Wall clock time and date at job start Tue Mar 31 2020 03:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00042 * 2 1 4 4 O 1.21555 * 120.00352 * 175.85818 * 3 2 1 5 5 C 1.47804 * 119.99870 * 355.85445 * 3 2 1 6 6 C 1.40925 * 127.23705 * 185.81901 * 5 3 2 7 7 N 1.31134 * 105.77432 * 179.97438 * 6 5 3 8 8 N 1.28518 * 109.06049 * 0.02562 * 7 6 5 9 9 C 1.46494 * 124.44369 * 179.97438 * 8 7 6 10 10 N 1.28590 * 111.11001 * 359.71507 * 8 7 6 11 11 C 1.46502 * 120.00223 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.91330 * 183.90046 * 11 2 1 13 13 C 1.54908 * 111.00489 * 307.80641 * 11 2 1 14 14 N 1.47744 * 104.84302 * 155.16901 * 13 11 2 15 15 C 1.36939 * 125.82399 * 155.83215 * 14 13 11 16 16 H 1.07994 * 119.99673 * 359.92641 * 15 14 13 17 17 C 1.38811 * 119.99961 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99830 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99792 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47162 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47064 * 120.00094 * 19 17 15 22 22 H 1.48507 * 109.46905 * 240.00013 * 19 17 15 23 23 C 1.47024 * 108.52568 * 335.74521 * 14 13 11 24 24 C 1.54320 * 107.40429 * 1.18665 * 23 14 13 25 25 H 1.08996 * 110.72214 * 263.57134 * 24 23 14 26 26 O 1.42901 * 110.72422 * 140.47593 * 24 23 14 27 27 H 1.09006 * 109.46727 * 275.65551 * 1 2 3 28 28 H 1.08997 * 109.47176 * 35.65524 * 1 2 3 29 29 H 1.09001 * 109.46902 * 155.65838 * 1 2 3 30 30 H 1.07997 * 127.11097 * 0.02562 * 6 5 3 31 31 H 1.09007 * 109.47634 * 90.01820 * 9 8 7 32 32 H 1.09001 * 109.47115 * 210.01971 * 9 8 7 33 33 H 1.09004 * 109.47129 * 330.01733 * 9 8 7 34 34 H 1.09002 * 110.36603 * 273.92208 * 13 11 2 35 35 H 1.09003 * 110.36568 * 36.13069 * 13 11 2 36 36 H 0.96993 * 119.99645 * 179.97438 * 18 17 15 37 37 H 1.08992 * 109.88529 * 241.68949 * 23 14 13 38 38 H 1.09000 * 109.87708 * 120.67881 * 23 14 13 39 39 H 0.96704 * 113.99766 * 61.45034 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3521 1.1687 0.0760 5 6 1.4028 2.4456 -0.0925 6 6 1.9505 3.7378 -0.2190 7 7 0.9268 4.5560 -0.2647 8 7 -0.1593 3.8746 -0.1775 9 6 -1.5046 4.4542 -0.1936 10 7 0.0896 2.6168 -0.0796 11 6 2.1976 -1.2687 0.0006 12 1 3.2718 -1.0977 0.0697 13 6 1.7075 -2.1923 1.1436 14 7 2.0291 -3.5607 0.6886 15 6 2.2213 -4.6495 1.4966 16 1 2.1420 -4.5470 2.5687 17 6 2.5191 -5.8847 0.9375 18 7 2.6162 -6.0094 -0.3692 19 14 2.7820 -7.3698 2.0397 20 1 2.6192 -6.9673 3.4597 21 1 1.7849 -8.4178 1.7043 22 1 4.1516 -7.9046 1.8312 23 6 2.1064 -3.5588 -0.7796 24 6 1.8484 -2.1130 -1.2535 25 1 0.8034 -1.9794 -1.5329 26 8 2.7083 -1.7774 -2.3444 27 1 -0.3633 0.1013 1.0227 28 1 -0.3633 0.8350 -0.5990 29 1 -0.3633 -0.9363 -0.4236 30 1 2.9970 3.9999 -0.2689 31 1 -1.8648 4.5084 -1.2210 32 1 -2.1766 3.8291 0.3944 33 1 -1.4736 5.4564 0.2339 34 1 2.2391 -1.9666 2.0680 35 1 0.6329 -2.0800 1.2877 36 1 2.8247 -6.8724 -0.7598 37 1 1.3484 -4.2248 -1.1916 38 1 3.0971 -3.8824 -1.0989 39 1 2.5831 -2.3297 -3.1282 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047563399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:19 Heat of formation + Delta-G solvation = 53.557367 kcal Electronic energy + Delta-G solvation = -24232.982751 eV Core-core repulsion = 20600.445569 eV Total energy + Delta-G solvation = -3632.537183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -44.71462 -41.18031 -39.37829 -36.74014 -36.43085 -34.80053 -34.06116 -33.44751 -30.50650 -29.25812 -28.69753 -27.87767 -26.47777 -24.92556 -23.06910 -22.33323 -22.01307 -20.53062 -19.00826 -18.61366 -18.42055 -18.06377 -17.75287 -17.37928 -16.54947 -16.26992 -15.82959 -15.78172 -15.50784 -14.70138 -14.52583 -14.29774 -14.08330 -13.79570 -13.73809 -13.61742 -13.45475 -13.15788 -13.00021 -12.93073 -12.76012 -12.64943 -12.02753 -11.88939 -11.81533 -11.61006 -11.46086 -11.35051 -10.93164 -10.77385 -10.47586 -9.74381 -8.96379 -7.87505 -5.25267 0.17792 0.86221 1.23556 1.47543 1.49107 1.59167 1.80391 2.08472 2.48539 2.80634 3.12753 3.34058 3.56476 3.60321 3.82117 3.92265 4.05550 4.06524 4.32354 4.34582 4.36180 4.43389 4.45889 4.49430 4.65967 4.70435 4.79260 4.84833 4.98553 5.07402 5.36692 5.42448 5.45462 5.61875 5.66036 6.12622 6.22037 6.83564 6.88142 7.04374 7.07783 7.68771 8.32126 9.22515 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.032073 B = 0.003495 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.809845 B = 8010.183595 C = 8191.464247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.584 5.584 3 C 0.603 3.397 4 O -0.565 6.565 5 C -0.061 4.061 6 C 0.030 3.970 7 N -0.295 5.295 8 N -0.134 5.134 9 C 0.087 3.913 10 N -0.241 5.241 11 C 0.145 3.855 12 H 0.085 0.915 13 C 0.135 3.865 14 N -0.621 5.621 15 C -0.244 4.244 16 H 0.087 0.913 17 C -0.063 4.063 18 N -0.949 5.949 19 Si 0.982 3.018 20 H -0.265 1.265 21 H -0.289 1.289 22 H -0.294 1.294 23 C 0.164 3.836 24 C 0.084 3.916 25 H 0.084 0.916 26 O -0.571 6.571 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.219 0.781 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.249 0.751 37 H 0.026 0.974 38 H 0.021 0.979 39 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.879 20.472 -1.739 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.315 5.315 3 C 0.390 3.610 4 O -0.442 6.442 5 C -0.221 4.221 6 C -0.152 4.152 7 N -0.136 5.136 8 N -0.039 5.039 9 C -0.050 4.050 10 N -0.092 5.092 11 C 0.040 3.960 12 H 0.103 0.897 13 C 0.009 3.991 14 N -0.349 5.349 15 C -0.373 4.373 16 H 0.104 0.896 17 C -0.256 4.256 18 N -0.598 5.598 19 Si 0.810 3.190 20 H -0.189 1.189 21 H -0.215 1.215 22 H -0.222 1.222 23 C 0.038 3.962 24 C 0.024 3.976 25 H 0.102 0.898 26 O -0.378 6.378 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.236 0.764 31 H 0.132 0.868 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -12.269 21.265 -1.304 24.585 hybrid contribution 1.111 -1.998 -0.067 2.287 sum -11.157 19.267 -1.372 22.307 Atomic orbital electron populations 1.22299 0.76634 1.04395 1.03678 1.47546 1.08662 1.04110 1.71141 1.17043 0.85754 0.82135 0.76109 1.90783 1.14411 1.86942 1.52112 1.22673 0.90099 0.95945 1.13413 1.25072 1.00927 0.87534 1.01701 1.74021 0.93088 1.26431 1.20045 1.48806 1.09174 1.00682 1.45241 1.22832 0.73215 1.01687 1.07294 1.74504 1.16016 1.01766 1.16914 1.22006 0.97139 0.82142 0.94679 0.89704 1.21918 0.98653 0.83600 0.94955 1.44574 1.83369 1.04502 1.02413 1.19503 1.40901 0.86717 0.90153 0.89560 1.25670 1.01942 1.00506 0.97461 1.70146 1.55787 1.23699 1.10159 0.84961 0.76747 0.78937 0.78356 1.18942 1.21547 1.22155 1.21598 0.98946 0.91601 0.84056 1.23336 0.93530 0.94021 0.86735 0.89790 1.86460 1.63596 1.61702 1.26069 0.91110 0.87806 0.90403 0.76406 0.86829 0.85639 0.85692 0.93648 0.93014 0.94211 0.95621 0.96085 0.75761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.75 8.29 127.77 1.06 2.81 16 2 N -0.58 -19.09 2.91 -818.27 -2.38 -21.47 16 3 C 0.60 20.69 7.68 86.77 0.67 21.35 16 4 O -0.57 -23.41 16.34 -3.89 -0.06 -23.47 16 5 C -0.06 -1.67 6.88 42.24 0.29 -1.38 16 6 C 0.03 0.71 12.05 85.46 1.03 1.74 16 7 N -0.30 -6.16 12.01 -56.16 -0.67 -6.84 16 8 N -0.13 -2.34 4.34 -206.54 -0.90 -3.24 16 9 C 0.09 0.44 11.55 127.77 1.48 1.92 16 10 N -0.24 -5.30 8.68 -48.17 -0.42 -5.72 16 11 C 0.15 5.75 3.17 46.38 0.15 5.89 16 12 H 0.08 3.94 7.02 -2.39 -0.02 3.93 16 13 C 0.13 5.64 6.81 86.79 0.59 6.23 16 14 N -0.62 -32.04 3.41 -691.18 -2.35 -34.39 16 15 C -0.24 -13.65 10.29 84.03 0.86 -12.78 16 16 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 17 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 18 N -0.95 -56.33 10.31 21.65 0.22 -56.11 16 19 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 23 C 0.16 8.07 5.14 86.73 0.45 8.51 16 24 C 0.08 3.27 3.87 31.78 0.12 3.40 16 25 H 0.08 2.83 6.48 -2.39 -0.02 2.81 16 26 O -0.57 -21.51 13.39 -148.98 -2.00 -23.50 16 27 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.10 2.27 5.28 -2.39 -0.01 2.26 16 29 H 0.08 1.85 6.37 -2.39 -0.02 1.83 16 30 H 0.22 4.37 8.06 -2.91 -0.02 4.34 16 31 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 32 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.95 6.95 -2.39 -0.02 1.93 16 36 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 37 H 0.03 1.36 7.51 -2.39 -0.02 1.34 16 38 H 0.02 1.19 7.28 -2.39 -0.02 1.17 16 39 H 0.39 11.37 9.11 -74.05 -0.67 10.69 16 Total: -1.00 -77.63 324.38 1.05 -76.59 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.42 Total: 16.00 kcal Atomic # 6 Polarization: 27.47 SS G_CDS: 7.16 Total: 34.63 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -6.50 Total: -127.76 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -2.06 Total: -46.97 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -77.63 1.05 -76.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047563399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.144 kcal (2) G-P(sol) polarization free energy of solvation -77.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds