Wall clock time and date at job start Tue Mar 31 2020 03:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00042 * 2 1 4 4 O 1.21555 * 120.00352 * 175.85818 * 3 2 1 5 5 C 1.47804 * 119.99870 * 355.85445 * 3 2 1 6 6 C 1.40925 * 127.23705 * 185.81901 * 5 3 2 7 7 N 1.31134 * 105.77432 * 179.97438 * 6 5 3 8 8 N 1.28518 * 109.06049 * 0.02562 * 7 6 5 9 9 C 1.46494 * 124.44369 * 179.97438 * 8 7 6 10 10 N 1.28590 * 111.11001 * 359.71507 * 8 7 6 11 11 C 1.46502 * 120.00223 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.91330 * 183.90046 * 11 2 1 13 13 C 1.54908 * 111.00489 * 307.80641 * 11 2 1 14 14 N 1.47744 * 104.84302 * 155.16901 * 13 11 2 15 15 C 1.36939 * 125.82399 * 155.83215 * 14 13 11 16 16 H 1.07994 * 119.99673 * 359.92641 * 15 14 13 17 17 C 1.38811 * 119.99961 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99830 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99792 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47162 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47064 * 120.00094 * 19 17 15 22 22 H 1.48507 * 109.46905 * 240.00013 * 19 17 15 23 23 C 1.47024 * 108.52568 * 335.74521 * 14 13 11 24 24 C 1.54320 * 107.40429 * 1.18665 * 23 14 13 25 25 H 1.08996 * 110.72214 * 263.57134 * 24 23 14 26 26 O 1.42901 * 110.72422 * 140.47593 * 24 23 14 27 27 H 1.09006 * 109.46727 * 275.65551 * 1 2 3 28 28 H 1.08997 * 109.47176 * 35.65524 * 1 2 3 29 29 H 1.09001 * 109.46902 * 155.65838 * 1 2 3 30 30 H 1.07997 * 127.11097 * 0.02562 * 6 5 3 31 31 H 1.09007 * 109.47634 * 90.01820 * 9 8 7 32 32 H 1.09001 * 109.47115 * 210.01971 * 9 8 7 33 33 H 1.09004 * 109.47129 * 330.01733 * 9 8 7 34 34 H 1.09002 * 110.36603 * 273.92208 * 13 11 2 35 35 H 1.09003 * 110.36568 * 36.13069 * 13 11 2 36 36 H 0.96993 * 119.99645 * 179.97438 * 18 17 15 37 37 H 1.08992 * 109.88529 * 241.68949 * 23 14 13 38 38 H 1.09000 * 109.87708 * 120.67881 * 23 14 13 39 39 H 0.96704 * 113.99766 * 61.45034 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3521 1.1687 0.0760 5 6 1.4028 2.4456 -0.0925 6 6 1.9505 3.7378 -0.2190 7 7 0.9268 4.5560 -0.2647 8 7 -0.1593 3.8746 -0.1775 9 6 -1.5046 4.4542 -0.1936 10 7 0.0896 2.6168 -0.0796 11 6 2.1976 -1.2687 0.0006 12 1 3.2718 -1.0977 0.0697 13 6 1.7075 -2.1923 1.1436 14 7 2.0291 -3.5607 0.6886 15 6 2.2213 -4.6495 1.4966 16 1 2.1420 -4.5470 2.5687 17 6 2.5191 -5.8847 0.9375 18 7 2.6162 -6.0094 -0.3692 19 14 2.7820 -7.3698 2.0397 20 1 2.6192 -6.9673 3.4597 21 1 1.7849 -8.4178 1.7043 22 1 4.1516 -7.9046 1.8312 23 6 2.1064 -3.5588 -0.7796 24 6 1.8484 -2.1130 -1.2535 25 1 0.8034 -1.9794 -1.5329 26 8 2.7083 -1.7774 -2.3444 27 1 -0.3633 0.1013 1.0227 28 1 -0.3633 0.8350 -0.5990 29 1 -0.3633 -0.9363 -0.4236 30 1 2.9970 3.9999 -0.2689 31 1 -1.8648 4.5084 -1.2210 32 1 -2.1766 3.8291 0.3944 33 1 -1.4736 5.4564 0.2339 34 1 2.2391 -1.9666 2.0680 35 1 0.6329 -2.0800 1.2877 36 1 2.8247 -6.8724 -0.7598 37 1 1.3484 -4.2248 -1.1916 38 1 3.0971 -3.8824 -1.0989 39 1 2.5831 -2.3297 -3.1282 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047563399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:20 Heat of formation + Delta-G solvation = 82.172251 kcal Electronic energy + Delta-G solvation = -24231.741917 eV Core-core repulsion = 20600.445569 eV Total energy + Delta-G solvation = -3631.296348 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.80956 -39.75247 -37.77518 -35.23176 -34.78843 -33.99521 -32.86066 -31.75974 -28.86925 -28.08388 -27.29208 -26.61903 -24.76009 -23.62400 -22.22559 -20.69088 -20.42034 -19.12806 -17.53692 -17.23736 -17.17603 -17.02826 -16.42487 -15.79915 -15.02591 -14.94767 -14.67950 -14.08093 -13.94027 -13.45240 -13.31854 -13.08026 -12.86157 -12.69824 -12.57514 -12.25876 -12.03706 -11.87565 -11.37376 -11.22047 -10.87961 -10.81821 -10.80418 -10.55714 -10.14257 -9.97694 -9.94406 -9.81072 -9.58724 -9.27408 -8.71214 -8.33731 -6.92284 -5.76697 -3.11739 1.20662 1.82138 1.94994 3.04790 3.32129 3.38570 3.44341 3.46681 3.75444 4.44032 4.51014 4.61323 4.70178 4.79120 4.87938 4.93892 5.26283 5.35959 5.42974 5.49261 5.55809 5.66198 5.69301 5.81035 5.86851 6.01112 6.06339 6.12840 6.40375 6.51176 6.60882 6.88346 7.35030 7.46555 7.52577 7.73460 7.93109 8.15802 8.21344 8.27002 9.13876 9.73785 10.37341 11.34819 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.032073 B = 0.003495 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.809845 B = 8010.183595 C = 8191.464247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.585 5.585 3 C 0.605 3.395 4 O -0.525 6.525 5 C -0.034 4.034 6 C 0.035 3.965 7 N -0.293 5.293 8 N -0.151 5.151 9 C 0.104 3.896 10 N -0.248 5.248 11 C 0.134 3.866 12 H 0.117 0.883 13 C 0.132 3.868 14 N -0.599 5.599 15 C -0.229 4.229 16 H 0.082 0.918 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.915 3.085 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.152 3.848 24 C 0.065 3.935 25 H 0.056 0.944 26 O -0.561 6.561 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.208 0.792 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.050 0.950 35 H 0.028 0.972 36 H 0.253 0.747 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.667 18.834 -2.136 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.316 5.316 3 C 0.389 3.611 4 O -0.399 6.399 5 C -0.197 4.197 6 C -0.149 4.149 7 N -0.133 5.133 8 N -0.053 5.053 9 C -0.035 4.035 10 N -0.096 5.096 11 C 0.030 3.970 12 H 0.135 0.865 13 C 0.005 3.995 14 N -0.327 5.327 15 C -0.357 4.357 16 H 0.099 0.901 17 C -0.203 4.203 18 N -0.570 5.570 19 Si 0.746 3.254 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.026 3.974 24 C 0.005 3.995 25 H 0.074 0.926 26 O -0.366 6.366 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.225 0.775 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.021 19.594 -1.702 22.073 hybrid contribution 0.530 -1.620 0.068 1.706 sum -9.491 17.974 -1.634 20.391 Atomic orbital electron populations 1.22105 0.78990 1.03556 1.02457 1.47557 1.07429 1.05336 1.71246 1.16685 0.86021 0.81221 0.77144 1.90813 1.12560 1.86213 1.50330 1.23166 0.89231 0.96920 1.10349 1.24832 0.99934 0.88083 1.02039 1.73988 0.92884 1.26638 1.19815 1.48170 1.07824 1.01291 1.48047 1.22219 0.75618 1.00454 1.05235 1.74603 1.17168 1.00619 1.17246 1.22470 0.98515 0.80855 0.95138 0.86472 1.21827 0.97541 0.85388 0.94764 1.44312 1.83307 1.03249 1.01840 1.19121 1.41349 0.85734 0.89465 0.90051 1.24824 1.01664 0.97768 0.96085 1.69943 1.54868 1.23504 1.08647 0.85989 0.77473 0.82561 0.79398 1.20420 1.21728 1.21654 1.21855 1.01976 0.89076 0.84454 1.23574 0.92125 0.97268 0.86566 0.92593 1.86491 1.63368 1.61284 1.25437 0.92416 0.89240 0.90818 0.77514 0.88961 0.87604 0.87711 0.93196 0.95435 0.93684 0.93411 0.92080 0.77900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 8.29 59.85 0.50 1.47 16 2 N -0.58 -9.83 2.91 -172.60 -0.50 -10.34 16 3 C 0.60 10.46 7.68 -12.35 -0.09 10.37 16 4 O -0.52 -10.62 16.34 5.32 0.09 -10.53 16 5 C -0.03 -0.49 6.88 -82.68 -0.57 -1.05 16 6 C 0.03 0.43 12.05 -16.83 -0.20 0.23 16 7 N -0.29 -3.41 12.01 30.90 0.37 -3.04 16 8 N -0.15 -1.55 4.34 -16.63 -0.07 -1.62 16 9 C 0.10 0.47 11.55 59.84 0.69 1.17 16 10 N -0.25 -3.05 8.68 33.42 0.29 -2.76 16 11 C 0.13 2.64 3.17 -65.78 -0.21 2.43 16 12 H 0.12 2.63 7.02 -51.93 -0.36 2.27 16 13 C 0.13 2.77 6.81 -2.35 -0.02 2.76 16 14 N -0.60 -15.25 3.41 -169.82 -0.58 -15.82 16 15 C -0.23 -6.33 10.29 -15.06 -0.15 -6.48 16 16 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 18 N -0.92 -26.66 10.31 55.49 0.57 -26.09 16 19 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.15 3.64 5.14 -3.06 -0.02 3.63 16 24 C 0.07 1.27 3.87 -24.90 -0.10 1.18 16 25 H 0.06 1.00 6.48 -51.93 -0.34 0.66 16 26 O -0.56 -10.62 13.39 -35.23 -0.47 -11.09 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 1.11 5.28 -51.93 -0.27 0.84 16 29 H 0.07 0.98 6.37 -51.93 -0.33 0.65 16 30 H 0.21 2.14 8.06 -52.49 -0.42 1.71 16 31 H 0.09 0.28 8.14 -51.92 -0.42 -0.15 16 32 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.03 0.55 6.95 -51.93 -0.36 0.19 16 36 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 38 H 0.06 1.65 7.28 -51.93 -0.38 1.27 16 39 H 0.37 5.50 9.11 45.56 0.42 5.92 16 LS Contribution 324.38 15.07 4.89 4.89 Total: -1.00 -35.15 324.38 -4.81 -39.95 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.10 Total: 4.14 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: -0.27 Total: 15.40 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.08 Total: -59.67 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.38 Total: -21.62 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.15 -4.81 -39.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047563399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.126 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds