 1.24827 0.95705 0.97687 1.02080 0.86017 0.78712 0.83504 0.77325 1.20386 1.21678 1.21578 1.19028 0.90283 0.81592 1.44487 0.89976 1.45726 1.02403 0.99169 1.86060 1.22863 0.94621 0.86913 0.97048 1.23920 0.93357 0.84160 0.99907 1.46146 1.39717 1.30801 1.19750 1.20361 0.80016 0.84149 0.85685 1.90698 1.64108 1.66880 1.20253 1.23001 1.00886 0.98016 1.00774 1.21151 0.86047 0.95973 0.92357 0.86486 1.21774 0.98989 0.97519 0.98783 1.21350 0.98861 0.98958 0.97987 1.21219 1.00712 0.97882 0.95136 1.22701 0.93935 1.03713 1.00784 1.20564 0.91859 0.77957 0.78969 1.90746 1.45082 1.53684 1.54098 1.46141 1.10199 1.44052 1.36727 1.22711 0.88186 0.89187 0.97207 0.93550 0.93258 0.94742 0.87113 0.76978 0.85466 0.88085 0.89686 0.91031 0.91240 0.90821 0.91613 0.90491 0.86865 0.88596 0.76184 0.95395 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.09 11.39 55.49 0.63 -26.46 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.23 -6.24 10.70 -15.06 -0.16 -6.40 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.61 -15.13 3.70 -177.89 -0.66 -15.79 16 10 C 0.11 2.12 8.69 -2.97 -0.03 2.09 16 11 C 0.09 1.65 4.40 -70.15 -0.31 1.34 16 12 N -0.71 -9.48 5.37 -55.35 -0.30 -9.78 16 13 C 0.51 6.61 7.82 -10.98 -0.09 6.53 16 14 O -0.54 -9.09 15.00 5.56 0.08 -9.00 16 15 C -0.19 -1.60 3.29 -27.88 -0.09 -1.70 16 16 C 0.15 1.30 3.11 -67.56 -0.21 1.09 16 17 H 0.12 1.19 6.90 -51.93 -0.36 0.83 16 18 C -0.13 -1.01 5.57 -27.34 -0.15 -1.16 16 19 C -0.13 -0.85 5.19 -27.95 -0.14 -1.00 16 20 C -0.11 -0.71 5.67 -27.31 -0.15 -0.86 16 21 C -0.17 -1.29 5.52 -27.50 -0.15 -1.44 16 22 C 0.52 5.56 6.67 -11.25 -0.08 5.48 16 23 O -0.56 -8.37 17.92 5.56 0.10 -8.27 16 24 N -0.72 -6.47 5.09 -53.45 -0.27 -6.75 16 25 C 0.15 3.54 7.33 -2.85 -0.02 3.52 16 26 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.59 8.11 -51.93 -0.42 0.17 16 29 H 0.11 2.19 7.51 -51.93 -0.39 1.80 16 30 H 0.40 4.08 8.71 -40.82 -0.36 3.72 16 31 H 0.13 0.82 2.75 -51.93 -0.14 0.67 16 32 H 0.10 0.82 7.46 -51.93 -0.39 0.43 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.53 8.05 -51.93 -0.42 0.12 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.45 5.56 -51.93 -0.29 0.16 16 37 H 0.07 0.48 7.86 -51.93 -0.41 0.08 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.11 0.68 3.65 -51.93 -0.19 0.49 16 40 H 0.10 0.70 8.13 -51.93 -0.42 0.28 16 41 H 0.40 3.39 8.91 -40.82 -0.36 3.03 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 2.04 7.17 -51.92 -0.37 1.67 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -34.77 336.40 -8.22 -42.99 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.18 Total: 3.92 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -1.68 Total: 7.22 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.60 Total: -58.77 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.18 Total: -17.28 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.77 -8.22 -42.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031311474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.421 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds